View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8684_low_9 (Length: 379)

Name: NF8684_low_9
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8684_low_9
NF8684_low_9
[»] chr6 (20 HSPs)
chr6 (1-199)||(32950506-32950704)
chr6 (219-359)||(22166366-22166507)
chr6 (219-359)||(15698813-15698954)
chr6 (230-359)||(22062322-22062451)
chr6 (219-359)||(20017045-20017186)
chr6 (219-359)||(20169501-20169641)
chr6 (219-359)||(22243070-22243211)
chr6 (219-359)||(24856061-24856202)
chr6 (219-359)||(15850798-15850939)
chr6 (219-359)||(22767932-22768076)
chr6 (219-350)||(25625025-25625157)
chr6 (219-358)||(18853273-18853412)
chr6 (219-359)||(18011124-18011266)
chr6 (219-359)||(21561243-21561385)
chr6 (222-359)||(29594963-29595101)
chr6 (227-359)||(18447484-18447614)
chr6 (219-359)||(30672542-30672680)
chr6 (219-359)||(25632164-25632302)
chr6 (219-267)||(11218884-11218932)
chr6 (219-271)||(18188478-18188530)
[»] chr3 (34 HSPs)
chr3 (219-359)||(6814127-6814267)
chr3 (219-359)||(10603289-10603429)
chr3 (219-359)||(13505324-13505464)
chr3 (219-359)||(11946672-11946813)
chr3 (219-359)||(7599612-7599753)
chr3 (226-359)||(9361786-9361919)
chr3 (219-359)||(12187892-12188033)
chr3 (219-359)||(12194306-12194447)
chr3 (219-359)||(22165128-22165269)
chr3 (219-359)||(16449550-16449692)
chr3 (219-359)||(10146268-10146410)
chr3 (219-359)||(15644346-15644487)
chr3 (219-359)||(13188234-13188375)
chr3 (219-359)||(16654987-16655128)
chr3 (219-359)||(37941636-37941777)
chr3 (219-341)||(15557780-15557903)
chr3 (219-359)||(4369947-4370088)
chr3 (219-359)||(10160989-10161134)
chr3 (219-356)||(16374297-16374438)
chr3 (219-359)||(13689914-13690055)
chr3 (219-359)||(13694159-13694300)
chr3 (227-356)||(12777340-12777470)
chr3 (239-359)||(13089625-13089746)
chr3 (239-359)||(13096975-13097096)
chr3 (219-350)||(12161019-12161148)
chr3 (219-350)||(10547697-10547827)
chr3 (222-359)||(3246331-3246463)
chr3 (219-359)||(17387020-17387157)
chr3 (237-341)||(1991999-1992100)
chr3 (219-267)||(3340114-3340162)
chr3 (219-271)||(11866054-11866106)
chr3 (219-266)||(13196349-13196396)
chr3 (219-267)||(15629866-15629914)
chr3 (223-267)||(15945892-15945936)
[»] chr4 (14 HSPs)
chr4 (219-359)||(11497431-11497571)
chr4 (219-359)||(15253605-15253745)
chr4 (219-359)||(42710550-42710690)
chr4 (219-359)||(13822171-13822312)
chr4 (219-359)||(22110216-22110357)
chr4 (219-359)||(10630003-10630144)
chr4 (219-359)||(15348631-15348771)
chr4 (219-359)||(18291274-18291412)
chr4 (219-350)||(38426000-38426132)
chr4 (227-359)||(18082275-18082409)
chr4 (226-359)||(3353913-3354048)
chr4 (222-359)||(17485718-17485854)
chr4 (219-267)||(15864766-15864814)
chr4 (223-353)||(45235053-45235181)
[»] scaffold0230 (1 HSPs)
scaffold0230 (219-359)||(12744-12884)
[»] chr8 (16 HSPs)
chr8 (219-359)||(21955332-21955472)
chr8 (219-359)||(21381349-21381490)
chr8 (219-359)||(21099608-21099748)
chr8 (219-359)||(23910697-23910838)
chr8 (219-359)||(8313724-8313865)
chr8 (219-359)||(8323665-8323809)
chr8 (219-359)||(17619998-17620139)
chr8 (219-359)||(20039805-20039946)
chr8 (219-359)||(21854596-21854737)
chr8 (219-350)||(21942265-21942395)
chr8 (222-355)||(20711727-20711861)
chr8 (219-329)||(19365288-19365398)
chr8 (219-350)||(16419435-16419567)
chr8 (219-267)||(22369222-22369270)
chr8 (219-329)||(20375071-20375181)
chr8 (219-267)||(19766808-19766856)
[»] chr7 (23 HSPs)
chr7 (219-359)||(23514325-23514465)
chr7 (219-359)||(9582171-9582311)
chr7 (219-359)||(14550354-14550494)
chr7 (219-359)||(8717122-8717263)
chr7 (219-359)||(13673113-13673254)
chr7 (219-359)||(18594083-18594224)
chr7 (219-359)||(18617460-18617601)
chr7 (219-359)||(16150299-16150441)
chr7 (219-359)||(539576-539716)
chr7 (219-359)||(10432559-10432699)
chr7 (219-359)||(13657180-13657321)
chr7 (219-350)||(16466442-16466573)
chr7 (222-350)||(11927735-11927863)
chr7 (219-336)||(16531364-16531479)
chr7 (219-336)||(16634183-16634298)
chr7 (219-359)||(12566278-12566416)
chr7 (219-359)||(13355496-13355634)
chr7 (219-359)||(48802670-48802807)
chr7 (227-359)||(20107558-20107688)
chr7 (219-360)||(4311998-4312137)
chr7 (219-267)||(824903-824951)
chr7 (219-267)||(15207471-15207519)
chr7 (219-267)||(15917668-15917716)
[»] chr5 (17 HSPs)
chr5 (219-359)||(23711494-23711634)
chr5 (230-359)||(20791533-20791662)
chr5 (219-359)||(15734791-15734932)
chr5 (219-359)||(20596646-20596787)
chr5 (219-359)||(20602932-20603073)
chr5 (219-359)||(20609223-20609364)
chr5 (226-359)||(24939793-24939926)
chr5 (219-359)||(20621419-20621560)
chr5 (219-359)||(18072157-18072298)
chr5 (219-359)||(23747307-23747448)
chr5 (219-359)||(24953990-24954132)
chr5 (219-359)||(20445646-20445788)
chr5 (219-359)||(23601460-23601601)
chr5 (219-359)||(24219091-24219231)
chr5 (219-359)||(20574720-20574857)
chr5 (219-271)||(21281816-21281868)
chr5 (219-267)||(22854836-22854884)
[»] chr2 (15 HSPs)
chr2 (219-359)||(12433-12572)
chr2 (221-359)||(116803-116941)
chr2 (219-359)||(25356768-25356909)
chr2 (219-359)||(22664343-22664485)
chr2 (219-359)||(22045477-22045618)
chr2 (219-359)||(24796101-24796242)
chr2 (219-359)||(16774907-16775049)
chr2 (219-359)||(17589664-17589806)
chr2 (219-359)||(27626850-27626984)
chr2 (219-359)||(25145581-25145722)
chr2 (222-355)||(24517141-24517275)
chr2 (222-359)||(24501357-24501491)
chr2 (227-341)||(24820854-24820971)
chr2 (219-359)||(25371776-25371913)
chr2 (219-330)||(25366602-25366710)
[»] chr1 (6 HSPs)
chr1 (219-359)||(27046132-27046272)
chr1 (226-359)||(20236732-20236865)
chr1 (219-359)||(21799480-21799621)
chr1 (219-341)||(17095437-17095560)
chr1 (219-359)||(3989352-3989493)
chr1 (247-359)||(8652334-8652443)
[»] scaffold0029 (1 HSPs)
scaffold0029 (219-359)||(122627-122767)
[»] scaffold0022 (1 HSPs)
scaffold0022 (226-358)||(24851-24983)
[»] scaffold0127 (1 HSPs)
scaffold0127 (219-359)||(4-146)
[»] scaffold0404 (1 HSPs)
scaffold0404 (219-359)||(295-437)
[»] scaffold0215 (1 HSPs)
scaffold0215 (226-301)||(7843-7918)
[»] scaffold0004 (3 HSPs)
scaffold0004 (217-359)||(252685-252828)
scaffold0004 (219-355)||(355315-355453)
scaffold0004 (219-267)||(18872-18920)
[»] scaffold0035 (1 HSPs)
scaffold0035 (219-356)||(51312-51450)
[»] scaffold0206 (1 HSPs)
scaffold0206 (219-359)||(17361-17502)
[»] scaffold0020 (2 HSPs)
scaffold0020 (219-359)||(115904-116045)
scaffold0020 (219-359)||(120208-120349)
[»] scaffold0216 (1 HSPs)
scaffold0216 (219-359)||(10678-10816)
[»] scaffold0679 (1 HSPs)
scaffold0679 (219-359)||(7269-7409)
[»] scaffold0346 (1 HSPs)
scaffold0346 (222-348)||(4438-4565)
[»] scaffold0974 (1 HSPs)
scaffold0974 (219-350)||(371-502)
[»] scaffold0374 (1 HSPs)
scaffold0374 (219-359)||(9449-9592)
[»] scaffold0037 (2 HSPs)
scaffold0037 (227-341)||(44715-44830)
scaffold0037 (227-341)||(52104-52219)
[»] scaffold0032 (1 HSPs)
scaffold0032 (219-350)||(90533-90663)
[»] scaffold0220 (1 HSPs)
scaffold0220 (219-359)||(9137-9275)
[»] scaffold0034 (1 HSPs)
scaffold0034 (219-350)||(59446-59578)
[»] scaffold1941 (1 HSPs)
scaffold1941 (222-355)||(1059-1193)
[»] scaffold0162 (1 HSPs)
scaffold0162 (222-359)||(35920-36058)
[»] scaffold0328 (1 HSPs)
scaffold0328 (219-359)||(1057-1195)
[»] scaffold0156 (1 HSPs)
scaffold0156 (219-350)||(101-231)
[»] scaffold0026 (1 HSPs)
scaffold0026 (219-359)||(10416-10550)
[»] scaffold0018 (1 HSPs)
scaffold0018 (227-341)||(19020-19137)
[»] scaffold0402 (1 HSPs)
scaffold0402 (219-359)||(7055-7193)
[»] scaffold0059 (1 HSPs)
scaffold0059 (219-359)||(11651-11788)
[»] scaffold0013 (1 HSPs)
scaffold0013 (219-359)||(233610-233747)
[»] scaffold0278 (2 HSPs)
scaffold0278 (221-359)||(13864-13999)
scaffold0278 (221-359)||(17198-17333)
[»] scaffold0566 (1 HSPs)
scaffold0566 (219-267)||(1874-1922)
[»] scaffold0375 (1 HSPs)
scaffold0375 (219-267)||(11792-11840)
[»] scaffold0384 (1 HSPs)
scaffold0384 (219-267)||(9841-9889)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 32950506 - 32950704
Alignment:
Q  1 aatcaatatttaaataaaagactaaaaagggccaaaacataaaccacatggattttcttcatcttaagcctccaactgcttttaaacttaagctgcctta 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950506 aatcaatatttaaataaaagactataaagggccaaaacataaaccacatggattttcttcatcttaagcctccaactgcttttaaacttaagctgcctta 32950605  T
Q  101 gcgatcctgggtggctggcttctttcgaacttcattatcttagctttctgctttcggtcttcagctttctgcattctgtctttagctttccgctttctg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950606 gcgatcctgggtggctggcttctttcgaacttcattatcttagctttctgctttcggtcttcagctttctgcattctgtctttagctttccgctttctg 32950704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 22166507 - 22166366
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  22166507 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 22166408  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  22166407 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 22166366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 15698813 - 15698954
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaa-tttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15698813 ttgttgtgttttattgtaaaaggcatggtcaagtagctaaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattc 15698912  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  ||||||||||||||||    
T  15698913 ttgtacatcaaagcaaactcttgtgttttaagtcttcttgat 15698954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 230 - 359
Target Start/End: Complemental strand, 22062451 - 22062322
Alignment:
Q  230 tattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatgaaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22062451 tattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattcttgtacatgaaa 22062352  T
Q  330 gcaaactcttgtaatttaagtcttcttgat 359  Q
    | ||||||||||  ||||||||||||||||    
T  22062351 gtaaactcttgtgttttaagtcttcttgat 22062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 20017186 - 20017045
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  20017186 ttgttttgttttattgtaaaaggcatggttaagtagctactttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 20017087  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  ||||||||||||||||    
T  20017086 ttgtacataaaagcaaactcttgtgttttaagtcttcttgat 20017045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 20169501 - 20169641
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctctta-tttgattgattc 317  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||    
T  20169501 ttgttctgttttattgtaaaaggcatagttaagtagctaatttttattgaaaaaatcaagaca-aaaattttcattgtctcctcttattttgattgattc 20169599  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  20169600 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 20169641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 22243070 - 22243211
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  |||||||    
T  22243070 ttgtttcgttttattgtgaaaggcatgtttaagtagctaatttttattgaaaatatcgtgacacaaaaattttcattgtctcctcttattttgttgattc 22243169  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  22243170 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 22243211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 24856202 - 24856061
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||    
T  24856202 ttgttctgttttatggtaaaaggcatagttaagtagctaatttttattgaaaacatcatgacacaaaatttttcattgtctcctcttattttgttgattc 24856103  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  ||||||||||||||||    
T  24856102 ttgtacataaaagcaaactcttgtgttttaagtcttcttgat 24856061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 15850939 - 15850798
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||    
T  15850939 ttgttttgttttattgcaaaaggcatggttaaatagctaatttttattgaaaatatcatgatacaaaaatttccattgtctcctcttatttg-ttgattc 15850841  T
Q  318 ttgtacatgaaagcaaactcttgtaattt-aagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||| |||||||||||||    
T  15850840 ttgtacatgaaagcaaactcttgtgttttaaagtcttcttgat 15850798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 22768076 - 22767932
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaata---tcatgacacaaaa-ttttcattgtctcctcttatttgattga 314  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |   ||||||||||||| ||||||||||||||||||||||  ||||    
T  22768076 ttgttctgttttattgtaaaaggcatagttaagtagctaatttttattgaaaaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttga 22767977  T
Q  315 ttcttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
     ||||||||||||||||||||||||||  ||||||||||||||||    
T  22767976 ctcttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 22767932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 25625025 - 25625157
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  25625025 ttgttttgttttattgtgaaaggcatggttaagtagcttatttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttatttc 25625124  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    ||||||||||||| ||||||||||  |||||||    
T  25625125 ttgtacatgaaagtaaactcttgtgttttaagt 25625157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 358
Target Start/End: Original strand, 18853273 - 18853412
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| |||| |||| ||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  18853273 ttgttttgttttattgtgaaagacatgattaagtagcttgtttttattgaaaaatatcatgacataaattttt-attgtctcctcttaattggttatttc 18853371  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttga 358  Q
    ||||||||||||| ||||||||||   |||||| |||||||    
T  18853372 ttgtacatgaaagtaaactcttgtgtcttaagttttcttga 18853412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 18011124 - 18011266
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttc-attgtctcctcttatttgattgatt 316  Q
    |||||||||||||||||||||||||||||||| || ||  |||||| ||||| | ||||||||| ||||||||  |||||||||||||| ||| | | ||    
T  18011124 ttgttttgttttattgtaaaaggcatggttaactatcttgtttttaatgaaataaatcatgacataaaattttttattgtctcctcttagttggtcgttt 18011223  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||| ||||||||||  ||||||| ||| ||||    
T  18011224 cttgtacatgaaagtaaactcttgtgttttaagttttcctgat 18011266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 21561385 - 21561243
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaaattttca-ttgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||| |||| |||| ||||||||||  ||||||||| |||||||||||||| ||| |||| | ||||||||||||| ||| ||  ||    
T  21561385 ttgttttgttttattgtgaaagacatgattaagtagcttgtttttattgaaaaatatcatgacataaattttttatttgtctcctcttaattggttattt 21561286  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  ||||||||||  ||||||| ||||||||    
T  21561285 cttgtacatgaaaataaactcttgtgttttaagttttcttgat 21561243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 29594963 - 29595101
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| |||| ||||||||||||||||||||  |||||| ||||| | | |||| || ||||||||  ||||||||||||| ||| ||| ||||||    
T  29594963 ttttgttttcttgtgaaaggcatggttaagtagcttgtttttaatgaaataaagcatggcataaaattttttttgtctcctcttagttggttgtttcttg 29595062  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||  |||||||||| ||||||| ||||||||    
T  29595063 tacatgaaagtgaactcttgtattttaagttttcttgat 29595101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 227 - 359
Target Start/End: Original strand, 18447484 - 18447614
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatg 326  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||| ||||||||| ||| ||||  || | || | ||||| | ||| ||||||||||||    
T  18447484 ttttattgtaaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataaatttttatttttttctttttattgg-ttgtttcttgtacatg 18447581  T
Q  327 aaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||| ||||||||||  ||||||| ||||||||    
T  18447582 aaagtaaactcttgtgttttaagttttcttgat 18447614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 30672680 - 30672542
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||  |||| |||| ||||||||||  |||||||||| |||   |||||| ||| ||||  ||||||||||| | ||| ||| ||||    
T  30672680 ttgttttgtttaattgcgaaagacatgattaagtagcttgtttttattgagaatt--atgacataaatttttagttgtctcctctaaattggttgtttct 30672583  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||| ||||||||||  ||||||| ||||||||    
T  30672582 tgtacatgaaagtaaactcttgtgttttaagttttcttgat 30672542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 25632302 - 25632164
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||| ||||||||| ||||||||| ||||||| ||  ||||||||| ||| || |||||| ||| ||||  ||||||||||| | ||| ||| ||||    
T  25632302 ttgttttattttattgtgaaaggcatgattaagtaacttgtttttattgtaaa-attatgacataaatttttg-ttgtctcctctaaattggttgtttct 25632205  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||  ||||||| ||||||||    
T  25632204 tgtacatgaaagtgaactcttgtgttttaagttttcttgat 25632164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 11218884 - 11218932
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  ||| |||||  |||||||||    
T  11218884 ttgttttgttttattgtaaaaggcatgaataaatagcttgtttttattg 11218932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 18188530 - 18188478
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa 271  Q
    |||| |||||||||||| |||| |||| ||||||||||  |||||||||||||    
T  18188530 ttgtgttgttttattgtgaaagacatgattaagtagcttgtttttattgaaaa 18188478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 6814127 - 6814267
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6814127 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 6814226  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  6814227 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 6814267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 10603429 - 10603289
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10603429 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 10603330  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  10603329 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 10603289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 13505464 - 13505324
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13505464 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 13505365  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  13505364 tgtacataaaagcaaactcttgtgttttaagtcttcttgat 13505324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 11946672 - 11946813
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11946672 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 11946771  T
Q  319 tgtacatg-aaagcaaactcttgtaatttaagtcttcttgat 359  Q
    | |||||| |||||||||||||||  ||||||||||||||||    
T  11946772 tatacatgaaaagcaaactcttgtgttttaagtcttcttgat 11946813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 7599612 - 7599753
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  7599612 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 7599711  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  7599712 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 7599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 226 - 359
Target Start/End: Complemental strand, 9361919 - 9361786
Alignment:
Q  226 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacat 325  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9361919 gttttattgtaaaagacatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattcttgtacat 9361820  T
Q  326 gaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||  ||||||||||||||||    
T  9361819 gaaagcaaactcttgtgttttaagtcttcttgat 9361786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 12188033 - 12187892
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  12188033 ttgttctgttttattgtaaaaggcatggttaagtagctaatttttattaaaaatatcatgacacaaaatttttcattgtctcctcttattttgttgattc 12187934  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  12187933 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 12187892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 12194447 - 12194306
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  12194447 ttgttctgttttattgtaaaaggcatggttaagtagctaatttttattaaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 12194348  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  12194347 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 12194306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 22165269 - 22165128
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  22165269 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 22165170  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  | ||||| ||||||||    
T  22165169 ttgtacatgaaagcaaactcttgtgttctaagttttcttgat 22165128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 16449692 - 16449550
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgaca-caaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  16449692 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacataaaaattttcattgtctcctcctattcgattgattc 16449593  T
Q  318 ttgtacatgaaagc-aaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||| ||||||||||  ||||||||||||||||    
T  16449592 ttgtacatgaaagcaaaactcttgtgttttaagtcttcttgat 16449550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 10146268 - 10146410
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctctta-tttgattgatt 316  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||    
T  10146268 ttgttctgttttattgtaaaaggcatagttaagtagctaatttttattgaaaaaatcaagacacaaaaattttcattgtctcctcttattttgattgatt 10146367  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  10146368 cttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 10146410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 15644346 - 15644487
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  15644346 ttgttttgttttattgtaaaaggcatgattaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 15644445  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||| ||||||||||||||||  |||||| |||||||||    
T  15644446 ttgtacacgaaagcaaactcttgtgttttaagccttcttgat 15644487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 13188375 - 13188234
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||    
T  13188375 ttgttctgttttattgtaaaaggcatagttaagtagttaatttttattgaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttgattc 13188276  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||| ||||||  ||||||||||||||||    
T  13188275 ttgtacatgaaagcaaattcttgtgttttaagtcttcttgat 13188234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 16654987 - 16655128
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||  |||||||    
T  16654987 ttgttttgttttattgtaaaaggcatagttaagtagctaatttttattaaaaaaatcatgacacaaaatttttcattgtctcctcttattttgttgattc 16655086  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||| ||||||  ||||||||||||||||    
T  16655087 ttgtacataaaagcaaattcttgtgttttaagtcttcttgat 16655128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 37941636 - 37941777
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaat-tttcattgtctcctcttatttgattgattc 317  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||  |||||||    
T  37941636 ttgtttcgttttattgtgaaaggcatgtttaagtagctaatttttattaaaaatatcatgacacaaaaaatttcattgtctcctcttattttgttgattc 37941735  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  37941736 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 37941777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 15557903 - 15557780
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||    
T  15557903 ttgtttcgttttattgtgaaaggcatgtttaagtagctaatttttattgaaaatatcgtgacacaaaaattttcattgtctcctcttattttgttgattc 15557804  T
Q  318 ttgtacatgaaagcaaactcttgt 341  Q
    ||||||||||||||||||||||||    
T  15557803 ttgtacatgaaagcaaactcttgt 15557780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 4369947 - 4370088
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||    
T  4369947 ttgttctgttttattgtgaaaggcatggttaagtagcttatttttattgaaaaatatcatgacacaaaatttttattgtctcctcttaattggttaattc 4370046  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||    
T  4370047 ttgtacatgaaagtaaactcttgtgttttaagttttcttgat 4370088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 10161134 - 10160989
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaa----aatatcatgacacaaaa-ttttcattgtctcctcttatttgattg 313  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||    || |||| ||||||||| ||||||||||||||||||||||  |||    
T  10161134 ttgttctgttttattgtaaaaggcatagttaagtagctaatttttattgaagaaaaaaatcaagacacaaaaattttcattgtctcctcttattttgttg 10161035  T
Q  314 attcttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  10161034 attcttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 10160989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 16374438 - 16374297
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaata--tcatgacacaaaa--ttttcattgtctcctcttatttgattga 314  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |  |||||||| ||||  | ||||||||||||||||||||  || |    
T  16374438 ttgttttgttttattgtaaaaggcatagttaagtagctaatttttattaaaaaaaaatcatgacaaaaaaaatcttcattgtctcctcttattttgttta 16374339  T
Q  315 ttcttgtacatgaaagcaaactcttgtaatttaagtcttctt 356  Q
    |||||||||||||||||||||||||||  |||||||||||||    
T  16374338 ttcttgtacatgaaagcaaactcttgtgttttaagtcttctt 16374297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13689914 - 13690055
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||| | ||||||||| | |||||| |||||||||||||| ||| | | |||    
T  13689914 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaataaatcatgacatataatttttattgtctcctcttagttggtcgtttc 13690013  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||| ||| ||||||||    
T  13690014 ttgtacatgaaagtgaactcttgtatttttagttttcttgat 13690055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13694159 - 13694300
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||| | ||||||||| |||||||| |||||||||||||| ||| | | |||    
T  13694159 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaataaatcatgacataaaatttttattgtctcctcttagttggtcgtttc 13694258  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  ||||||| || ||| ||| ||||||||    
T  13694259 ttgtacatgaaagtgaactcttatatttttagttttcttgat 13694300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 356
Target Start/End: Complemental strand, 12777470 - 12777340
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacat 325  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||| ||| |||| |||||||| ||||| ||| || ||||||||||||    
T  12777470 ttttattgtgaaaagcatggttaagtagcttatttttattgaaaaatatcatgacataaattttttattgtctcatcttaattggttaattcttgtacat 12777371  T
Q  326 gaaagcaaactcttgtaatttaagtcttctt 356  Q
    ||||| ||||||||||  ||||||| |||||    
T  12777370 gaaagtaaactcttgtgctttaagttttctt 12777340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 13089746 - 13089625
Alignment:
Q  239 aggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatgaaagcaaactc 337  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  ||||||||||||||||  |||||    
T  13089746 aggcatggttaagtagcttgtttttattgaaaactatcatgacataaattttttattgtctcctcttaattggttatttcttgtacatgaaagtgaactc 13089647  T
Q  338 ttgtaatttaagtcttcttgat 359  Q
    ||||| ||||||| ||||||||    
T  13089646 ttgtattttaagttttcttgat 13089625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 13096975 - 13097096
Alignment:
Q  239 aggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatgaaagcaaactc 337  Q
    ||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  ||||||||||||||||  |||||    
T  13096975 aggcatggttaagtagcttttttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttatttcttgtacatgaaagtgaactc 13097074  T
Q  338 ttgtaatttaagtcttcttgat 359  Q
    ||||| ||||||| ||||||||    
T  13097075 ttgtattttaagttttcttgat 13097096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 12161148 - 12161019
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| |||||||||  |||||||||  ||||||||||||| ||||||||| ||| |||| |||||||||||||| ||| | | ||||    
T  12161148 ttgttttgttttattgtgaaaggcatgactaagtagcttgtttttattgaaaa-atcatgacataaattttttattgtctcctctta-ttggtcgtttct 12161051  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagt 350  Q
    |||||||||||| ||||||||||  |||||||    
T  12161050 tgtacatgaaagtaaactcttgtgttttaagt 12161019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 10547827 - 10547697
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| |||| |||| ||||||||||  |||||||||| || ||||||||| |||||||| |||||||||||||| | | ||| ||||    
T  10547827 ttgttttgttttattgtgaaagacatgattaagtagcttgtttttattgagaa-atcatgacataaaatttttattgtctcctcttactag-ttgtttct 10547730  T
Q  319 tgtacatgaaagcaaa-ctcttgtaatttaagt 350  Q
    |||||||||||| ||| |||||||  |||||||    
T  10547729 tgtacatgaaagtaaagctcttgtgttttaagt 10547697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 359
Target Start/End: Complemental strand, 3246463 - 3246331
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgt 321  Q
    |||||||||||||  ||||||||| ||||||||||  |||||||| |||||   ||||||   ||||||  ||||||||||| | ||| ||| |||||||    
T  3246463 ttttgttttattgcgaaaggcatgattaagtagcttgtttttattcaaaatt--atgaca---aatttttgttgtctcctctaaattggttgtttcttgt 3246369  T
Q  322 acatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||  |||||||||  ||||||| ||||||||    
T  3246368 acatgaaagtgaactcttgtgttttaagttttcttgat 3246331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 17387020 - 17387157
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||  |||| |||| ||||||||||  ||||||||||||||   |||||| ||| ||||  |||| |||||| | ||| ||| ||||    
T  17387020 ttgttttgtttaattgagaaagacatgattaagtagcttgtttttattgaaaatt--atgacataaatttttg-ttgtatcctctaaattggttgtttct 17387116  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||  ||||||| ||||||||    
T  17387117 tgtacatgaaagtgaactcttgtgttttaagttttcttgat 17387157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 1991999 - 1992100
Alignment:
Q  237 aaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatgaaagcaaact 336  Q
    ||||||||| ||||||||||  ||||||||||||||   |||||| ||| ||||  ||||||||||| | ||| ||| ||||||||||||||||  ||||    
T  1991999 aaaggcatgattaagtagcttgtttttattgaaaatt--atgacataaatttttg-ttgtctcctctaaattggttgtttcttgtacatgaaagtgaact 1992095  T
Q  337 cttgt 341  Q
    |||||    
T  1992096 cttgt 1992100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 3340162 - 3340114
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    ||||||||||||||||||||||||||| ||||| ||||  |||||||||    
T  3340162 ttgttttgttttattgtaaaaggcatgattaagcagcttgtttttattg 3340114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 11866054 - 11866106
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa 271  Q
    ||||||||||||||||| ||||||||| ||||||| ||  |||||||||||||    
T  11866054 ttgttttgttttattgtgaaaggcatgattaagtacctcttttttattgaaaa 11866106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 13196396 - 13196349
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttatt 266  Q
    |||||||||||||||||||||||||||  |||||||||  ||||||||    
T  13196396 ttgttttgttttattgtaaaaggcatgaataagtagcttctttttatt 13196349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 15629914 - 15629866
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    ||||||||||| ||||||||||||||| ||||| ||||  |||||||||    
T  15629914 ttgttttgtttcattgtaaaaggcatgattaagcagctcgtttttattg 15629866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 15945892 - 15945936
Alignment:
Q  223 tttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||  |||| |||| ||||||||||    
T  15945892 tttgttttattgtaaaaggcatgaataagcagcttatttttattg 15945936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 11497571 - 11497431
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11497571 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattct 11497472  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  11497471 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 11497431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 15253605 - 15253745
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  15253605 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttaattgtctcctcttatttggttgattct 15253704  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  15253705 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 15253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 42710690 - 42710550
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42710690 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatggcacaaaattttcattgtctcctcttatttgattgattct 42710591  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  42710590 tgtacataaaagcaaactcttgtgttttaagtcttcttgat 42710550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13822171 - 13822312
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  13822171 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 13822270  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  13822271 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 13822312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 22110216 - 22110357
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  22110216 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 22110315  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  |||||| |||||||||    
T  22110316 ttgtacataaaagcaaactcttgtgttttaagccttcttgat 22110357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 10630003 - 10630144
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaat-atcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| |||| |||||||||||||||  |||||||||||||  ||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  10630003 ttgttctgttttattgtgaaagacatggttaagtagcttgtttttattgaaaaacatcatgacataaattttttattgtctcctcttaattggttatttc 10630102  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  10630103 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 10630144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 15348771 - 15348631
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||| ||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  15348771 ttgttttgttttattgtgaaaggcatgattaagtagcttctttttgttgaaaaatatcatgacataaattttt-attgtctcctcttaattggttatttc 15348673  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||    
T  15348672 ttgtacatgaaagtaaactcttgtgttttaagttttcttgat 15348631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 18291274 - 18291412
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| |||||||||  ||||||| ||| |||||||| | ||| ||| ||||    
T  18291274 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgaca-taaatttttattatctcctctaaattggttgtttct 18291371  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||| ||||||||||  ||||||| ||||||||    
T  18291372 tgtacatgaaagtaaactcttgtgttttaagttttcttgat 18291412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 38426000 - 38426132
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  38426000 ttgttctgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttatttc 38426099  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    ||||| ||||||| ||||||||||  |||||||    
T  38426100 ttgtatatgaaagtaaactcttgtgttttaagt 38426132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 359
Target Start/End: Complemental strand, 18082409 - 18082275
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaa-tttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtaca 324  Q
    ||||||||||||||||||||||||||||||   ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| || |||| ||||||    
T  18082409 ttttattgtaaaaggcatggttaagtagctttgtttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttaattcctgtaca 18082310  T
Q  325 tgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||| ||||||||||  ||||||| ||| ||||    
T  18082309 tgaaagtaaactcttgtgctttaagttttcctgat 18082275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 3353913 - 3354048
Alignment:
Q  226 gttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaa-attttcattgtctcctcttatttgattgattcttgtac 323  Q
    |||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||| |||  |||| || ||||||||||| ||| ||  |||||||||    
T  3353913 gttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaatttttttatcgtctcctcttaattggttatttcttgtac 3354012  T
Q  324 atgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||  ||||||||||  ||||||| ||| ||||    
T  3354013 atgaaaataaactcttgtgttttaagttttcctgat 3354048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 359
Target Start/End: Complemental strand, 17485854 - 17485718
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgt 321  Q
    |||||||||||||| ||||||||| |||| |||||  ||||||||||||| || ||||||  |||||||  ||||||||||| | ||  ||| |||||||    
T  17485854 ttttgttttattgtgaaaggcatgattaaatagcttgtttttattgaaaa-attatgaca-taaatttttgttgtctcctctaaattagttgtttcttgt 17485757  T
Q  322 acatg-aaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||| ||||  |||||||||  ||||||| ||||||||    
T  17485756 acatgaaaagtgaactcttgtgttttaagttttcttgat 17485718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 15864766 - 15864814
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  15864766 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 15864814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 45235181 - 45235053
Alignment:
Q  223 tttgttttattgtaaaaggcatggttaagtagctaattttt-attgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgt 321  Q
    ||||||| ||||  ||||||||| ||||||| || |||||| |||||||||   |||||| ||| ||||  ||||||||||| | ||  ||| |||||||    
T  45235181 tttgtttaattgcgaaaggcatgattaagtatcttattttttattgaaaatt--atgacataaatttttg-ttgtctcctctaaatttgttgtttcttgt 45235085  T
Q  322 acatgaaagcaaactcttgtaatttaagtctt 353  Q
    |||||||||  |||||||||  ||||||||||    
T  45235084 acatgaaagtgaactcttgtgttttaagtctt 45235053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 12744 - 12884
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12744 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttatggaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattct 12843  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  12844 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 12884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 21955332 - 21955472
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21955332 ttgttttgtttcattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattct 21955431  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  21955432 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 21955472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 21381349 - 21381490
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  21381349 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 21381448  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  21381449 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 21381490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 21099748 - 21099608
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  21099748 ttgttttgttttattctaaaaggcatggttaagtagctaatttttatggaaaatatcacgacacaaaattttcattgtctcctcttatttggttgattct 21099649  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  21099648 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 21099608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 23910697 - 23910838
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  23910697 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 23910796  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  ||||||||||||||||    
T  23910797 ttgtacataaaagcaaactcttgtgttttaagtcttcttgat 23910838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 8313724 - 8313865
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  8313724 ttgttttgttttattgtaaaaggcatgattaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 8313823  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  |||||| |||||||||    
T  8313824 ttgtacatgaaagcaaactcttgtgttttaagccttcttgat 8313865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 8323809 - 8323665
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaata---tcatgacacaaaatttt-cattgtctcctcttatttgattga 314  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |   ||||||||||||||||| ||||||||||||||||||  ||||    
T  8323809 ttgttttgttttattgtaaaaggcatagttaagcagctaatttttattgaaaaaaaaatcatgacacaaaatttttcattgtctcctcttattttgttga 8323710  T
Q  315 ttcttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  8323709 ttcttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 8323665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 17619998 - 17620139
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  17619998 ttgttctgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttatttc 17620097  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  17620098 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 17620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 20039946 - 20039805
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||| || | |||||||||||||| ||| ||  |||    
T  20039946 ttgttctgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaatttcttattgtctcctcttaattggttatttc 20039847  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  20039846 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 20039805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 21854737 - 21854596
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| ||||||| |||||| ||| ||  |||    
T  21854737 ttgttctgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaattttttattgtctactcttaattggttatttc 21854638  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  21854637 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 21854596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 21942395 - 21942265
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||  ||||||||| ||||||||||  ||||||||||||| || |||||| ||| |||| |||||||||||||| | | || |||||    
T  21942395 ttgttttgtttaattgcgaaaggcatgattaagtagcttgtttttattgaaaa-attatgacataaattttttattgtctcctcttaataggttaattct 21942297  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagt 350  Q
    |||||||||||| ||||||||||  |||||||    
T  21942296 tgtacatgaaagtaaactcttgtgttttaagt 21942265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 20711727 - 20711861
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| |||| ||||||||||||||||||||  |||||| ||||| | | |||| || |||| ||| |||||||||||| | ||| ||| ||||||    
T  20711727 ttttgttttcttgtgaaaggcatggttaagtagcttgtttttaatgaaataaagcatggcataaaaattttattgtctcctctcagttggttgtttcttg 20711826  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttct 355  Q
    ||||||||||  ||||||| || ||||||| ||||    
T  20711827 tacatgaaagtgaactcttttattttaagttttct 20711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 19365288 - 19365398
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaa--aattttcattgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||||| ||    |||| |||||||||||||| ||| | | ||    
T  19365288 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataatttttttttattgtctcctctta-ttggtcgttt 19365385  T
Q  317 cttgtacatgaaa 329  Q
    |||||||||||||    
T  19365386 cttgtacatgaaa 19365398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 16419567 - 16419435
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaa---aattttcattgtctcctcttatttgattgat 315  Q
    ||||||||||| || || ||||||||| ||||||||||  ||||||||||||| ||||||||| ||     |||| |||||||||||||| ||| | | |    
T  16419567 ttgttttgtttcatagtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataattttttttttattgtctcctctta-ttggtcgtt 16419470  T
Q  316 tcttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    ||||||||||||||| ||||||||||  |||||||    
T  16419469 tcttgtacatgaaagtaaactcttgtgttttaagt 16419435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 22369222 - 22369270
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| |||| ||||||||||    
T  22369222 ttgttttgttttattgtaaaaggcatgaataagcagcttatttttattg 22369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 329
Target Start/End: Original strand, 20375071 - 20375181
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||| || |||||||  ||||||||| |||||  |||  |||||||||||||| | |||||| ||| ||||  |||| |||||| | ||| ||| ||||    
T  20375071 ttgttatgatttattgcgaaaggcatgattaagcggcttgtttttattgaaaattttatgacataaattttttgttgtttcctctaaattggttgtttct 20375170  T
Q  319 tgtacatgaaa 329  Q
    |||||||||||    
T  20375171 tgtacatgaaa 20375181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 19766808 - 19766856
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  19766808 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 19766856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 23514325 - 23514465
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23514325 ttgttttgttttattgtaaaagacatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattct 23514424  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  23514425 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 23514465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 9582171 - 9582311
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9582171 ttgttttgttttattgtaaaaggcatggttaagtagctattttttattgaaaatatcatgacacaaaattttcattgtctccttttatttgattgattct 9582270  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  9582271 tgtacaagaaagcaaactcttgtgttttaagtcttcttgat 9582311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 14550354 - 14550494
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  14550354 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctccttttattttgttgattct 14550453  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  14550454 tgtacatgaaagcaaactcttgtgttttaagtcttcttgat 14550494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 8717122 - 8717263
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||     
T  8717122 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgatta 8717221  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  8717222 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 8717263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13673113 - 13673254
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  13673113 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 13673212  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  ||||||||||||||||    
T  13673213 ttgtacataaaagcaaactcttgtgttttaagtcttcttgat 13673254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 18594224 - 18594083
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  18594224 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 18594125  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  |||| |||||||||||    
T  18594124 ttgtacataaaagcaaactcttgtgttttaggtcttcttgat 18594083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 18617460 - 18617601
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  18617460 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 18617559  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  |||| |||||||||||    
T  18617560 ttgtacataaaagcaaactcttgtgttttaggtcttcttgat 18617601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 16150441 - 16150299
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaa-ttttcattgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16150441 ttgttttgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacacaaaaattttcattgtctcctcttatttgattgatt 16150342  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||| |||||||||||||||  ||||||||||||||||    
T  16150341 cttgtacataaaagcaaactcttgtgttttaagtcttcttgat 16150299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 539716 - 539576
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||   ||||||||| |||||||| |||||||||||||| ||| | | ||     
T  539716 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaatcaatcatgacataaaatttttattgtctcctctta-ttggtcgtttt 539618  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  539617 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 539576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 10432699 - 10432559
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||  ||||||| |||||||||||||| ||| ||  |||    
T  10432699 ttgttttgttttattgtgaaaggcatagttaagtagcttatttttattgaaaagtatcatgaca-taaatttttattgtctcctcttaattggttatttc 10432601  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||| | ||||||||  ||||||| ||||||||    
T  10432600 ttgtacatgaaagtatactcttgtgttttaagttttcttgat 10432559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13657180 - 13657321
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| ||||| | ||||||||| | |||||| |||||||||||||| ||| | | |||    
T  13657180 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaataaatcatgacatataatttttattgtctcctcttagttggtcgtttc 13657279  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||| ||| ||||||||    
T  13657280 ttgtacatgaaagtgaactcttgtatttttagttttcttgat 13657321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 16466573 - 16466442
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||   ||||||||| |||||||| |||||||||||||| ||| | | |||    
T  16466573 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaatcaatcatgacataaaatttttattgtctcctctta-ttggtcgtttc 16466475  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    ||||||||||||  ||||||||||  |||||||    
T  16466474 ttgtacatgaaattaaactcttgtgttttaagt 16466442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 11927863 - 11927735
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||   ||||||||| |||||||| ||| |||||||||| ||| | | ||||||    
T  11927863 ttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaatcaatcatgacataaaatttttattatctcctctta-ttggtcgtttcttg 11927765  T
Q  321 tacatgaaagcaaactcttgtaatttaagt 350  Q
    |||||||||| ||||||||||  |||||||    
T  11927764 tacatgaaagtaaactcttgtgttttaagt 11927735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 336
Target Start/End: Original strand, 16531364 - 16531479
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||||| ||| |||| |||||||||| ||| ||| | | ||||    
T  16531364 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataaattttttattgtctcctttta-ttggtcgtttct 16531461  T
Q  319 tgtacatgaaagcaaact 336  Q
    |||||||||||| |||||    
T  16531462 tgtacatgaaagtaaact 16531479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 16634298 - 16634183
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||||| ||| |||| |||||||||| ||| ||| | | ||||    
T  16634298 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataaattttttattgtctcctttta-ttggtcgtttct 16634201  T
Q  319 tgtacatgaaagcaaact 336  Q
    |||||||||||| |||||    
T  16634200 tgtacatgaaagtaaact 16634183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 12566278 - 12566416
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| |||| || ||  ||||||||||||| ||||||||| |||  ||| |||||||||||| | ||| ||| ||||    
T  12566278 ttgttttgttttattgtgaaaggcatgattaaataacttgtttttattgaaaa-atcatgacataaatgttt-attgtctcctctaaattggttgtttct 12566375  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||| |||||||| |  ||||||| ||||||||    
T  12566376 tgtacatgaaagtaaactcttatgttttaagttttcttgat 12566416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 13355496 - 13355634
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| || ||||||  |||||||  ||||||||||| | ||| ||| ||||    
T  13355496 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-attatgaca-taaatttttgttgtctcctctaaattggttgtttct 13355593  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||  |||| |||||  ||||||| ||||||||    
T  13355594 tgtacatgaaattaaacacttgtgttttaagttttcttgat 13355634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 48802807 - 48802670
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||  ||||||||| ||||||||||  ||||||||||||||   |||||| ||| ||||  ||||||||||| | ||||||| ||||    
T  48802807 ttgttttgtttaattgcgaaaggcatgattaagtagcttgtttttattgaaaatt--atgacataaatttttg-ttgtctcctctaaattgattgtttct 48802711  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  || ||||||  ||||||| ||||||||    
T  48802710 tgtacatgaaagtgaaatcttgtgttttaagttttcttgat 48802670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 359
Target Start/End: Original strand, 20107558 - 20107688
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatg 326  Q
    ||||||||  |||| |||| ||||||||||  ||| ||||||||| || |||||| ||| ||||  ||||||||||| | ||| ||| ||||||||||||    
T  20107558 ttttattgcgaaagacatgattaagtagcttgtttctattgaaaa-attatgacataaatttttg-ttgtctcctctaagttggttgtttcttgtacatg 20107655  T
Q  327 aaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||  |||||||||| ||||||| ||||||||    
T  20107656 aaagtgaactcttgtattttaagttttcttgat 20107688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 360
Target Start/End: Original strand, 4311998 - 4312137
Alignment:
Q  219 ttgttttgtttta-ttgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||| | |||| ||||||||| ||||||||||  ||||||||||||  || ||||||  |||||||  ||||||||||| | ||| ||| |||    
T  4311998 ttgttttgtttaaattgtgaaaggcatgattaagtagcttgtttttattgaaa--attatgaca-taaatttttgttgtctcctctaaattggttgtttc 4312094  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgatg 360  Q
    |||||||||||||  ||||||| |  |||||||  ||||||||    
T  4312095 ttgtacatgaaagtgaactcttttgttttaagttctcttgatg 4312137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 824903 - 824951
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  824903 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 824951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 15207519 - 15207471
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  15207519 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 15207471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 15917716 - 15917668
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  15917716 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 15917668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 23711634 - 23711494
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23711634 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatggcacaaaattttcattgtctcctcttatttgattgattct 23711535  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  23711534 tgtacataaaagcaaactcttgtgttttaagtcttcttgat 23711494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 230 - 359
Target Start/End: Complemental strand, 20791662 - 20791533
Alignment:
Q  230 tattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatgaaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20791662 tattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattcttgtacatgaaa 20791563  T
Q  330 gcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  ||||||||||||||||    
T  20791562 gcaaactcttgtgttttaagtcttcttgat 20791533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 15734791 - 15734932
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||     
T  15734791 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgatta 15734890  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  15734891 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 15734932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 20596787 - 20596646
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  20596787 ttgttttgttttattgtaaaaggcatgggtaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 20596688  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  20596687 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 20596646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 20603073 - 20602932
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  20603073 ttgttttgttttattgtaaaaggcatgggtaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 20602974  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  20602973 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 20602932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 20609364 - 20609223
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  20609364 ttgttttgttttattgtaaaaggcatgggtaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttattttgttgattc 20609265  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  20609264 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 20609223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 24939793 - 24939926
Alignment:
Q  226 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  24939793 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaactttcattgtctcctcttattttgttgattcttgtacat 24939892  T
Q  326 gaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||  ||||||||||||||||    
T  24939893 gaaagcaaactcttgtgttttaagtcttcttgat 24939926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 20621419 - 20621560
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  20621419 ttgttttgttttattgtaaaaggcatggttaagtagctaatttatattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 20621518  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  ||||||||||||||||    
T  20621519 ttgtacataaaagcaaactcttgtgttttaagtcttcttgat 20621560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 18072157 - 18072298
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||  |||||||    
T  18072157 ttgttttgttttattgtaaaaggcatgattaagtagctaatttttattgaaaacatcatgacacaaaaaatttcattgtctcctcttattttgttgattc 18072256  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  |||||| |||||||||    
T  18072257 ttgtacatgaaagcaaactcttgtgttttaagccttcttgat 18072298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 23747307 - 23747448
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  23747307 ttgttttgttttatggtaaaaggcatagttaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 23747406  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||| ||| |||||||||||||||  ||||||||||||||||    
T  23747407 ttgtgcataaaagcaaactcttgtgttttaagtcttcttgat 23747448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 24954132 - 24953990
Alignment:
Q  219 ttgttttgttttattgtaaaa-ggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||    
T  24954132 ttgttttgttttattgtaaaaaggcatagttaagtagctaatttttattgaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttgatt 24954033  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||| | ||| |||||||||||||||  ||||||||||||||||    
T  24954032 cttatgcataaaagcaaactcttgtgttttaagtcttcttgat 24953990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 20445788 - 20445646
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttc-attgtctcctcttatttgattgatt 316  Q
    ||||| ||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||| ||  ||||  |||||||||||||| ||| || |||    
T  20445788 ttgttctgttttattgtgaaatgcatggttaagtagcttatttttattgaaaaatatcatgacataattttttttattgtctcctcttaattggttaatt 20445689  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||| ||||||||||  ||||||| ||||||||    
T  20445688 cttgtacatgaaagtaaactcttgtgctttaagttttcttgat 20445646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 23601601 - 23601460
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||| ||||||||||||||   |||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  23601601 ttgttctgttttattgtgaaagggatggttaagtagcttgattttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttatttc 23601502  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  23601501 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 23601460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 24219091 - 24219231
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||| |||||||||| ||||||||| ||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  24219091 ttgtttcgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaaatatcatgacataaattttt-attgtctcctcttaattggttatttc 24219189  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||    
T  24219190 ttgtacatgaaagtaaactcttgtgttttaagttttcttgat 24219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 20574720 - 20574857
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||  |||| |||| ||||||||||  ||||||||||||||   |||||| ||| ||||  ||||||||||| | ||| ||| ||||    
T  20574720 ttgttttgtttaattgcgaaagacatgattaagtagcttgtttttattgaaaatt--atgacataaatttttg-ttgtctcctctaaattggttgtttct 20574816  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||  ||||||| ||||||||    
T  20574817 tgtacatgaaagtgaactcttgtgttttaagtattcttgat 20574857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 21281868 - 21281816
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa 271  Q
    ||||||||||||||||| ||||||||| ||||||||||  |||||||||||||    
T  21281868 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa 21281816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 22854836 - 22854884
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  22854836 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 22854884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 12572 - 12433
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12572 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttggttgattct 12473  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  12472 tgtacatgaaagcaaactcttgt-ttttaagtcttcttgat 12433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 221 - 359
Target Start/End: Original strand, 116803 - 116941
Alignment:
Q  221 gttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||    
T  116803 gttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacataaaattttcattgtctcctcttatttggttgattattg 116902  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||| |||||||||||||||  ||||||||||||||||    
T  116903 tacataaaagcaaactcttgtgttttaagtcttcttgat 116941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 25356768 - 25356909
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||    
T  25356768 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttgattc 25356867  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  25356868 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 25356909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 22664343 - 22664485
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgaca-caaaattttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  22664343 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacataaaaattttcattgtctcctcctattcgattgattc 22664442  T
Q  318 ttgtacatgaaagc-aaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||| ||||||||||  ||||||||||||||||    
T  22664443 ttgtacatgaaagcaaaactcttgtgttttaagtcttcttgat 22664485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 22045618 - 22045477
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||    
T  22045618 ttgttctgttttattgtaaaaggcatagttaagtagctaatttttattgaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttgattc 22045519  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  22045518 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 22045477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 24796242 - 24796101
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||    
T  24796242 ttgttctgttttattgtaaaaggcatagttaagtagctaacttttattgaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttgattc 24796143  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  24796142 ttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 24796101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 16774907 - 16775049
Alignment:
Q  219 ttgttttgttttattgtaaaa-ggcatggttaagtagctaatttttattgaaaatatcatgacaca-aaattttcattgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||  ||||||    
T  16774907 ttgttttgttttattgtaaaaaggcatagttaagtagctaatttttattgaaaaaatcatgacacacaaattttcattgtctcctcttattttgttgatt 16775006  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||| |||||||||||||||  |||||| |||||||||    
T  16775007 cttgtacataaaagcaaactcttgtgttttaagccttcttgat 16775049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 17589664 - 17589806
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaata-tcatgacacaaaa-ttttcattgtctcctcttatttgattgatt 316  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||  ||||||    
T  17589664 ttgttctgttttattgtaaaaggcatagttaagtagctaatttttattgaaaaaaatcatgacacaaaaattttcattgtctcctcttaatttgttgatt 17589763  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||| |||||||||||||||||||  ||||||| ||||||||    
T  17589764 cttgtgcatgaaagcaaactcttgtgttttaagttttcttgat 17589806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 27626850 - 27626984
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||       |||    
T  27626850 ttgttttgttttattgtaaaaggcatgattaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttatt-------ttc 27626942  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||||||||||||||  |||||| |||||||||    
T  27626943 ttgtacataaaagcaaactcttgtgttttaagccttcttgat 27626984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 25145722 - 25145581
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| ||  |||    
T  25145722 ttgttctgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttatttc 25145623  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  25145622 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 25145581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 24517275 - 24517141
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| |||| ||||||||||||||||||||  |||||| ||||| | | |||| || |||| ||| |||||||||||| | ||| ||| ||||||    
T  24517275 ttttgttttcttgtgaaaggcatggttaagtagcttgtttttaatgaaataaagcatggcataaaaattttattgtctcctctcagttggttgtttcttg 24517176  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttct 355  Q
    ||||||||||  ||||||| || ||||||| ||||    
T  24517175 tacatgaaagtgaactcttttattttaagttttct 24517141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 359
Target Start/End: Original strand, 24501357 - 24501491
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgt 321  Q
    ||||||||| |||| ||||||||| ||||||||||  |||||||||| |||   |||||| ||| ||||  ||||||||||| | ||| ||| |||||||    
T  24501357 ttttgttttgttgtgaaaggcatgattaagtagcttgtttttattgagaatt--atgacataaatttttg-ttgtctcctctaaattggttgtttcttgt 24501453  T
Q  322 acatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||  |||||||||  ||||||| ||||||||    
T  24501454 acatgaaagtgaactcttgtgttttaagtattcttgat 24501491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 24820971 - 24820854
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaaattttc--attgtctcctcttatttgattgattcttgtac 323  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||| || ||| ||  ||||   |||||||||||||| ||| ||  |||||||||    
T  24820971 ttttattgtgaaaggcatggttaagtagcttgtttttattggaaaatattattacataatttttttttattgtctcctcttaattggttatttcttgtac 24820872  T
Q  324 atgaaagcaaactcttgt 341  Q
    ||||||| ||||||||||    
T  24820871 atgaaagtaaactcttgt 24820854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 25371913 - 25371776
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| ||||| ||||||||| |||||||||  |||||||||||||  || ||||||  |||||||  ||||||||||| |  || ||| ||||    
T  25371913 ttgttttgtttaattgtgaaaggcatgattaagtagcctatttttattgaaa--attatgaca-taaatttttgttgtctcctctaagctggttgtttct 25371817  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    | ||||||||||  ||| |||||  ||||||| ||||||||    
T  25371816 tctacatgaaagtgaacacttgtgttttaagttttcttgat 25371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 330
Target Start/End: Complemental strand, 25366710 - 25366602
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||| |||  ||||||||| ||||||||||  ||||||||||||  || ||||||  |||||||  ||||||||||| | | | ||| ||||    
T  25366710 ttgttttgttttgttgcgaaaggcatgattaagtagcttgtttttattgaaa--attatgaca-taaatttttgttgtctcctctaaatcggttgtttct 25366614  T
Q  319 tgtacatgaaag 330  Q
    ||||||||||||    
T  25366613 tgtacatgaaag 25366602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 27046132 - 27046272
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27046132 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatggcacaaaattttcattgtctcctcttatttgattgattct 27046231  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  27046232 tgtacataaaagcaaactcttgtgttttaagtcttcttgat 27046272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 226 - 359
Target Start/End: Original strand, 20236732 - 20236865
Alignment:
Q  226 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacat 325  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  20236732 gttttattgtaaaaggcatggtcaagtagctaattcttattgaaaatatcatgacacaaaattttcattatctcctcttatttggttgattcttgtacat 20236831  T
Q  326 gaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||  ||||||||||||||||    
T  20236832 gaaagcaaactcttgtgttttaagtcttcttgat 20236865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 21799621 - 21799480
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  |||||||    
T  21799621 ttgttttgttttattgaaaaaggcatgattaagtagctaatttttattgaaaacatcatgacacaaaaattttcattgtctcctcttattttgttgattc 21799522  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||||||||||||  |||||| |||||||||    
T  21799521 ttgtacatgaaagcaaactcttgtgttttaagccttcttgat 21799480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 17095560 - 17095437
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgattc 317  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||  |||||||    
T  17095560 ttgtttcgttttattgtgaaaggcatgtttaagtagctaatttttattgaaagtatcgtgacacaaaaattttcattgtctcctcttattttgttgattc 17095461  T
Q  318 ttgtacatgaaagcaaactcttgt 341  Q
    ||||||||||||||||||||||||    
T  17095460 ttgtacatgaaagcaaactcttgt 17095437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 3989352 - 3989493
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| |||||||||||||| ||| || ||||    
T  3989352 ttgttttgttttattgtgaaaggcatggttaagtagcttatttttattgaaaaatatcatgacataaattttttattgtctcctcttaattggttaattc 3989451  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||| |||| ||||||||||  ||||||| ||||||||    
T  3989452 ttgtacataaaagtaaactcttgtgttttaagttttcttgat 3989493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 359
Target Start/End: Original strand, 8652334 - 8652443
Alignment:
Q  247 ttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacatgaaagcaaactcttgtaattt 346  Q
    ||||||||||  ||||||||||||||   |||||| ||| ||||  |||| |||||| | ||| ||| ||||||||||||||||  |||||||||  |||    
T  8652334 ttaagtagcttgtttttattgaaaatt--atgacataaatttttg-ttgtatcctctaaattggttgtttcttgtacatgaaagtgaactcttgtgtttt 8652430  T
Q  347 aagtcttcttgat 359  Q
    |||| ||||||||    
T  8652431 aagttttcttgat 8652443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 122627 - 122767
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||     
T  122627 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatggcacaaaattttcattgtctccacttatttgattgattca 122726  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  122727 tgtacataaaagcaaactcttgtgttttaagtcttcttgat 122767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 24851 - 24983
Alignment:
Q  226 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacac-aaaattttcattgtctcctcttatttgattgattcttgtaca 324  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  24851 gttttattgtgaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaaattttcattgtctcctcttatttg-ttgattcttgtaca 24949  T
Q  325 tgaaagcaaactcttgtaatttaagtcttcttga 358  Q
    | |||||||||||||||  |||||||||||||||    
T  24950 taaaagcaaactcttgtgttttaagtcttcttga 24983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 146 - 4
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaata-tcatgacacaaaa-ttttcattgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||  ||||||    
T  146 ttgttttgttttattgtaaaaggcatggttaagtagctaatttctattgaaaaaaatcatgacacaaaaattttcattgtcgcctcttattttgttgatt 47  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  46 cttgtacatgaaagcaaactcttgtgttttaagtcttcttgat 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0404 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0404
Description:

Target: scaffold0404; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 295 - 437
Alignment:
Q  219 ttgttttgttttattgtaaaa-ggcatggttaagtagctaatttttattgaaaatatcatgacacaaaa-ttttcattgtctcctcttatttgattgatt 316  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||||    
T  295 ttgttttgttttattgtaaaaaggcatagttaagtagctaatttttattgaaaaaatcatgacacaaaaattttcattgtctcctcttattttgttgatt 394  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||    
T  395 cttgtgcataaaagcaaactcttgtgttttaagtcttcttgat 437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 7918 - 7843
Alignment:
Q  226 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7918 gttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcct 7843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 359
Target Start/End: Complemental strand, 252828 - 252685
Alignment:
Q  217 cattgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgat 315  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||| | ||||||||| |||||||| |||||||||||||| ||| | | |    
T  252828 cattgttttgttttattgtaaaaggcatggttaagtagcttgtttttaatgaaataaatcatgacataaaatttttattgtctcctcttagttgttcgtt 252729  T
Q  316 tcttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||| ||||||||||  ||||||| ||| ||||    
T  252728 tcttgtacatgaaagtaaactcttgtgttttaagttttcctgat 252685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 355453 - 355315
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaa-attttcattgtctcctcttatttgattgatt 316  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||| |||  |||| |||||||||||||| ||| ||  ||    
T  355453 ttgttctgttttattgtgaaaggcatggttaagtagcttatttttattgaaaaatatcgtgacataaatttttttattgtctcctcttaattggttattt 355354  T
Q  317 cttgtacatgaaagcaaactcttgtaatttaagtcttct 355  Q
    ||||||||||||||  |||||||||| ||| ||| ||||    
T  355353 cttgtacatgaaagtgaactcttgtatttttagttttct 355315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 18920 - 18872
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  18920 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 18872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 51450 - 51312
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||| |||||| | |||||||||||||| ||  || ||||    
T  51450 ttgttttgttttattgtgaaagacatggttaagtagcttatttttattgaaaaatatcatgacataaaattcttattgtctcctcttaattagttaattc 51351  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttctt 356  Q
    ||||||||||||| ||||||||||  ||||||| |||||    
T  51350 ttgtacatgaaagtaaactcttgtgctttaagttttctt 51312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 17502 - 17361
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||| ||| |||| ||||||| |||||| ||| ||  |||    
T  17502 ttgttctgttttattgtgaaaggcatggttaagtagcttgtttttattgaaaaatatcatgacataaattttttattgtctgctcttaattggttatttc 17403  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  |||||||||| ||||||| ||||||||    
T  17402 ttgtacatgaaagtgaactcttgtattttaagttttcttgat 17361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 115904 - 116045
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||  |||| | ||||||||| |||||||| |||||||||||||| ||| | | |||    
T  115904 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaaagaaataaatcatgacataaaatttttattgtctcctcttagttggtcgtttc 116003  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||| ||||||||||  ||||||| ||| ||||    
T  116004 ttgtacatgaaagtaaactcttgtgttttaagttttcctgat 116045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 120208 - 120349
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||  |||| | ||||||||| |||||||| |||||||||||||| ||| | | |||    
T  120208 ttgttttgttttattgtaaaaggcatggttaagtagcttgtttttaaagaaataaatcatgacataaaatttttattgtctcctcttagttggtcgtttc 120307  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||| ||||||||||  ||||||| ||| ||||    
T  120308 ttgtacatgaaagtaaactcttgtgttttaagttttcctgat 120349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 10678 - 10816
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||| ||| ||||||||| ||| |||| |||||||||||| | ||| ||| ||||    
T  10678 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattggaaa-atcatgacataaattttt-attgtctcctctaaattggttgtttct 10775  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||||||||||| ||||||||    
T  10776 tgtacatgaaagtgaactcttgtaatttaagttttcttgat 10816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0679 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 7269 - 7409
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||  ||||||||| ||||||||||  |||||| ||||| | ||||||||| |||||||| |||||||||||||| ||||||| |||    
T  7269 ttgttttgttttattgcgaaaggcatgattaagtagcttgtttttaatgaaataaatcatgacataaaatttt-attgtctcctcttagttgattgtttc 7367  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||||  ||||||||||  |||||| ||||||||    
T  7368 ttgtacatgaaagtgaactcttgtatcttaagttttcttgat 7409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 222 - 348
Target Start/End: Complemental strand, 4565 - 4438
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| |||| ||||||||||||||||||||  |||||| ||||| | ||||||||| ||| |||| |||||||||||||| ||| ||| ||||||    
T  4565 ttttgttttgttgtgaaaggcatggttaagtagcttgtttttaatgaaataaatcatgacataaattttttattgtctcctcttagttggttgtttcttg 4466  T
Q  321 tacatgaaagcaaactcttgtaatttaa 348  Q
    |||||||||| ||||||||||| |||||    
T  4465 tacatgaaagtaaactcttgtattttaa 4438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 371 - 502
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaaattttcattgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||| |||| ||||||||| ||| |||| |||||||||||||| ||| | | |||    
T  371 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaaaaatcatgacataaattttttattgtctcctctta-ttggtcgtttc 469  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    ||||||||||||| ||||||||||  |||||||    
T  470 ttgtacatgaaagtaaactcttgtgttttaagt 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 9449 - 9592
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagc-taatttttattg-aaaatatcatgacacaaaattttca-ttgtctcctcttatttgattgat 315  Q
    ||||| ||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||| ||| |||| | |||||| |||||| ||| ||  |    
T  9449 ttgttctgttttattgtgaaaggcatggttaagtagcttattttttattgaaaaatatcatgacataaattttttatttgtcttctcttaattggttatt 9548  T
Q  316 tcttgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||||| ||||||||||  ||||||| ||||||||    
T  9549 tcttgtacatgaaagtaaactcttgtgttttaagttttcttgat 9592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 44715 - 44830
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacat 325  Q
    ||||||||| ||||||||||||| ||||||  ||||||||||||| |||||||||| ||| |||| || ||||||||||| ||| || ||||||||||||    
T  44715 ttttattgtgaaaggcatggttaggtagcttgtttttattgaaaaatatcatgacataaattttttatcgtctcctcttaattggttaattcttgtacat 44814  T
Q  326 gaaagcaaactcttgt 341  Q
    ||||| ||||||||||    
T  44815 gaaagtaaactcttgt 44830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 52104 - 52219
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattgaaaa-tatcatgacacaaaattttcattgtctcctcttatttgattgattcttgtacat 325  Q
    ||||||||| ||||||||||||| ||||||  ||||||||||||| |||||||||| ||| |||| || ||||||||||| ||| || ||||||||||||    
T  52104 ttttattgtgaaaggcatggttaggtagcttgtttttattgaaaaatatcatgacataaattttttatcgtctcctcttaattggttaattcttgtacat 52203  T
Q  326 gaaagcaaactcttgt 341  Q
    ||||| ||||||||||    
T  52204 gaaagtaaactcttgt 52219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 90533 - 90663
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||||| ||| |||| |||||||||||||| ||| | | ||||    
T  90533 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataaatttttaattgtctcctctta-ttggtcgtttct 90630  T
Q  319 tgtacatgaaag-caaactcttgtaatttaagt 350  Q
    ||||||||||||  ||||||||||  |||||||    
T  90631 tgtacatgaaagtaaaactcttgtgttttaagt 90663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 9275 - 9137
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||||||||| |||| |||| ||||||||||  ||||||||||||| || ||||||  |||||||  ||||||||||| | ||| ||| ||||    
T  9275 ttgttttgttttattgtgaaagacatgattaagtagcttctttttattgaaaa-attatgaca-taaatttttgttgtctcctctaaattggttgtttct 9178  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||  ||||||||||  ||||||| ||||||||    
T  9177 tgtacatgaaattaaactcttgtgttttaagttttcttgat 9137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 350
Target Start/End: Complemental strand, 59578 - 59446
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaa---aattttcattgtctcctcttatttgattgat 315  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||||| ||     |||| |||||||||||||| ||| ||| |    
T  59578 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataattttttttttattgtctcctctta-ttggttgtt 59481  T
Q  316 tcttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    ||||||||||||||| ||||||||||  |||||||    
T  59480 tcttgtacatgaaagtaaactcttgtgttttaagt 59446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1941 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 1193 - 1059
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| |||| ||||||||||||||||||||  |||||| ||||| | | |||| || |||| ||| |||||||||||| | ||| ||| ||||||    
T  1193 ttttgttttcttgtgaaaggcatggttaagtagcttgtttttaatgaaataaagcatggcataaaaattttattgtctcctctcagttggttgtttcttg 1094  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttct 355  Q
    ||||||||||  ||||||| || ||||||| ||||    
T  1093 tacatgaaagtgaactcttttattttaagttttct 1059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 222 - 359
Target Start/End: Complemental strand, 36058 - 35920
Alignment:
Q  222 ttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaa-atatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| |||| ||||||||||||||||||||  |||||| ||||| | | |||| || |||||||| |||||||||||||| |||  |  ||||||    
T  36058 ttttgttttcttgtgaaaggcatggttaagtagcttgtttttaatgaaataaagcatggcataaaatttttattgtctcctcttagttgggtatttcttg 35959  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||  |||||||  | ||||||| ||||||||    
T  35958 tacatgaaagtgaactctttcattttaagttttcttgat 35920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 1195 - 1057
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||||||||| |||| |||||||||| ||||||||||  ||||||||||||| || ||||||  |||||||  | ||||||||| | ||| ||| ||||    
T  1195 ttgttttgtttaattgcaaaaggcatgattaagtagcttgtttttattgaaaa-attatgaca-taaatttttgtggtctcctctaaattggttgtttct 1098  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||  ||||||| ||| ||||    
T  1097 tgtacatgaaagtgaactcttgtgttttaagttttcgtgat 1057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 101 - 231
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttc-attgtctcctcttatttgattgattc 317  Q
    ||||||||||||||||| ||||||||| ||||||||||  ||||||||||||| ||||||||| ||  ||||  |||||||||||||||| | |   |||    
T  101 ttgttttgttttattgtgaaaggcatgattaagtagcttgtttttattgaaaa-atcatgacataattttttttattgtctcctcttattgg-tcatttc 198  T
Q  318 ttgtacatgaaagcaaactcttgtaatttaagt 350  Q
    |||||||||||||  |||||||||  |||||||    
T  199 ttgtacatgaaagtgaactcttgtgttttaagt 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 10416 - 10550
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||| |||| ||||||||| ||||||||||  ||||||||||||| || ||||||  |||||||  ||||||||||| |    |||| || |    
T  10416 ttgttttgtttttttgtgaaaggcatgattaagtagcttgtttttattgaaaa-attatgaca-taaatttttgttgtctcctctaa----attggttgt 10509  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    |||||||||||| ||||||||||  ||||||| ||||||||    
T  10510 tgtacatgaaagtaaactcttgtgttttaagttttcttgat 10550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 19137 - 19020
Alignment:
Q  227 ttttattgtaaaaggcatggttaagtagctaatttttattg-aaaatatcatgacacaaaattttc--attgtctcctcttatttgattgattcttgtac 323  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||| || ||| ||  ||||   |||||||||||||| ||| ||  |||||||||    
T  19137 ttttattgtgaaaggcatggttaagtagcttgtttttattggaaaatattattacataatttttttttattgtctcctcttaattggttatttcttgtac 19038  T
Q  324 atgaaagcaaactcttgt 341  Q
    ||||||| ||||||||||    
T  19037 atgaaagtaaactcttgt 19020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 7055 - 7193
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    ||||| |||||| |||  ||||||||| ||||||||||  ||||||||||||||   |||||| ||| |||| |||||||||||| | ||| ||| ||||    
T  7055 ttgttatgttttgttgcgaaaggcatgattaagtagcttgtttttattgaaaatt--atgacataaattttttattgtctcctctaaattggttgtttct 7152  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  || ||||||  ||||||| | ||||||    
T  7153 tgtacatgaaagagaattcttgtgttttaagtttccttgat 7193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 359
Target Start/End: Original strand, 11651 - 11788
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||| |||  ||||||||| ||||||||||  ||||||||||||  || ||||||  |||||||  ||||||||||| | | | ||| ||||    
T  11651 ttgttttgttttgttgcgaaaggcatgattaagtagcttgtttttattgaaa--attatgaca-taaatttttgttgtctcctctaaatcggttgtttct 11747  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||  ||||||| ||||||||    
T  11748 tgtacatgaaagtgaactcttgtgttttaagttttcttgat 11788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 233747 - 233610
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattct 318  Q
    |||||||||||| |||  ||||||||| ||||||||||  ||||||||||||  || ||||||  |||||||  ||||||||||| | | | ||| ||||    
T  233747 ttgttttgttttgttgcgaaaggcatgattaagtagcttgtttttattgaaa--attatgaca-taaatttttgttgtctcctctaaatcggttgtttct 233651  T
Q  319 tgtacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||||  |||||||||  ||||||| ||||||||    
T  233650 tgtacatgaaagtgaactcttgtgttttaagttttcttgat 233610  T

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Target: scaffold0278 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 13999 - 13864
Alignment:
Q  221 gttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| ||||  ||||||||| ||||||||||  ||||||||||||  || ||||||  |||||||  ||||||||||| | ||  ||| ||||||    
T  13999 gttttgtttaattgcgaaaggcatgattaagtagcttgtttttattgaaa--attatgaca-taaatttttgttgtctcctctaaattagttgtttcttg 13903  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||  |||||||||  ||||||  ||||||||    
T  13902 tacatgaaagtgaactcttgtgttttaaggattcttgat 13864  T

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Target: scaffold0278; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 17333 - 17198
Alignment:
Q  221 gttttgttttattgtaaaaggcatggttaagtagctaatttttattgaaaatatcatgacacaaaattttcattgtctcctcttatttgattgattcttg 320  Q
    ||||||||| ||||  ||||||||| ||||||||||  |||||||||||||| |  |||||  |||||||  ||||||||||| | ||  ||| ||||||    
T  17333 gttttgtttaattgcgaaaggcatgattaagtagcttgtttttattgaaaattt--tgaca-taaatttttgttgtctcctctaaattagttgtttcttg 17237  T
Q  321 tacatgaaagcaaactcttgtaatttaagtcttcttgat 359  Q
    ||||||||||  |||||||||  ||||||  ||||||||    
T  17236 tacatgaaagtgaactcttgtgttttaaggattcttgat 17198  T

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Target: scaffold0566 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 1874 - 1922
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| |||| ||||||||||    
T  1874 ttgttttgttttattgtaaaaggcatgaataaggagcttatttttattg 1922  T

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Target: scaffold0375 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 11792 - 11840
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    ||||||||||||||||||||||||||| ||||| ||||  |||||||||    
T  11792 ttgttttgttttattgtaaaaggcatgattaagcagcttgtttttattg 11840  T

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Target: scaffold0384 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 9841 - 9889
Alignment:
Q  219 ttgttttgttttattgtaaaaggcatggttaagtagctaatttttattg 267  Q
    |||||||||||||||||||||||||||  |||| ||||  |||||||||    
T  9841 ttgttttgttttattgtaaaaggcatgaataagcagcttgtttttattg 9889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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