View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8685_high_2 (Length: 506)

Name: NF8685_high_2
Description: NF8685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8685_high_2
NF8685_high_2
[»] chr8 (3 HSPs)
chr8 (7-441)||(33522051-33522485)
chr8 (460-498)||(33522522-33522560)
chr8 (386-418)||(27049312-27049344)
[»] chr4 (3 HSPs)
chr4 (7-375)||(55448325-55448692)
chr4 (386-414)||(44119260-44119288)
chr4 (386-414)||(49803155-49803183)
[»] chr7 (1 HSPs)
chr7 (386-414)||(3968293-3968321)
[»] chr6 (2 HSPs)
chr6 (386-414)||(2023727-2023755)
chr6 (386-414)||(9559639-9559667)
[»] chr5 (3 HSPs)
chr5 (259-311)||(7045007-7045059)
chr5 (27-91)||(7045221-7045285)
chr5 (386-418)||(18704129-18704161)
[»] chr1 (1 HSPs)
chr1 (386-414)||(4777383-4777411)


Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Original strand, 33522051 - 33522485
Alignment:
Q  7 gaaaatagcaccaccaaaagcatacattaagatgaagctgatcaaccatgtagagcatttcgacagcgagcttttgcattataaattgtcgcgcaatccc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522051 gaaaatagcaccaccaaaagcatacattaagatgaagctgatcaaccatgtagagcatttcgacagcgagcttttgcattataaattgtcgcgcaatccc 33522150  T
Q  107 caagtcttgtaccatttgcaatccttcttgataagttttatatgctataggttgaggaaacttatcaattgattgaacaagaagcatatcaacccatgaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522151 caagtcttgtaccatttgcaatccttcttgataagttttatatgctataggttgaggaaacttatcaattgattgaacaagaagcatatcaacccatgaa 33522250  T
Q  207 aaactccttgtttccggagaaaaaatgacgaaacatttgctttgttcatcaacatgagttggtttggctttcacaattgataatggccaatcagccattg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33522251 aaactccttgtttccggagaaaaaatgacgaaacatttgctttgttcatcaacatgagttggtttggctttcacaattgataatggccaatcagccattg 33522350  T
Q  307 cacatttgatgcctgcattccacttcccttcccactgcaaagacaaagacacacaaattaacatgcatcactttctttttataagttatttctatagcaa 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33522351 cacatttgatgcctgcattccacttcccttcccactgcaaagacaaagacacacaaattaacatgcatcactttctttttataagttatttctataacaa 33522450  T
Q  407 aagataaataaacataaagtaaacaactaaatttt 441  Q
    |||||||||||||||||||||||||||||||||||    
T  33522451 aagataaataaacataaagtaaacaactaaatttt 33522485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 460 - 498
Target Start/End: Original strand, 33522522 - 33522560
Alignment:
Q  460 ccttgaaccacacagccacaggttcatctacttcatctc 498  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33522522 ccttgaaccacacagccacaggttcatctacttcatctc 33522560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 27049312 - 27049344
Alignment:
Q  386 tataagttatttctatagcaaaagataaataaa 418  Q
    ||||| |||||||||||||||||||||||||||    
T  27049312 tataatttatttctatagcaaaagataaataaa 27049344  T

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Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 55448325 - 55448692
Alignment:
Q  7 gaaaatagcaccaccaaaagcatacattaagatgaagctgatcaaccatgtagagcatttcgacagcgagcttttgcattataaattgtcgcgcaatccc 106  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||  ||||||||||||||||| |||||||||||||||||||||||||| |||||       
T  55448325 gaaaatagcaccaccaaaaacatacattaagatgaaactgattaataatgtagagcatttcgacggcgagcttttgcattataaattgtcgtgcaattgt 55448424  T
Q  107 caagtcttgtaccatttgcaatccttcttgataagttttatatgctataggttgaggaaacttatcaattgattgaacaagaagcatatcaacccatgaa 206  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  55448425 caagtcttgtaccattttcaatccttcatgataagtttcatatgctattggttgaggaaactcatgaattgatttaacaagaagcatatcaacccatgaa 55448524  T
Q  207 aaactccttgtttccggagaaaaaatgacgaaacatttgctttgttcatcaacatgagttggtttggctttcacaattgataatggccaatcagccattg 306  Q
     |  |||||||||| || |||||||| || | | ||||| | || |||| | ||| ||||||||||||||| |   |||||||||||||||||||  |||    
T  55448525 tagttccttgtttctggcgaaaaaattacaatatatttgttctgctcattatcattagttggtttggcttttatggttgataatggccaatcagcacttg 55448624  T
Q  307 cacatttgatgcctgcattccacttcccttcccactgcaaagacaaagacacacaaattaacatgcatc 375  Q
    |||||||||| ||||||| ||| ||| ||| ||||||||||||||| || ||| |||||||||||||||    
T  55448625 cacatttgattcctgcatgccaattctctttccactgcaaagacaatgataca-aaattaacatgcatc 55448692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 44119288 - 44119260
Alignment:
Q  386 tataagttatttctatagcaaaagataaa 414  Q
    |||||||||||||||||||||||||||||    
T  44119288 tataagttatttctatagcaaaagataaa 44119260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 49803155 - 49803183
Alignment:
Q  386 tataagttatttctatagcaaaagataaa 414  Q
    |||||||||||||||||||||||||||||    
T  49803155 tataagttatttctatagcaaaagataaa 49803183  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 3968321 - 3968293
Alignment:
Q  386 tataagttatttctatagcaaaagataaa 414  Q
    |||||||||||||||||||||||||||||    
T  3968321 tataagttatttctatagcaaaagataaa 3968293  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 2023755 - 2023727
Alignment:
Q  386 tataagttatttctatagcaaaagataaa 414  Q
    |||||||||||||||||||||||||||||    
T  2023755 tataagttatttctatagcaaaagataaa 2023727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 9559667 - 9559639
Alignment:
Q  386 tataagttatttctatagcaaaagataaa 414  Q
    |||||||||||||||||||||||||||||    
T  9559667 tataagttatttctatagcaaaagataaa 9559639  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 7045059 - 7045007
Alignment:
Q  259 catgagttggtttggctttcacaattgataatggccaatcagccattgcacat 311  Q
    ||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||    
T  7045059 catgagttggttttgctctcaaagttgataatggccagtcagcccttgcacat 7045007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 7045285 - 7045221
Alignment:
Q  27 catacattaagatgaagctgatcaaccatgtagagcatttcgacagcgagcttttgcattataaa 91  Q
    |||||||||||||||| ||||||||| ||||  |||||  | ||| | |||||||||||||||||    
T  7045285 catacattaagatgaaactgatcaacgatgttcagcatgccaacaactagcttttgcattataaa 7045221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 418
Target Start/End: Complemental strand, 18704161 - 18704129
Alignment:
Q  386 tataagttatttctatagcaaaagataaataaa 418  Q
    ||||||||||||||||| |||||||||||||||    
T  18704161 tataagttatttctataacaaaagataaataaa 18704129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 414
Target Start/End: Complemental strand, 4777411 - 4777383
Alignment:
Q  386 tataagttatttctatagcaaaagataaa 414  Q
    |||||||||||||||||||||||||||||    
T  4777411 tataagttatttctatagcaaaagataaa 4777383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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