View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8685_high_5 (Length: 250)

Name: NF8685_high_5
Description: NF8685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8685_high_5
NF8685_high_5
[»] chr8 (12 HSPs)
chr8 (1-232)||(27820779-27821010)
chr8 (1-232)||(38069958-38070189)
chr8 (5-232)||(11254510-11254737)
chr8 (5-232)||(17493536-17493763)
chr8 (5-232)||(18575038-18575265)
chr8 (5-232)||(39906921-39907145)
chr8 (22-232)||(12738429-12738639)
chr8 (18-232)||(17336033-17336247)
chr8 (5-232)||(9753780-9754006)
chr8 (23-232)||(13243610-13243818)
chr8 (126-232)||(11147782-11147886)
chr8 (5-102)||(11146780-11146877)
[»] chr4 (22 HSPs)
chr4 (5-232)||(40071512-40071739)
chr4 (5-232)||(54438220-54438447)
chr4 (5-232)||(17493763-17493990)
chr4 (5-232)||(37064816-37065043)
chr4 (5-232)||(925199-925426)
chr4 (12-232)||(39788009-39788230)
chr4 (5-232)||(47199496-47199723)
chr4 (5-232)||(34408720-34408947)
chr4 (5-232)||(20789683-20789909)
chr4 (5-231)||(21240336-21240562)
chr4 (24-232)||(33800846-33801053)
chr4 (20-232)||(32218000-32218212)
chr4 (55-232)||(52101108-52101285)
chr4 (5-230)||(46870617-46870840)
chr4 (30-232)||(53509705-53509907)
chr4 (18-232)||(3172083-3172296)
chr4 (18-232)||(28910221-28910434)
chr4 (5-119)||(51744660-51744774)
chr4 (18-166)||(41555485-41555633)
chr4 (155-224)||(51744590-51744659)
chr4 (5-102)||(10441153-10441251)
chr4 (5-102)||(28690088-28690184)
[»] chr2 (20 HSPs)
chr2 (5-232)||(29193998-29194225)
chr2 (5-232)||(2110230-2110457)
chr2 (5-226)||(43370684-43370905)
chr2 (5-232)||(45080483-45080708)
chr2 (5-232)||(28585746-28585973)
chr2 (5-232)||(4828152-4828379)
chr2 (20-232)||(8381379-8381591)
chr2 (32-232)||(1779135-1779335)
chr2 (18-220)||(42846984-42847184)
chr2 (30-187)||(39646437-39646591)
chr2 (97-232)||(9370475-9370611)
chr2 (78-232)||(43377271-43377423)
chr2 (5-102)||(31922032-31922129)
chr2 (31-117)||(16964852-16964938)
chr2 (5-102)||(25898473-25898570)
chr2 (134-232)||(16970295-16970391)
chr2 (126-232)||(31921684-31921788)
chr2 (175-229)||(39646372-39646426)
chr2 (191-230)||(30422588-30422627)
chr2 (180-232)||(25898766-25898818)
[»] chr3 (14 HSPs)
chr3 (8-232)||(51545675-51545899)
chr3 (5-232)||(40496783-40497010)
chr3 (5-232)||(41346057-41346284)
chr3 (5-232)||(54014247-54014474)
chr3 (5-232)||(24709020-24709247)
chr3 (9-232)||(48169738-48169961)
chr3 (5-232)||(50676485-50676710)
chr3 (30-231)||(48737561-48737762)
chr3 (5-134)||(12568169-12568298)
chr3 (5-134)||(13544633-13544762)
chr3 (130-232)||(13542855-13542957)
chr3 (5-102)||(30459816-30459913)
chr3 (126-232)||(30462801-30462905)
chr3 (1-43)||(16338968-16339010)
[»] chr6 (13 HSPs)
chr6 (1-232)||(29182597-29182828)
chr6 (9-232)||(28541650-28541873)
chr6 (5-232)||(13041982-13042208)
chr6 (5-229)||(1241119-1241342)
chr6 (9-232)||(12350286-12350509)
chr6 (5-223)||(16435789-16436007)
chr6 (5-232)||(30736429-30736656)
chr6 (18-232)||(7271141-7271356)
chr6 (18-227)||(31013563-31013772)
chr6 (5-232)||(1870543-1870769)
chr6 (41-232)||(13210390-13210578)
chr6 (5-112)||(31833748-31833855)
chr6 (130-232)||(31833654-31833751)
[»] chr7 (16 HSPs)
chr7 (5-226)||(29737415-29737636)
chr7 (5-232)||(40232178-40232405)
chr7 (5-232)||(25943710-25943935)
chr7 (5-232)||(27596149-27596375)
chr7 (12-232)||(6392288-6392508)
chr7 (9-232)||(4040961-4041184)
chr7 (12-232)||(41427711-41427931)
chr7 (5-232)||(31689416-31689643)
chr7 (5-232)||(38276608-38276835)
chr7 (10-232)||(24300217-24300429)
chr7 (5-232)||(21442863-21443088)
chr7 (18-232)||(48838082-48838295)
chr7 (5-102)||(22337720-22337818)
chr7 (126-232)||(22338101-22338205)
chr7 (126-232)||(22619883-22619987)
chr7 (8-86)||(22619537-22619615)
[»] scaffold0519 (1 HSPs)
scaffold0519 (5-232)||(10656-10883)
[»] chr5 (9 HSPs)
chr5 (5-232)||(36982196-36982423)
chr5 (28-232)||(42897437-42897641)
chr5 (5-232)||(14044066-14044292)
chr5 (5-232)||(2970729-2970954)
chr5 (130-232)||(36767939-36768039)
chr5 (5-102)||(33403204-33403301)
chr5 (129-232)||(33404365-33404466)
chr5 (5-102)||(36768782-36768879)
chr5 (179-232)||(5712600-5712653)
[»] chr1 (13 HSPs)
chr1 (5-232)||(1929280-1929506)
chr1 (5-232)||(38321655-38321882)
chr1 (5-232)||(39150960-39151187)
chr1 (5-232)||(46862566-46862793)
chr1 (5-232)||(28036763-28036991)
chr1 (5-229)||(32045843-32046067)
chr1 (12-232)||(50777014-50777234)
chr1 (5-232)||(46370937-46371158)
chr1 (5-218)||(8229073-8229286)
chr1 (18-231)||(1207516-1207727)
chr1 (18-232)||(40562499-40562711)
chr1 (1-208)||(38817780-38817984)
chr1 (22-232)||(9129464-9129675)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-232)||(10080-10304)
[»] scaffold0047 (1 HSPs)
scaffold0047 (5-232)||(69763-69990)
[»] scaffold0532 (1 HSPs)
scaffold0532 (15-232)||(3834-4051)
[»] scaffold0318 (1 HSPs)
scaffold0318 (5-198)||(16367-16560)
[»] scaffold0016 (2 HSPs)
scaffold0016 (115-232)||(92232-92349)
scaffold0016 (9-41)||(92374-92406)
[»] scaffold1194 (1 HSPs)
scaffold1194 (20-232)||(1004-1205)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27820779 - 27821010
Alignment:
Q  1 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27820779 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttat 27820878  T
Q  101 aaatattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaat 200  Q
    ||||| |||||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27820879 aaatactttttgtggtccccatgttaaaatttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaact 27820978  T
Q  201 cagtaaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||||||| |||||    
T  27820979 cagtaaaagtatcactctctttcttttatctt 27821010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38070189 - 38069958
Alignment:
Q  1 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  38070189 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttacccattat 38070090  T
Q  101 aaatattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaat 200  Q
    ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  38070089 aaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaact 38069990  T
Q  201 cagtaaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||| |||||||||||||||    
T  38069989 cagtaaaagtatcactatctttctttcatctt 38069958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 11254510 - 11254737
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  11254510 gtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccctttataaat 11254609  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11254610 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 11254709  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  11254710 aaaagtatcactctctttctttcatctt 11254737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 17493536 - 17493763
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  17493536 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaaacaaaatttgacagatttaccccttataaat 17493635  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||    
T  17493636 actttttgtggtccccatgttaaagtttgtagtggaacaaataaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaacttagt 17493735  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  17493736 aaaagtatcactctctttctttcatctt 17493763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 18575038 - 18575265
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||  |||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  18575038 gtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatactcgaccttctcagatttctaagcaaaatttgacaaatttatctcttataaat 18575137  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18575138 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 18575237  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  18575238 aaaagtatcactctctttctttcatctt 18575265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 39906921 - 39907145
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39906921 gtccctgaataagtgatctatttataaaaa-tatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 39907019  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  39907020 actttttgtggtcc--atgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgataagggcaactcagt 39907117  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  39907118 aaaagtatcactctctttctttcatctt 39907145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 12738639 - 12738429
Alignment:
Q  22 ctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtcccta 121  Q
    ||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||| |    
T  12738639 ctatttggaaaaaatatttgtcccataatacttgaccttatcagatttctaagcagaatttgacaaatttaccccttataaatattttttgtgatcccca 12738540  T
Q  122 tgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctt 221  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||    
T  12738539 tgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctt 12738440  T
Q  222 tctttcatctt 232  Q
    ||||| |||||    
T  12738439 tcttttatctt 12738429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 17336247 - 17336033
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||  ||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||     
T  17336247 tgacctattttgaaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgtggtt 17336148  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactc 217  Q
    || |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| ||||| ||    
T  17336147 cccatgttaaagtttctagtggaacaacgaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacagttcagtaaaaatatcattc 17336048  T
Q  218 tctttctttcatctt 232  Q
    |||||||||||||||    
T  17336047 tctttctttcatctt 17336033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 9753780 - 9754006
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||  ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||| |||||||||    
T  9753780 gtccctcaatacttgacctatttaaaaaaaatatttgtcccataatacttgaccttctcaaatttctaagcagaatttgacaaatttacctcttataaat 9753879  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataa-tgacaagggcaaatcag 203  Q
    |||||||| |||| | |||| ||||||||||||| |||||||||| |||||||||||||||||||  || |||||||||||| | |||||| ||| ||||    
T  9753880 attttttgtggtctcaatgtaaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataattaacaaggacaattcag 9753977  T
Q  204 taaaagtatcactctctttctttcatctt 232  Q
    ||||| ||||| | |||||||||||||||    
T  9753978 taaaaatatcattatctttctttcatctt 9754006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 13243818 - 13243610
Alignment:
Q  23 tatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctat 122  Q
    |||||| ||||||||| |||| |||||||  ||||||||||| ||||||||||| ||||||||| ||| |||||||||||||| |||||| |||| | ||    
T  13243818 tatttggaaaaaatatatgtctcacaatatttgaccttctcaaatttctaagcagaatttgacaaattcaccccttataaatactttttgtggtctcaat 13243719  T
Q  123 gttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataa-tgacaagggcaaatcagtaaaagtatcactctctt 221  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||| | |||||| ||| ||||||||| ||||| | ||||    
T  13243718 gtaaaagtttgtagtggaacaaagaaaataatcattacttaaaaatg--aaggtttcaaaataattaacaaggacaattcagtaaaaatatcattatctt 13243621  T
Q  222 tctttcatctt 232  Q
    ||||| |||||    
T  13243620 tcttttatctt 13243610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 11147782 - 11147886
Alignment:
Q  126 aaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctt 225  Q
    |||||||||||||||||||  ||| |||| |||| |||||||||  || |||| |||||||| | |||||||| ||||||||| ||||| |||||| |||    
T  11147782 aaagtttgtagtggaacaattaaagtaattattatttaaaagtg--aaggtttaaaaataataataagggcaattcagtaaaaatatcattctcttcctt 11147879  T
Q  226 tcatctt 232  Q
    |||||||    
T  11147880 tcatctt 11147886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 11146780 - 11146877
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    |||| ||||||||||| |||||||||||||| | ||||  || ||||| ||||||| ||| ||||  || ||||||||||||  ||||| ||||||||    
T  11146780 gtccttgaataagtgatctatttgtaaaaaaaaattgtttcaaaatacttgaccttatcaaattttaaaacaaaatttgacaattttactccttataa 11146877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 40071739 - 40071512
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40071739 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 40071640  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  40071639 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattgcttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 40071540  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  40071539 aaaagtatcactctctttctttcatctt 40071512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 54438447 - 54438220
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54438447 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaat 54438348  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  54438347 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagt 54438248  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  54438247 aaaagtatcactctctttctttcatctt 54438220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 17493763 - 17493990
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  17493763 gtccctgaataagtgacctatttgtaaaaaatatttgtctcacaatacttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaaa 17493862  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  17493863 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataattattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaat 17493962  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  17493963 aaaagtatcactctctttctttcatctt 17493990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 37065043 - 37064816
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37065043 gtccctgaataagtgacttatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacatatttaccccttataaat 37064944  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  37064943 actttttgtggtcctcatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaaaaatgacaagggcaactcagt 37064844  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  37064843 aaaagtatcactctctttctttcatctt 37064816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 925426 - 925199
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925426 gtccctgaataagtgacctatttgtaaaaaatatttatcctacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 925327  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  925326 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 925227  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||| | ||||||| |||||    
T  925226 aaaagtatcactttatttcttttatctt 925199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 39788009 - 39788230
Alignment:
Q  12 aataagtgacctatttgtaaaa-aatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttt 110  Q
    |||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39788009 aataagtgacctatttgtaaaaaaatatttgttccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaatactttt 39788108  T
Q  111 tgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagt 210  Q
    || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39788109 tgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagt 39788208  T
Q  211 atcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||    
T  39788209 atcactctctttctttcatctt 39788230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 47199496 - 47199723
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  47199496 gtccgtgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttaacagatttaccccatataaat 47199595  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  47199596 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcaat 47199695  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||| |||||||||||||||||||||||    
T  47199696 aaaaatatcactctctttctttcatctt 47199723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 34408947 - 34408720
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  34408947 gtccctgaataagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaggtaaaatttgacagatttaccccttataaat 34408848  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  34408847 actttttgtggtccacatgttaaagtttgtagtataacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaat 34408748  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||| |||||||||||||||||    
T  34408747 aaaagtatcattctctttctttcatctt 34408720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 20789683 - 20789909
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  20789683 gtccctgaataaatgatctatttgtaaaaaatatttgtcccataatacttgatcttctcagatttctaagtaaaatttgacagatttatcccttataaat 20789782  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||    
T  20789783 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa-ggcagctcagt 20789881  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  20789882 aaaagtatcactctctttctttcatctt 20789909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 21240336 - 21240562
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  21240336 gtccctcaatacttgacctatttgaaaaaaatatttgtcccataatacttgaccttctcagacttctaagtagaatttgacagatttaccccatataaat 21240435  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| | ||| |||||    
T  21240436 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaatagtgacaatgtcaattcagt 21240535  T
Q  205 aaaagtatcactctctttctttcatct 231  Q
    |||| ||||| ||||||||||||||||    
T  21240536 aaaaatatcattctctttctttcatct 21240562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 33801053 - 33800846
Alignment:
Q  24 atttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatg 123  Q
    ||||||||||||||||||| | | ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| | |||||| ||     
T  33801053 atttgtaaaaaatatttgttctataatacttgaccttctcagatttctaagtaaaatttgacagatttacctcttataaatactttt-gtggtccccata 33800955  T
Q  124 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttc 223  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  33800954 ttaaagtttgtagtggaacaaagaaagtaatcattatttaaaagtgaaaaagtttcaaaatgatgacaagggcaactcagtaaaagtatcactctctttc 33800855  T
Q  224 tttcatctt 232  Q
    || ||||||    
T  33800854 ttccatctt 33800846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 32218212 - 32218000
Alignment:
Q  20 acctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccc 119  Q
    ||||||||| ||||||||||||||| | ||||| |||  ||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||| ||    
T  32218212 acctatttgaaaaaaatatttgtcctataatacttgattttctcagatttttaagcagaatttgacagatttaccccttataaatactttttgtggttcc 32218113  T
Q  120 tatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctc 219  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||| | ||||    
T  32218112 catgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggactattcagtaaaaatataattctc 32218013  T
Q  220 tttctttcatctt 232  Q
    |||||||||||||    
T  32218012 tttctttcatctt 32218000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 55 - 232
Target Start/End: Original strand, 52101108 - 52101285
Alignment:
Q  55 gaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataat 154  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||     
T  52101108 gaccttctcagatttataagcaaaatttgacagatttaccctttataaatactttttgtggttcccatgttaaagtttgtagtggaacaaagaaaataac 52101207  T
Q  155 cattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||| | | |||||||||||||    
T  52101208 cattacttaaaagtgaaaaaatttcaaaataatgacaagtgcaattcagtaaaaatatcattatatttctttcatctt 52101285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 46870617 - 46870840
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||  ||||||||||||||||||||||| |||||| ||||||||| |||| | ||||||||| ||||| |||||||||||    
T  46870617 gtccctcaatacttgacctatttagaaaaaatatttgtcccacaatacttgacctgctcagatttttaagtacaatttgacaaatttatcccttataaat 46870716  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||| |||||||||||||||||||||||| | |||||||||||||||||  || ||||||||||||| |||||| | | |||||    
T  46870717 actttttgtggtccccatgtaaaagtttgtagtggaacaaagaaagtcatcattacttaaaagtg--aaggtttcaaaataataacaaggactattcagt 46870814  T
Q  205 aaaagtatcactctctttctttcatc 230  Q
    |||| ||||| |||||||||||||||    
T  46870815 aaaaatatcattctctttctttcatc 46870840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 53509907 - 53509705
Alignment:
Q  30 aaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaaag 129  Q
    ||||||||||||| ||||||||  ||||||| ||||||||||||| | ||||||||| |||||  ||||||||||| |||||| | |||| ||||||||     
T  53509907 aaaaaatatttgttccacaatatttgaccttatcagatttctaaggagaatttgacatatttattccttataaatactttttgtgatccccatgttaaaa 53509808  T
Q  130 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcat 229  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||| | ||||| ||| ||||||||||    
T  53509807 tttgtagtggaacaaagaaaataatcattatttaaaagtgaaaaagtttcaaaataatgacaatgacaattcagtaacaatatcattctttttctttcat 53509708  T
Q  230 ctt 232  Q
    |||    
T  53509707 ctt 53509705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 3172296 - 3172083
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||| |||||||  ||||||||| |||||| ||||    
T  3172296 tgacctatttgaaaaaaatatttgtcccacaatacttgactttctcaaatttctaagcagaatttgacaaatttaccttttataaatactttttgtggtc 3172197  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataa-tgacaagggcaaatcagtaaaagtatcact 216  Q
     | |||| |||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||| | |||||| ||| ||||||||| ||||| |    
T  3172196 tcaatgtaaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataattaacaaggacaattcagtaaaaatatcatt 3172099  T
Q  217 ctctttctttcatctt 232  Q
     ||||| |||||||||    
T  3172098 atctttttttcatctt 3172083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 28910434 - 28910221
Alignment:
Q  18 tgacctatttgtaaaaaa-tatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggt 116  Q
    ||||||||||| |||||| ||||||| | ||| ||  | |||||||||||||| |||||| ||||||||| |||||||||||||||||| |||||| |||    
T  28910434 tgacctatttgaaaaaaaatatttgttctacagtatttaaccttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggt 28910335  T
Q  117 ccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcact 216  Q
      | |||| ||||||| |||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||| ||| ||||||||| ||||| |    
T  28910334 ttccatgtaaaagtttctagtggaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataataacaaggacaattcagtaaaaatatcatt 28910237  T
Q  217 ctctttctttcatctt 232  Q
    ||||||||||||||||    
T  28910236 ctctttctttcatctt 28910221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 51744774 - 51744660
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51744774 gtccctaaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaat 51744675  T
Q  105 attttttgcggtccc 119  Q
    | |||||| ||||||    
T  51744674 actttttgtggtccc 51744660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 41555485 - 41555633
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||| |||||| ||||||||| |||||  ||||||||||| |||| |||||  |||||||||  |||||||||||||  || |||||| ||||    
T  41555485 tgacctatttggaaaaaaaatttgtcccgcaataattgaccttctcaaatttttaagcttaatttgacaagtttaccccttatagttactttttgtggtc 41555584  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaa 166  Q
     |||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  41555585 tctatgtaaaagtttgtagtgaaacaaagaaagtaatcattacttaaaa 41555633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 51744659 - 51744590
Alignment:
Q  155 cattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttct 224  Q
    ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  51744659 cattacttaaaagtgaacaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttct 51744590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 10441153 - 10441251
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaata-tttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    ||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||||| ||||  |||||||||||||||  |||||| |||||||    
T  10441153 gtccctgaataagtgacctatttgtaaaaaaaaatttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacctcttataa 10441251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 28690184 - 28690088
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    |||||||||||| |||| ||||||||||||| ||| ||| || ||||  ||||||||||| ||||  |||||||||||||||  |||| |||||||||    
T  28690184 gtccctgaataactgacatatttgtaaaaaaaatt-gtcgcaaaatatttgaccttctcaaattttaaagcaaaatttgacaattttatcccttataa 28690088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 29193998 - 29194225
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29193998 gtccctgaataagtgacctatttgtaaaaaaaatgtgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 29194097  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29194098 actttttgtggtcccgatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 29194197  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  29194198 aaaagtatcactctctttctttcatctt 29194225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 2110230 - 2110457
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2110230 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccccttataaat 2110329  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2110330 actttttgtggtccccatgttaaagtttgtagtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 2110429  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  2110430 aaaagtatcactctctttctttcatctt 2110457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 43370684 - 43370905
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43370684 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaat 43370783  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43370784 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 43370883  T
Q  205 aaaagtatcactctctttcttt 226  Q
    ||||||||||||||||||||||    
T  43370884 aaaagtatcactctctttcttt 43370905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 45080708 - 45080483
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45080708 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 45080609  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  45080608 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaacataatgataagggcaactcagt 45080509  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||  ||||||||||||||||    
T  45080508 aaaagtatca--ctctttctttcatctt 45080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 28585973 - 28585746
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28585973 gtccctgaataagtgacctatttgtaaaaaatatttatcccacaatacttaaccttctcagatttctaagcaaaatttgacagatttaccctttataaat 28585874  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28585873 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 28585774  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||| |||||    
T  28585773 aaaagtatcactctctttcttttatctt 28585746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 4828379 - 4828152
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  4828379 gtccctcaataagtgacatatttgtaaaaaatatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttaccccttataaat 4828280  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4828279 actttttgtggtccccatgttaaagtttatagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 4828180  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||| ||||||| |||||    
T  4828179 aaaagtatcactctttttcttttatctt 4828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 8381591 - 8381379
Alignment:
Q  20 acctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccc 119  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||| |||||| ||||      
T  8381591 acctatttgtaaaaaatatttgtcccacgatacttgaccttctcaaatttctaaataaaatttgacagatttaccccttataaatactttttgtggtctt 8381492  T
Q  120 tatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctc 219  Q
     |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  8381491 catgttaaaatttgtagtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactcta 8381392  T
Q  220 tttctttcatctt 232  Q
    |||||||||||||    
T  8381391 tttctttcatctt 8381379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 1779335 - 1779135
Alignment:
Q  32 aaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaaagtt 131  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||| |||||| |||||||||||    
T  1779335 aaaatatttgtcccacaatgcctgatcttctcagatttctaagcagaatttaacagatttaccctttataaatactttttgtggtccccatgttaaagtt 1779236  T
Q  132 tgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatct 231  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||| | ||||||||||||||    
T  1779235 tgtagtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaattcagtaaaaatatcattatctttctttcatct 1779136  T
Q  232 t 232  Q
    |    
T  1779135 t 1779135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 42847184 - 42846984
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||| |||||||| |||||| ||||||||| |||||||||||||||||| |||||| | ||    
T  42847184 tgacctatttgaaaaaaatatttgtcccataatacttgaccttttcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtgttc 42847085  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactc 217  Q
     | |||| |||||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||||| |||||| ||| | ||||||| ||||| ||    
T  42847084 tccatgtaaaagtttgtaatggaacaaagaaaataatcattacttaaaagtgaaga--tttcaaaataataacaaggacaatttagtaaaaatatcattc 42846987  T
Q  218 tct 220  Q
    |||    
T  42846986 tct 42846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 39646591 - 39646437
Alignment:
Q  30 aaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaaag 129  Q
    ||||||||||||||||||||||  |||| |||||||||||||||  | ||||||||| |||||||||||||||||| |||||| |||||  |||| ||||    
T  39646591 aaaaaatatttgtcccacaatatttgacattctcagatttctaaatagaatttgacaaatttaccccttataaatactttttgtggtcctcatgtaaaag 39646492  T
Q  130 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 187  Q
    |||||||||||||||| ||| |||||||||||||||||||  || |||||||||||||    
T  39646491 tttgtagtggaacaaa-aaagtaatcattacttaaaagtg--aaggtttcaaaataat 39646437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 9370475 - 9370611
Alignment:
Q  97 ttataaatatttttt-gcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaggg 195  Q
    ||||||||||||||| | | |||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  9370475 ttataaatatttttttgtgatccccatattaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagga 9370574  T
Q  196 caaatcagtaaaagtatcactctctttctttcatctt 232  Q
    ||| |||||||||  |||| | ||||| |||||||||    
T  9370575 caattcagtaaaaaaatcattttctttttttcatctt 9370611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 78 - 232
Target Start/End: Complemental strand, 43377423 - 43377271
Alignment:
Q  78 aatttgacagatttaccccttataaatattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtt 177  Q
    ||||||||| ||||| | |||||||||| ||||||  ||| | | || |||||||||||||||||||||||| |||||||||||||||||||  || |||    
T  43377423 aatttgacaaatttatctcttataaatactttttgtagtctccaagtaaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggtt 43377326  T
Q  178 tcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatctt 232  Q
    |||||||||| |||||  ||| ||||||||||||||| | |||||||||||||||    
T  43377325 tcaaaataataacaagtacaattcagtaaaagtatcattttctttctttcatctt 43377271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 31922129 - 31922032
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    |||||| |||||||||| ||||||||||||| | |||||||| ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  31922129 gtccctaaataagtgacatatttgtaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 31922032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 16964852 - 16964938
Alignment:
Q  31 aaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||| ||| |||||||||||| ||||||||||| |||| |||| |||||||||||  ||||||||||||||||| |||||| ||||    
T  16964852 aaaaaaattcgtcccacaatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataaatactttttgtggtc 16964938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 25898473 - 25898570
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    ||||||||||||||||||||||||||||||| | || ||||| |||||  |||||||||| ||||  ||||||||||||| |  ||||| ||||||||    
T  25898473 gtccctgaataagtgacctatttgtaaaaaaaaattatcccaaaatactcgaccttctcaaattttaaagcaaaatttgataattttactccttataa 25898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 16970295 - 16970391
Alignment:
Q  134 tagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatctt 232  Q
    ||||| |||||||||| |||||||||||||||||||  || |||| |||||||| | |||||||| ||||||||| ||||| | ||||||||| |||||    
T  16970295 tagtgaaacaaagaaagtaatcattacttaaaagtg--aaggtttaaaaataataataagggcaattcagtaaaaatatcattatctttcttttatctt 16970391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 31921788 - 31921684
Alignment:
Q  126 aaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctt 225  Q
    |||| ||||||||||||||  ||| |||| |||| |||||||||||   |||| |||||||| | |||||||| | ||||||| ||||||||||||||||    
T  31921788 aaagcttgtagtggaacaattaaagtaattattatttaaaagtgaag--gtttaaaaataataataagggcaatttagtaaaaatatcactctctttctt 31921691  T
Q  226 tcatctt 232  Q
    |||||||    
T  31921690 tcatctt 31921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 39646426 - 39646372
Alignment:
Q  175 gtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcat 229  Q
    ||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||    
T  39646426 gtttcaaaataataacaagggcaattcagtaaaaatatcattctctttctttcat 39646372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 30422588 - 30422627
Alignment:
Q  191 aagggcaaatcagtaaaagtatcactctctttctttcatc 230  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  30422588 aagggcaactcagtaaaagtatcactctctttctttcatc 30422627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 25898766 - 25898818
Alignment:
Q  180 aaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatctt 232  Q
    |||||||| | |||||||| ||||||||| ||||||| | |||||||||||||    
T  25898766 aaaataataataagggcaattcagtaaaaatatcactttttttctttcatctt 25898818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 51545675 - 51545899
Alignment:
Q  8 cctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51545675 cctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatact 51545774  T
Q  108 ttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaa 207  Q
    ||||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51545775 ttttgtggtccccatgttaaagtttgtagtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaa 51545874  T
Q  208 agtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||||||    
T  51545875 agtatcactctctttctttcatctt 51545899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 40496783 - 40497010
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40496783 gtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaaacaaaatttgacagatttaccccttataaat 40496882  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40496883 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 40496982  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  40496983 aaaagtatcactctctttctttcatctt 40497010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 41346057 - 41346284
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41346057 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 41346156  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  41346157 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagt 41346256  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||  ||||||||||||||    
T  41346257 aaaagtatcacttactttctttcatctt 41346284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 54014247 - 54014474
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014247 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 54014346  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||    
T  54014347 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaattattacttaaaagtgaaaaagtttcaaaataatgataagggcaactcagt 54014446  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||| |||||    
T  54014447 aaaagtatcactctctttcttttatctt 54014474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 24709020 - 24709247
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||||||||    
T  24709020 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttataagcaaaatttgacagatttatcctttataaat 24709119  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  24709120 actttttgtggtcctcatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgacaagggcaactcagt 24709219  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  24709220 aaaagtatcactctctttctttcatctt 24709247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 48169738 - 48169961
Alignment:
Q  9 ctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattt 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  48169738 ctgaataagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaatactt 48169837  T
Q  109 tttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaa 208  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |    
T  48169838 tttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcagctcagtaata 48169937  T
Q  209 gtatcactctctttctttcatctt 232  Q
    |||||||||||||||||| |||||    
T  48169938 gtatcactctctttcttttatctt 48169961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 50676485 - 50676710
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50676485 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaat 50676584  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  50676585 actttttgtggtccc-atgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaa-ggcaactcagt 50676682  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||| ||||||||||||||||| |||||    
T  50676683 aaaaatatcactctctttcttttatctt 50676710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 48737561 - 48737762
Alignment:
Q  30 aaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaaag 129  Q
    ||||||||||||||  | ||||| ||| ||| |||||||| |||||| ||||||||| |||||||| ||||||||| |||||| |||||| |||||||||    
T  48737561 aaaaaatatttgtcttataatacttgatcttttcagatttttaagcagaatttgacaaatttaccctttataaatactttttgtggtccccatgttaaag 48737660  T
Q  130 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||    
T  48737661 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattttctttctttcat 48737760  T
Q  230 ct 231  Q
    ||    
T  48737761 ct 48737762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 12568298 - 12568169
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12568298 gtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaat 12568199  T
Q  105 attttttgcggtccctatgttaaagtttgt 134  Q
    | |||||| |||||| ||||||||||||||    
T  12568198 actttttgtggtccccatgttaaagtttgt 12568169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 13544762 - 13544633
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13544762 gtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttaccccttataaat 13544663  T
Q  105 attttttgcggtccctatgttaaagtttgt 134  Q
    | |||||| |||||| ||||||||||||||    
T  13544662 actttttgtggtccccatgttaaagtttgt 13544633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 13542957 - 13542855
Alignment:
Q  130 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcat 229  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13542957 tttgtagcgaaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcaatctctttctttcat 13542858  T
Q  230 ctt 232  Q
    |||    
T  13542857 ctt 13542855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 30459816 - 30459913
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    ||||||||||||||||||||||||||||||| | |||||||  ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  30459816 gtccctgaataagtgacctatttgtaaaaaaaaattgtccctaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 30459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 30462801 - 30462905
Alignment:
Q  126 aaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctt 225  Q
    |||||||||||||||||||  ||| |||| |||| |||||||||||   |||| |||||||| | |||||||| ||||||||| ||||||||| ||||||    
T  30462801 aaagtttgtagtggaacaattaaagtaattattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctatttctt 30462898  T
Q  226 tcatctt 232  Q
    |||||||    
T  30462899 tcatctt 30462905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16338968 - 16339010
Alignment:
Q  1 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtc 43  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  16338968 ctctgtccctaaataagtgacatatttgtaaaaaatatttgtc 16339010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29182597 - 29182828
Alignment:
Q  1 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  29182597 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcctacaatacttgaccttctcagatttctaggcaaaatttgacagatttacctcttat 29182696  T
Q  101 aaatattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaat 200  Q
    |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29182697 aaatacattttgtggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaact 29182796  T
Q  201 cagtaaaagtatcactctctttctttcatctt 232  Q
    |||||||| |||||||||||||||||||||||    
T  29182797 cagtaaaaatatcactctctttctttcatctt 29182828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 28541873 - 28541650
Alignment:
Q  9 ctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattt 108  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  28541873 ctgaataagtgacttatttgtaaaaaatatttatcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccccttataaatactt 28541774  T
Q  109 tttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaa 208  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  28541773 tttgtggtccccatgttaaagtttgtagtggaacaaaaaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaa 28541674  T
Q  209 gtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||    
T  28541673 gtatcactctctttctttcatctt 28541650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 13041982 - 13042208
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13041982 gtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttaccccttataaat 13042081  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||| |||||    
T  13042082 actttttgtggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtg-aaaattttttaaataatgacaagggcaactcagt 13042180  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||| |||||||||||||||||||||||    
T  13042181 aaaaatatcactctctttctttcatctt 13042208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 1241119 - 1241342
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  1241119 gtccctgaataagtgatctatttgtaaaaaatatttgtcccacaatacttgaacttctcagatttctaagcaaaatttgacagatttacctcttataaat 1241218  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| || |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  1241219 actttttgtggtccccatattaaagtttgcagtggaacaaagaaagtaatcattacttaaaa-tgaaaaagtttcaaaataatgacaagggcaactcagt 1241317  T
Q  205 aaaagtatcactctctttctttcat 229  Q
    |||||||||||| ||||||||||||    
T  1241318 aaaagtatcactttctttctttcat 1241342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 12350286 - 12350509
Alignment:
Q  9 ctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattt 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  12350286 ctgaataagtgacctatttgtaaaaagtatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacagatttaccccttatatatactt 12350385  T
Q  109 tttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaa 208  Q
    |||| |||||  |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12350386 tttgtggtcctcatgttaaagtttgtagtaaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaa 12350485  T
Q  209 gtatcactctctttctttcatctt 232  Q
    | ||||||||||||||||||||||    
T  12350486 gcatcactctctttctttcatctt 12350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 16435789 - 16436007
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  16435789 gtccctaaataaatgacttatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaaggaaaatttgacagatttaccccatataaat 16435888  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| ||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16435889 actttttgtggttctcatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 16435988  T
Q  205 aaaagtatcactctctttc 223  Q
    |||||||||||| ||||||    
T  16435989 aaaagtatcactttctttc 16436007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 30736429 - 30736656
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30736429 gtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaat 30736528  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | ||||||   |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  30736529 actttttgtaatccccatgttaaagtttgtagaggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagt 30736628  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||| ||||| |||||||||||||||||    
T  30736629 aaaaatatcattctctttctttcatctt 30736656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 7271356 - 7271141
Alignment:
Q  18 tgacctatttgtaaaaaa-tatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggt 116  Q
    ||||||||||| |||||| ||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||  ||    
T  7271356 tgacctatttgaaaaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgttgt 7271257  T
Q  117 ccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcact 216  Q
    ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |    
T  7271256 ccccatgttaaagtttgtagtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcatt 7271157  T
Q  217 ctctttctttcatctt 232  Q
    || |||||||||||||    
T  7271156 ctatttctttcatctt 7271141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 31013772 - 31013563
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| || |    
T  31013772 tgacctatttgaaaaaaatatttgttccacaatacttgatcttctcagatttctaagcagaatttgacggatttatcccttataaatattttttgtggcc 31013673  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactc 217  Q
    || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |     
T  31013672 cccatattaaagtttgtagtagaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgataagggcaattcagtaaaaatatcatta 31013573  T
Q  218 tctttctttc 227  Q
    ||||||||||    
T  31013572 tctttctttc 31013563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 1870543 - 1870769
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaa-aatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaa 103  Q
    |||||| ||||  ||||||||||| |||| ||||||||| | ||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  1870543 gtcccttaatacttgacctatttggaaaaaaatatttgttcaacaatacttgaccttctcagatttttaagcagaatttgacaaatttaccccttataaa 1870642  T
Q  104 tattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcag 203  Q
    || |||||| | || | |||| |||||||||||||||||||||||| |||||||||||||||||||  || | ||||||||||| |||||||||| | ||    
T  1870643 tactttttgtgatctccatgtaaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggcttcaaaataataacaagggcaatttag 1870740  T
Q  204 taaaagtatcactctctttctttcatctt 232  Q
    ||||| ||||| || ||||||||||||||    
T  1870741 taaaaatatcattccctttctttcatctt 1870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 13210390 - 13210578
Alignment:
Q  41 gtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaaagtttgtagtgga 140  Q
    ||||| |||||| ||||||||||| |||| |||||| ||||||||| |||||||| |||||||||||||||| |||| | |||| |||||||||||||||    
T  13210390 gtccctcaatacttgaccttctcaaatttttaagcagaatttgacaaatttacccattataaatattttttgtggtctccatgtaaaagtttgtagtgga 13210489  T
Q  141 acaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatctt 232  Q
    ||||||||| ||||  |||||||||||||  ||||||||||||| || |||||||| | |||||||||  |||| |||||||||||||||||    
T  13210490 acaaagaaagtaattcttacttaaaagtg--aaagtttcaaaat-ataacaagggcgattcagtaaaataatcattctctttctttcatctt 13210578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 31833855 - 31833748
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||| ||||||| |||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||| ||||| |||||| ||||    
T  31833855 gtccctcaatacttgatctatttgaaaaaaatatttgtcccacgatacttgaccttctcagatttttaagcataatttgacaaatttatcccttaaaaat 31833756  T
Q  105 attttttg 112  Q
    | ||||||    
T  31833755 actttttg 31833748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 31833751 - 31833654
Alignment:
Q  130 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcat 229  Q
    ||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||   |||||||| | ||||||| ||||| | | ||||||||||    
T  31833751 tttgtagtggaacaaagaaaataatcattacttaaaaatg--aaggtttcaaaataat---aagggcaatttagtaaaaatatcattatttttctttcat 31833657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 29737415 - 29737636
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29737415 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaat 29737514  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29737515 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 29737614  T
Q  205 aaaagtatcactctctttcttt 226  Q
    ||||||||||||||||||||||    
T  29737615 aaaagtatcactctctttcttt 29737636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 40232405 - 40232178
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40232405 gtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccccttataaat 40232306  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40232305 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 40232206  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||| |||||    
T  40232205 aaaagtatcactctctttcttttatctt 40232178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 25943935 - 25943710
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25943935 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 25943836  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | ||| ||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  25943835 actttatg--gtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaatggcaattcagt 25943738  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  25943737 aaaagtatcactctctttctttcatctt 25943710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 27596375 - 27596149
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  27596375 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttaccctttataaat 27596276  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  27596275 actttttgtggtccc-atgttaaagtttgtagtgaaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagt 27596177  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  27596176 aaaagtatcactctctttctttcatctt 27596149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 6392288 - 6392508
Alignment:
Q  12 aataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatatttttt 111  Q
    ||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6392288 aataagtgatctatttgtaaaaaatatttgtcccacaatactttaccttctcagatttctaagcaaaatttgacagatttaccccttataaatacttttt 6392387  T
Q  112 gcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagta 211  Q
    | |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  6392388 gtggtccccatgttaaagtttgtagtggaacaaagaaattaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagtaaaagta 6392487  T
Q  212 tcactctctttctttcatctt 232  Q
    |||||||||||||||||||||    
T  6392488 tcactctctttctttcatctt 6392508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 4040961 - 4041184
Alignment:
Q  9 ctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  4040961 ctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacggatttaccccttataaatactt 4041060  T
Q  109 tttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaa 208  Q
     ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  4041061 gttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaa 4041160  T
Q  209 gtatcactctctttctttcatctt 232  Q
    ||||||||| ||||||||||||||    
T  4041161 gtatcactccctttctttcatctt 4041184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 41427931 - 41427711
Alignment:
Q  12 aataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatatttttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41427931 aataagtgacctatttgtaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttaccccttataaatacttttt 41427832  T
Q  112 gcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagta 211  Q
    | |||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  41427831 gtggtccccatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcaataaaagta 41427732  T
Q  212 tcactctctttctttcatctt 232  Q
    | |||||||||||||||||||    
T  41427731 ttactctctttctttcatctt 41427711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 31689643 - 31689416
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31689643 gtccctgaataagtgacctatttgtaaaaaatatctgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttatatat 31689544  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  |||||||||||| ||||| |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  31689543 actttttgtggtcctcatgttaaagtttatagtgaaacaaagaaagtaatcattttttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 31689444  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  31689443 aaaagtatcactctctttctttcatctt 31689416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 38276835 - 38276608
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  38276835 gtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgaccttttcatatttctaagcagaatttgacagatttaccccttataaat 38276736  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38276735 actttttgtggtcctcatattaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagt 38276636  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||  |||| |||||||||||||||||    
T  38276635 aaaaacatcattctctttctttcatctt 38276608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 24300429 - 24300217
Alignment:
Q  10 tgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatatttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||    
T  24300429 tgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttatcaaatttctaagcaaaatttgacagatttaccccttataaatacttt 24300330  T
Q  110 ttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaag 209  Q
    ||| |||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||          |||||||||| ||||||||||    
T  24300329 ttgtggtccccatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagttt----------acaagggcaactcagtaaaag 24300240  T
Q  210 tatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||||    
T  24300239 tatcactctctttctttcatctt 24300217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 21443088 - 21442863
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||| ||||| |||||||||||    
T  21443088 gtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgaccttctcagatttttaagtagaatttgacaaatttatcccttataaat 21442989  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||| | |||| |||||||| ||||||| ||||||| ||| |||||||||||||||  |||||||||||||||| |||||||||| | |||    
T  21442988 actttttgtggtctccatgtaaaagtttgcagtggaataaagaaagtaaccattacttaaaagtg--aaagtttcaaaataataacaagggcaatttagt 21442891  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||| ||||| ||| ||| |||||||||    
T  21442890 aaaaatatcattctatttttttcatctt 21442863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 48838082 - 48838295
Alignment:
Q  18 tgacctatttgtaaaa-aatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggt 116  Q
    ||||||||||| |||| ||||||||||||||||||| |||| ||||||||||| |||||| ||||||||| |||||||||||||||||| |||||| |||    
T  48838082 tgacctatttgaaaaaaaatatttgtcccacaatacttgactttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggt 48838181  T
Q  117 ccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcact 216  Q
    | | |||| ||||| |||||||||||||||||| |||||||||||||||||||  ||||||| |||||||| |||||| ||| | ||||||| ||||| |    
T  48838182 ctccatgtaaaagtgtgtagtggaacaaagaaagtaatcattacttaaaagtg--aaagttttaaaataataacaaggacaatttagtaaaaatatcatt 48838279  T
Q  217 ctctttctttcatctt 232  Q
     ||||||||| |||||    
T  48838280 ttctttcttttatctt 48838295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 22337720 - 22337818
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatat-ttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    ||||||||||||||||||||||||||||||| |  |||||||| ||||| ||||||||||| ||||  |||||||| ||||||  ||||||||||||||    
T  22337720 gtccctgaataagtgacctatttgtaaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaaattgacaattttaccccttataa 22337818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 22338101 - 22338205
Alignment:
Q  126 aaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctt 225  Q
    |||||||||||||||| |   ||| |||| |||| |||||||||||   |||| |||||||| | |||||||| ||||||||| ||||||||||||||||    
T  22338101 aaagtttgtagtggaatatttaaagtaattattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctctttctt 22338198  T
Q  226 tcatctt 232  Q
    |||||||    
T  22338199 tcatctt 22338205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 22619883 - 22619987
Alignment:
Q  126 aaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctt 225  Q
    |||||||||||||||||||  ||| |||| |||| |||||||||||   |||| |||||||| | || ||||| ||| ||||| ||||||||||||||||    
T  22619883 aaagtttgtagtggaacaattaaagtaattattatttaaaagtgaag--gtttaaaaataataataaaggcaattcaataaaaatatcactctctttctt 22619980  T
Q  226 tcatctt 232  Q
    |||||||    
T  22619981 tcatctt 22619987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 22619537 - 22619615
Alignment:
Q  8 cctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgaca 86  Q
    |||||||||||||||||||||||||| | | ||||  || ||||| ||| ||||||| ||||  |||||||||||||||    
T  22619537 cctgaataagtgacctatttgtaaaataaaattgtttcaaaatacttgatcttctcaaattttaaagcaaaatttgaca 22619615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 10883 - 10656
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  10883 gtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttaccctttataaat 10784  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10783 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 10684  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  10683 aaaagtatcactctctttctttcatctt 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 36982196 - 36982423
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  36982196 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaggcaaaatttgacagatttaccccttataaat 36982295  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36982296 actttttgtggtccccatgttaaagtttgtagtggaacaaataaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 36982395  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||| |||||||||||||    
T  36982396 aaaagtatcactctttttctttcatctt 36982423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 42897641 - 42897437
Alignment:
Q  28 gtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccctatgttaa 127  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||    
T  42897641 gtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaa 42897542  T
Q  128 agtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttc 227  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42897541 agtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttctttc 42897442  T
Q  228 atctt 232  Q
    |||||    
T  42897441 atctt 42897437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 14044066 - 14044292
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14044066 gtccctgaataagtgacctatttgtaaaaaatatttgtcccataatatttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaat 14044165  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||    
T  14044166 actttttgtggtccccatgttaaagtttgtagtggaacaaataaagtaatcattatttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagt 14044265  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
     |||||||||||||||||||||||||||    
T  14044266 -aaagtatcactctctttctttcatctt 14044292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 2970954 - 2970729
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  2970954 gtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgacattctcaaatttctaagcagaatttgacaaatttaccccgtataaat 2970855  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataa-tgacaagggcaaatcag 203  Q
    | |||||| |||| | ||| ||||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||| | |||||||||| ||||    
T  2970854 actttttgtggtctcaatg-taaagtttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataattaacaagggcaattcag 2970758  T
Q  204 taaaagtatcactctctttctttcatctt 232  Q
    | ||| ||||| | |||||||||||||||    
T  2970757 tgaaaatatcattatctttctttcatctt 2970729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 36768039 - 36767939
Alignment:
Q  130 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcat 229  Q
    |||||||||||||||||||| ||||||||| |||||||||||   |||| |||||||| | |||||||| ||||||||| ||||||||||||||||||||    
T  36768039 tttgtagtggaacaaagaaagtaatcattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctctttctttcat 36767942  T
Q  230 ctt 232  Q
    |||    
T  36767941 ctt 36767939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 33403204 - 33403301
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    |||||||||||||||| |||||||||||||| | |||||| | ||||| ||||||||||| ||||  |||||||||||||||  ||||||||||||||    
T  33403204 gtccctgaataagtgatctatttgtaaaaaaaaattgtcctaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttaccccttataa 33403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 33404365 - 33404466
Alignment:
Q  129 gtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctctttctttca 228  Q
    ||||||||||||||||  ||| |||| |||| ||||||||  ||| |||| |||||||| | |||||||| ||||||||| |||||||||||||||||||    
T  33404365 gtttgtagtggaacaattaaagtaattattatttaaaagt--aaaggtttaaaaataataataagggcaattcagtaaaaatatcactctctttctttca 33404462  T
Q  229 tctt 232  Q
    ||||    
T  33404463 tctt 33404466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 36768879 - 36768782
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataa 102  Q
    ||||||||||||||||||||||| |  |||| | |||||||| |||||  |||||| ||| ||||  |||||||||||||||  ||||||||||||||    
T  36768879 gtccctgaataagtgacctatttttttaaaaaaattgtcccaaaatactcgaccttatcaaattttaaagcaaaatttgacaattttaccccttataa 36768782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 5712600 - 5712653
Alignment:
Q  179 caaaataatgacaagggcaaatcagtaaaagtatcactctctttctttcatctt 232  Q
    ||||||||| | |||||||| |||| |||| ||||||| |||||||||||||||    
T  5712600 caaaataataataagggcaattcagaaaaaatatcactttctttctttcatctt 5712653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 1929506 - 1929280
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1929506 gtccctaaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttaccccttataaat 1929407  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1929406 attttttgtggtccccatgttaaagtttgtagtggaacaaa-aaaaaaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 1929308  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||| |||||||||||||    
T  1929307 aaaagtatcactctttttctttcatctt 1929280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 38321655 - 38321882
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  38321655 gtccctgaataactgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttaaaagatttaacccttataaat 38321754  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38321755 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 38321854  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  38321855 aaaagtatcactctctttctttcatctt 38321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 39151187 - 39150960
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39151187 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttaccccttataaat 39151088  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39151087 actttttgtggtcctcatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 39150988  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||| ||||||||||| |||||    
T  39150987 aaaagtatcattctctttcttttatctt 39150960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 46862566 - 46862793
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  46862566 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttttaagcaaaatttgacagatttaccccttataaat 46862665  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  46862666 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagg 46862765  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||||||||||||||||||||| |||||    
T  46862766 aaaagtatcactctctttcttttatctt 46862793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 28036991 - 28036763
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28036991 gtcccttaataaatgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttatcccttataaat 28036892  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28036891 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagt 28036792  T
Q  205 -aaaagtatcactctctttctttcatctt 232  Q
     |||| ||||||||||||||||| |||||    
T  28036791 aaaaaatatcactctctttcttttatctt 28036763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 32045843 - 32046067
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32045843 gtccctgaataagtgatctatttgtaaaaaatatttgttccacaatacttgaccttctcagatttctaagcaaaatttgaaagatttaccccttataaat 32045942  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||    
T  32045943 actttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataacgacaagggcaactcggt 32046042  T
Q  205 aaaagtatcactctctttctttcat 229  Q
    |||||||||||| ||||||||||||    
T  32046043 aaaagtatcactttctttctttcat 32046067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 50777014 - 50777234
Alignment:
Q  12 aataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatatttttt 111  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  50777014 aataagtgacttatttgtaaaaaatatttgtcccataatacttgaccttcttaaatttctaagcaaaatttgacagatttaccccttataaatacttttt 50777113  T
Q  112 gcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagta 211  Q
    | |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50777114 ggggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagta 50777213  T
Q  212 tcactctctttctttcatctt 232  Q
    ||||||||||||||| |||||    
T  50777214 tcactctctttcttttatctt 50777234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 46370937 - 46371158
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46370937 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacaaatttaccccttataaat 46371036  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| || |||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||||||| |||||    
T  46371037 actttttgtggtccc-atattaaagtttgtagtggaacaaagaaagtaatcattactt-----tgaaaaagtttcaaaataatgacaagggcaattcagt 46371130  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    ||||||||||||||||||||||||||||    
T  46371131 aaaagtatcactctctttctttcatctt 46371158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 8229073 - 8229286
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||| | ||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  8229073 gtccctgaataagtgacctatttataaaaaatatttgttcctcaatacttaaccttcttagatttttaagcaaaatttgacaaatttaccccttataaat 8229172  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| |||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  8229173 actttttgtggtccccatgttaaagtttgtagtgaaataaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagt 8229272  T
Q  205 aaaagtatcactct 218  Q
    |||| |||||||||    
T  8229273 aaaaatatcactct 8229286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 1207727 - 1207516
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||| ||||||||||||||  | ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| | |  |    
T  1207727 tgacctatttgaaaaaaatatttgtcttataatacttgaccttctcagatttctaagcagaatttgacagatttaccc-ttataaatacttttgg-gtcc 1207630  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactc 217  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |     
T  1207629 cctatgttaaagtttgtagaggaacaaggaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcatta 1207530  T
Q  218 tctttctttcatct 231  Q
    ||||||||||||||    
T  1207529 tctttctttcatct 1207516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 40562711 - 40562499
Alignment:
Q  18 tgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtc 117  Q
    ||||||||||| ||||||||||||||||||||||| |||| |||||| |||| |||||| ||||||| | |||||||||||||||||| | |||| ||||    
T  40562711 tgacctatttgaaaaaaatatttgtcccacaatacttgacattctcatatttttaagcagaatttgataaatttaccccttataaatactctttgtggtc 40562612  T
Q  118 cctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactc 217  Q
     | |||| |||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||| ||||| ||    
T  40562611 tccatgtaaaagtttgtagtagaacaaagaaagtaatcattacttaaaagt--aaaagtttcaaaataataacaagggcaattcagtaaaaatatcattc 40562514  T
Q  218 tctttctttcatctt 232  Q
    |||||||||||||||    
T  40562513 tctttctttcatctt 40562499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 38817780 - 38817984
Alignment:
Q  1 ctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttat 100  Q
    |||||||||| ||||  ||| ||||||| ||||||||||||||||| ||||  |||| |||||| ||||||||||||||||||| | |||||||||||||    
T  38817780 ctctgtccctcaatacttgatctatttgaaaaaaatatttgtcccataatatttgactttctcaaatttctaagcaaaatttgataaatttaccccttat 38817879  T
Q  101 aaatattttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaat 200  Q
    ||||| |||||| |||||| |||| ||||||||||||| |||||||||| |||| ||||||||||| ||  || ||||||||||||| |||||| ||| |    
T  38817880 aaatactttttgtggtccccatgtaaaagtttgtagtgaaacaaagaaagtaataattacttaaaa-tg--aaggtttcaaaataataacaaggacaatt 38817976  T
Q  201 cagtaaaa 208  Q
    || |||||    
T  38817977 caataaaa 38817984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 9129675 - 9129464
Alignment:
Q  22 ctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtcccta 121  Q
    ||||||| ||||||||||| || || ||||  | |||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||| |||| | |    
T  9129675 ctatttgaaaaaaatatttatctcataatattttaccttctcagatttttaagcagaatttgataaatttaccccttataaatattttttgtggtctcca 9129576  T
Q  122 tgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaa---agtatcactct 218  Q
    ||| ||| |||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||| |||||| ||| | ||||||   | ||||| |||    
T  9129575 tgtaaaattttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaagtttaaaaataataacaaggacaattgagtaaaaatattatcattct 9129478  T
Q  219 ctttctttcatctt 232  Q
    |||||||| |||||    
T  9129477 ctttcttttatctt 9129464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 10304 - 10080
Alignment:
Q  8 cctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatatt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||| |    
T  10304 cctgaataagtgatctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttatcccttataaatact 10205  T
Q  108 ttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaa 207  Q
    ||||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  10204 ttttgtggtccccatgttaaagtttatagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataataacaagggcaactcagtaaa 10105  T
Q  208 agtatcactctctttctttcatctt 232  Q
    | ||||||||||||||||| |||||    
T  10104 aatatcactctctttcttttatctt 10080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 69763 - 69990
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  69763 gtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccgcttataaat 69862  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagt 204  Q
    | |||||| | ||||  | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  69863 actttttgtgatccccgtattaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagt 69962  T
Q  205 aaaagtatcactctctttctttcatctt 232  Q
    |||| |||||||||||||||||||||||    
T  69963 aaaattatcactctctttctttcatctt 69990  T

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Target: scaffold0532 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 3834 - 4051
Alignment:
Q  15 aagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcg 114  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  3834 aagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgcg 3933  T
Q  115 gtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatca 214  Q
    ||||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |     
T  3934 gtcctcatgttaaagtttgtaatggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggtaactcagtaaaagtagcg 4033  T
Q  215 ctctctttctttcatctt 232  Q
    |||| ||| |||||||||    
T  4034 ctctttttttttcatctt 4051  T

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Target: scaffold0318 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 16367 - 16560
Alignment:
Q  5 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  16367 gtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttaccctttataaat 16466  T
Q  105 attttttgcggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaa 198  Q
    | |||||| |||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  16467 actttttgtggtccccatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaaggcaa 16560  T

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Target: scaffold0016 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 92349 - 92232
Alignment:
Q  115 gtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatca 214  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  92349 gtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtgtca 92250  T
Q  215 ctctctttctttcatctt 232  Q
    ||||||||||||||||||    
T  92249 ctctctttctttcatctt 92232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 92406 - 92374
Alignment:
Q  9 ctgaataagtgacctatttgtaaaaaatatttg 41  Q
    |||||||||||| ||||||||||||||||||||    
T  92406 ctgaataagtgatctatttgtaaaaaatatttg 92374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 1004 - 1205
Alignment:
Q  20 acctatttgtaaaaaatatttgtcccacaatacatgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatattttttgcggtccc 119  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||  |||||||| |||||||||||||||||| |||||| |||| |    
T  1004 acctatttggaaaaaatatttgtcccacaatacttgagcttctcagatttttaagcaggatttgacaaatttaccccttataaatactttttgtggtctc 1103  T
Q  120 tatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaaatcagtaaaagtatcactctc 219  Q
     |||| |||||||||||||||||         ||||||||||||||||||  || ||||||||||||| ||||| |||| ||||||||| ||||| ||||    
T  1104 catgtaaaagtttgtagtggaac---------aatcattacttaaaagtg--aaggtttcaaaataataacaagagcaattcagtaaaaatatcattctc 1192  T
Q  220 tttctttcatctt 232  Q
    |||||||||||||    
T  1193 tttctttcatctt 1205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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