View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8685_low_11 (Length: 227)

Name: NF8685_low_11
Description: NF8685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8685_low_11
NF8685_low_11
[»] chr1 (2 HSPs)
chr1 (1-143)||(43352795-43352937)
chr1 (106-209)||(43352193-43352295)
[»] chr7 (1 HSPs)
chr7 (64-212)||(30422682-30422828)
[»] chr2 (1 HSPs)
chr2 (4-63)||(2860614-2860673)
[»] chr8 (4 HSPs)
chr8 (87-212)||(39908503-39908625)
chr8 (1-63)||(36040369-36040431)
chr8 (124-207)||(2297142-2297224)
chr8 (64-104)||(4375038-4375078)
[»] chr4 (1 HSPs)
chr4 (148-207)||(31807257-31807316)
[»] chr5 (1 HSPs)
chr5 (148-207)||(14947389-14947449)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-62)||(49746-49807)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 43352937 - 43352795
Alignment:
Q  1 acttaaatatcaaagaaaataaaacaacacttatctaaagaaaaattacatgaaatagttttaggtggtatttcatataggaaagatgaatcatttccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||| |||    
T  43352937 acttaaatatcaaagaaaataaaacaacacttatctaaagaaaaattacatgaaatagttttagatggtatttcatatgggaaaggtgaatccttttcca 43352838  T
Q  101 ccataggaaatgtgatatttaccattaaattaaataggtgcac 143  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  43352837 ccataggaaaggtgatatttaccattaaattaaataggtgcac 43352795  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 43352193 - 43352295
Alignment:
Q  106 ggaaatgtgatatttaccattaaattaaataggtgcaccgatttttattgtggactatctgcatcatatcttttttacctgtatcttcaaccttagtatc 205  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||| |||||||||    
T  43352193 ggaaatgtgatatttaccatcagattaaatagatgcaccgatttttattatggactatctacatcatat-ttttttacctttatcttcaagcttagtatc 43352291  T
Q  206 atga 209  Q
    ||||    
T  43352292 atga 43352295  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 30422828 - 30422682
Alignment:
Q  64 ggtggtatttcatataggaaagatgaatcatttcccaccataggaaatgtgatatttaccattaaattaaataggtgcaccgatttttattgtggactat 163  Q
    ||||| |||||| || |||||| |||||| |||||||||||  |||| ||||||| |||||||| |||||||||||||||| ||||| ||||||| ||||    
T  30422828 ggtggcatttcacatgggaaaggtgaatc-tttcccaccatgagaaaggtgatatctaccattagattaaataggtgcaccaatttt-attgtggtctat 30422731  T
Q  164 ctgcatcatatcttttttacctgtatcttcaaccttagtatcatgaact 212  Q
    || |||||||| |||||| ||| |||||| |||||||||||||||||||    
T  30422730 ctacatcatatattttttccctttatctttaaccttagtatcatgaact 30422682  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 2860673 - 2860614
Alignment:
Q  4 taaatatcaaagaaaataaaacaacacttatctaaagaaaaattacatgaaatagtttta 63  Q
    |||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  2860673 taaatatcaaagaaaataaaacgacacttatctaaagaaaggttacatgaaatagtttta 2860614  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 39908503 - 39908625
Alignment:
Q  87 tgaatcatttcccaccataggaaatgtgatatttaccattaaattaaataggtgcaccgatttttattgtggactatctgcatcatatcttttttacctg 186  Q
    |||||| |||||||| || | ||| ||||||| |||||||| ||||||||||||||  |||||||||||||| |||||| |||||||| |||| |   |     
T  39908503 tgaatcctttcccactatggaaaaggtgatatctaccattagattaaataggtgcat-gatttttattgtggtctatctacatcatattttttctt--tt 39908599  T
Q  187 tatcttcaaccttagtatcatgaact 212  Q
    |||||||||||||  |||||||||||    
T  39908600 tatcttcaaccttgatatcatgaact 39908625  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36040431 - 36040369
Alignment:
Q  1 acttaaatatcaaagaaaataaaacaacacttatctaaagaaaaattacatgaaatagtttta 63  Q
    ||||||| ||||||||||||||||| || ||||||||||| ||  ||||||||||||||||||    
T  36040431 acttaaacatcaaagaaaataaaacgactcttatctaaaggaaggttacatgaaatagtttta 36040369  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 2297142 - 2297224
Alignment:
Q  124 attaaattaaataggtgcaccgatttttattgtggactatctgcatcatatcttttttacctgtatcttcaaccttagtatcat 207  Q
    |||| |||| |||||||||| |||||| ||| ||| |||||  |||||||||||||||  || |||||||||| ||||||||||    
T  2297142 attagattagataggtgcactgatttt-attatggtctatccacatcatatcttttttcactttatcttcaactttagtatcat 2297224  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 4375078 - 4375038
Alignment:
Q  64 ggtggtatttcatataggaaagatgaatcatttcccaccat 104  Q
    ||||| ||||||||| ||||||||||||||||| |||||||    
T  4375078 ggtggcatttcatatgggaaagatgaatcattttccaccat 4375038  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 31807257 - 31807316
Alignment:
Q  148 ttttattgtggactatctgcatcatatcttttttacctgtatcttcaaccttagtatcat 207  Q
    ||||||||||| |||||  |||||||||||||||  || |||||||||||||||||||||    
T  31807257 ttttattgtggtctatccacatcatatcttttttcactttatcttcaaccttagtatcat 31807316  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 14947449 - 14947389
Alignment:
Q  148 ttttattgtggactatctgcatcatatcttttttac-ctgtatcttcaaccttagtatcat 207  Q
    ||||||||||| |||||  ||||||||||||||| | || |||||||||||||||||||||    
T  14947449 ttttattgtggtctatccacatcatatctttttttcactttatcttcaaccttagtatcat 14947389  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49746 - 49807
Alignment:
Q  1 acttaaatatcaaagaaaataaaacaacacttatctaaagaaaaattacatgaaatagtttt 62  Q
    ||||||||||| ||||||||||||| ||||||||| | |||||   ||||| ||||||||||    
T  49746 acttaaatatcgaagaaaataaaactacacttatccagagaaaggctacattaaatagtttt 49807  T

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