View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8685_low_12 (Length: 216)
Name: NF8685_low_12
Description: NF8685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8685_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 43352666 - 43352467
Alignment:
| Q |
1 |
attcaagtaataatttgagaaagggaacgtgaaaataaggaagaagaaaaaagaaatgtatgcattccagaatctagatatgtattagaaacttaatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||| |
|
|
| T |
43352666 |
attcaagtaataatttgagaaagggaacgtgaaaataaggaagaagaaaaaagaaatgtatgcattccaaaatctagatctatagtagaaacttaatttc |
43352567 |
T |
|
| Q |
101 |
aacagatttgttacacgtccatgactatattgcaaacatatgcttcattataacatctttatagataaaaactatagaacaccatcaattaattgcaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43352566 |
aacagatttgttacacgtccatgactatattgcaaacatatgcttcattataacatctttttagataaaaactatacaacaccatcaattaattgcaaac |
43352467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 45059970 - 45059892
Alignment:
| Q |
104 |
agatttgttacacgtccatgactatattgca-aacatatgcttcattataacatctttatagataaaaactatagaaca |
181 |
Q |
| |
|
||||||||||||| ||||||| |||||| || ||||||||||| || ||||||||||| ||||||||| ||||| |||| |
|
|
| T |
45059970 |
agatttgttacacttccatgattatattacataacatatgctttatcataacatctttttagataaaatctatacaaca |
45059892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University