View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8685_low_3 (Length: 367)

Name: NF8685_low_3
Description: NF8685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8685_low_3
NF8685_low_3
[»] chr8 (14 HSPs)
chr8 (1-248)||(7388204-7388451)
chr8 (232-353)||(7388588-7388709)
chr8 (19-69)||(32161484-32161534)
chr8 (1-66)||(43421477-43421542)
chr8 (3-78)||(2148338-2148413)
chr8 (19-108)||(7681456-7681545)
chr8 (11-80)||(10381373-10381442)
chr8 (7-62)||(29841249-29841304)
chr8 (1-79)||(37042526-37042604)
chr8 (19-93)||(44873224-44873298)
chr8 (19-68)||(29866126-29866175)
chr8 (19-78)||(24556997-24557056)
chr8 (34-68)||(7392173-7392207)
chr8 (11-60)||(6978416-6978465)
[»] chr5 (11 HSPs)
chr5 (1-68)||(980224-980291)
chr5 (3-68)||(5568976-5569041)
chr5 (3-68)||(33824811-33824876)
chr5 (19-80)||(34751170-34751231)
chr5 (3-62)||(39509128-39509187)
chr5 (3-65)||(35676332-35676394)
chr5 (20-108)||(25818999-25819089)
chr5 (19-66)||(43144527-43144574)
chr5 (19-68)||(5069805-5069854)
chr5 (19-80)||(26459644-26459705)
chr5 (19-68)||(36744901-36744950)
[»] chr2 (4 HSPs)
chr2 (3-105)||(27447781-27447883)
chr2 (5-110)||(38417711-38417816)
chr2 (19-108)||(7700263-7700352)
chr2 (22-107)||(16639293-16639378)
[»] chr3 (14 HSPs)
chr3 (3-111)||(30136505-30136612)
chr3 (3-111)||(30142634-30142741)
chr3 (3-111)||(30146056-30146163)
chr3 (3-110)||(6714446-6714552)
chr3 (19-107)||(24309801-24309889)
chr3 (19-68)||(23778219-23778268)
chr3 (35-107)||(35504214-35504286)
chr3 (19-79)||(36475420-36475480)
chr3 (19-62)||(25032194-25032237)
chr3 (19-62)||(26285914-26285957)
chr3 (37-80)||(7856449-7856492)
chr3 (34-68)||(19832034-19832068)
chr3 (6-54)||(395975-396023)
chr3 (34-62)||(19831986-19832014)
[»] chr6 (8 HSPs)
chr6 (3-112)||(1975330-1975439)
chr6 (19-80)||(16461722-16461783)
chr6 (19-64)||(2919978-2920023)
chr6 (1-58)||(8150852-8150909)
chr6 (9-58)||(30702669-30702718)
chr6 (40-110)||(6689130-6689200)
chr6 (13-63)||(19267059-19267109)
chr6 (9-55)||(30705270-30705316)
[»] chr1 (7 HSPs)
chr1 (3-107)||(23347781-23347885)
chr1 (19-66)||(10781310-10781357)
chr1 (34-68)||(281144-281178)
chr1 (34-68)||(9516763-9516797)
chr1 (34-68)||(43909373-43909407)
chr1 (35-68)||(35438898-35438931)
chr1 (20-80)||(1405901-1405961)
[»] chr4 (9 HSPs)
chr4 (19-108)||(33517953-33518042)
chr4 (19-64)||(2158598-2158643)
chr4 (3-107)||(1111924-1112027)
chr4 (11-59)||(50723231-50723279)
chr4 (1-80)||(35390429-35390508)
chr4 (19-80)||(2813941-2814002)
chr4 (19-68)||(4377200-4377249)
chr4 (1-54)||(30804379-30804432)
chr4 (20-92)||(17938868-17938940)
[»] chr7 (15 HSPs)
chr7 (4-68)||(49143969-49144033)
chr7 (3-62)||(25232916-25232975)
chr7 (3-45)||(39785484-39785526)
chr7 (19-68)||(30074723-30074772)
chr7 (22-79)||(34346903-34346960)
chr7 (3-58)||(13094637-13094692)
chr7 (3-50)||(26787258-26787305)
chr7 (21-64)||(32221932-32221975)
chr7 (19-62)||(33941720-33941763)
chr7 (34-68)||(7899448-7899482)
chr7 (34-68)||(26050128-26050162)
chr7 (34-68)||(26059487-26059521)
chr7 (3-48)||(16841069-16841114)
chr7 (3-47)||(26824515-26824559)
chr7 (21-101)||(46090290-46090370)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-68)||(461422-461469)
[»] scaffold0535 (1 HSPs)
scaffold0535 (1-79)||(9625-9703)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7388204 - 7388451
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7388204 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatctgcattattttttctctgatattttagttacgcatataccgaatgtc 7388303  T
Q  101 tagatccgtctttgttcattgtat-cttcaagtatctgaaaatttccttgaatgcttcccgatgaagcttaactatttagatttaagttttttcatataa 199  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7388304 tagatccgtctttgtttattgtatccttcaagtatctgaaaatttccttgaatgcttcccgatgaagc-taactatttagatttaagttttttcatataa 7388402  T
Q  200 acctttagtctttctttgatttaatatttgttaaagttaagtttgaagt 248  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7388403 acctttggtctttctttgatttaatatttgttaaagttaagtttgaagt 7388451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 232 - 353
Target Start/End: Original strand, 7388588 - 7388709
Alignment:
Q  232 aaagttaagtttgaagtcatgcaaaattcaattcttattcacctttataagtccatgtacaacacaacaataaaggagaaaagataaaagcttgtcagaa 331  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7388588 aaagttaagtttgaagtcctgcaaaattcaattcttattcacctttataagtccatgtacaacacaacaataaaggagaaaagataaaagcttgtcagaa 7388687  T
Q  332 cccagccactatgttctgatgt 353  Q
    ||||||||||||||||| ||||    
T  7388688 cccagccactatgttctaatgt 7388709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 32161484 - 32161534
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctc 69  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32161484 atcaaacaatgttatttcttatttttaatataatttgcattattttttctc 32161534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43421542 - 43421477
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattatttttt 66  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| ||||||    
T  43421542 ttattgtaattgtattgcatcaaacaatgttattacttatttttaatatagtttgcattctttttt 43421477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 2148413 - 2148338
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatatttt 78  Q
    |||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||  ||||| ||| |||||    
T  2148413 attgtaattgtattgcatcaatcaatgttatttcttatttttagtataatttgcattatagtttctttgaaatttt 2148338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 7681456 - 7681545
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatccg 108  Q
    |||||||||||||| ||||| ||||||||||| |||| |||||| ||||| ||| ||||||   || |||||||| ||||||||||||||    
T  7681456 atcaaacaatgttatttcttgtttttaatatagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccg 7681545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 10381442 - 10381373
Alignment:
Q  11 tgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| ||||| ||| |||||||    
T  10381442 tgtattatatcaaacaatgttacttcttatttttaatatagtttacattattgtttctttgaaattttag 10381373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 29841249 - 29841304
Alignment:
Q  7 taattgtattacatcaaacaatgttaattcttatttttaatataatttgcattatt 62  Q
    ||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  29841249 taattatattatatcaaacaatgttatttcttattttttatatagtttgcattatt 29841304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 37042526 - 37042604
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatatttta 79  Q
    ||||||||||||||||  || ||| ||| ||  ||||||||||||||||||| | ||||||||||||| ||| ||||||    
T  37042526 ttattgtaattgtattgtattaaataatattttttcttatttttaatataatctacattattttttctttgaaatttta 37042604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 44873298 - 44873224
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatatacc 93  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||| ||||| | | ||||||| | ||||| ||||    
T  44873298 atcaaacaatattatttcttatttttaatatagtttgcattattgtttctttaaaattttagctccgcatgtacc 44873224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 29866175 - 29866126
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||| ||| ||||||||| ||||||| |||||||||||||||||    
T  29866175 atcaaacaatattatttcttatttataatatagtttgcattattttttct 29866126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 24556997 - 24557056
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatatttt 78  Q
    |||||||||||||| || ||||||||||||||||||  |||||| ||||| ||| |||||    
T  24556997 atcaaacaatgttatttattatttttaatataatttaaattattgtttctttgaaatttt 24557056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 7392207 - 7392173
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  7392207 ttcttatttttaatataatttgcattattatttct 7392173  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 6978416 - 6978465
Alignment:
Q  11 tgtattacatcaaacaatgttaattcttatttttaatataatttgcatta 60  Q
    ||||||| |||||||||| ||| ||||||||||||||||| ||| |||||    
T  6978416 tgtattatatcaaacaatattatttcttatttttaatatagtttacatta 6978465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 980224 - 980291
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  980224 ttattgtaattgtattacatcaaacaatgttatttcttatttttaatataatttgcattattatttct 980291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 5569041 - 5568976
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  5569041 attgtaattgtattgcatcaaccaatgttatttcttatttttaatatagtttgcattattttttct 5568976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 33824811 - 33824876
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  33824811 attgtaattgtactgcatcaaacaatgttatttcttatttttaatatattttgcattattgtttct 33824876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 34751170 - 34751231
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  34751170 atcaaacaatgttacttcttatttttaatataatttgcattattgtttctttgaaattttag 34751231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 39509187 - 39509128
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattatt 62  Q
    ||||||||||||||  ||||||||||||||  |||||||||| |||||||||||||||||    
T  39509187 attgtaattgtattgtatcaaacaatgttatatcttatttttcatataatttgcattatt 39509128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 35676332 - 35676394
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttt 65  Q
    ||||||||| | || ||||| ||||| ||| ||||||||||||||||| ||||||||||||||    
T  35676332 attgtaattattttgcatcatacaatattatttcttatttttaatatagtttgcattattttt 35676394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 25819089 - 25818999
Alignment:
Q  20 tcaaacaatgttaattcttatttttaatataatttgcat--tattttttctctgatattttagttacgcatataccgaatgtctagatccg 108  Q
    ||||||||||||| ||| ||||||||||||| ||| |||  |||||||||| ||| |||||||   | ||| |||| ||||||||||||||    
T  25819089 tcaaacaatgttatttcctatttttaatatagtttacattatattttttctttgaaattttagccccacatgtaccaaatgtctagatccg 25818999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 43144574 - 43144527
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatttttt 66  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  43144574 atcaaacaatgttatttcttatttataatatagtttgcataatttttt 43144527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5069854 - 5069805
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||| ||| ||||||||||||||||| ||| ||||||| |||||    
T  5069854 atcaaacaatattacttcttatttttaatatagtttacattattgtttct 5069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 26459705 - 26459644
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    |||||||||||||  ||||||||||||||||  ||||||| ||| ||||| ||| |||||||    
T  26459705 atcaaacaatgttctttcttatttttaatatggtttgcataattgtttctttgaaattttag 26459644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 36744950 - 36744901
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||| ||| |||||| |||||||||| ||||||||||| |||||    
T  36744950 atcaaacaatattatttcttacttttaatatagtttgcattattgtttct 36744901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 27447781 - 27447883
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||| ||| |||||||  || |||||| | ||||||||    
T  27447781 attgtaattgtattacatcaaacaatattatttcttatttttaacataatctgcattattttttctttgaaattttagccacacatatatcaaatgtcta 27447880  T
Q  103 gat 105  Q
    |||    
T  27447881 gat 27447883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 38417816 - 38417711
Alignment:
Q  5 tgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctaga 104  Q
    |||||||||||| |||||| ||| |||| |||||||||||||||||  |||||||| ||||||| | | |||||||  || |||||||||||| ||||||    
T  38417816 tgtaattgtattgcatcaaccaaagttatttcttatttttaatatagcttgcattagtttttctttaaaattttaggcacacatataccgaatatctaga 38417717  T
Q  105 tccgtc 110  Q
    ||||||    
T  38417716 tccgtc 38417711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 7700352 - 7700263
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatccg 108  Q
    |||||||||||||| ||||||||||| ||||| ||| ||||||| ||||| ||| |||||||  || |||||| | ||||| ||||||||    
T  7700352 atcaaacaatgttatttcttattttttatatagtttacattattgtttctttgaaattttagccacacatatatcaaatgtgtagatccg 7700263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 16639293 - 16639378
Alignment:
Q  22 aaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatcc 107  Q
    ||||||||| | ||||||||||||||||| |||| |||||| ||||| | | |||||||| |  |||||||| |||||||| ||||    
T  16639293 aaacaatgtaatttcttatttttaatatagtttgtattattgtttctttaaaattttagtcatacatataccaaatgtctaaatcc 16639378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 30136612 - 30136505
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||| |||||||||  |||||||||||||| ||||||||||| ||||  ||||||||||||||| | | | |||||||| || |||||||||||||||||    
T  30136612 attgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatttttt-tttaaaattttagtcacacatataccgaatgtcta 30136514  T
Q  103 gatccgtct 111  Q
    |||||||||    
T  30136513 gatccgtct 30136505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 30142741 - 30142634
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||| |||||||||  |||||||||||||| ||||||||||| ||||  ||||||||||||||| | | | |||||||| || |||||||||||||||||    
T  30142741 attgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatttttt-tttaaaattttagtcacacatataccgaatgtcta 30142643  T
Q  103 gatccgtct 111  Q
    |||||||||    
T  30142642 gatccgtct 30142634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 30146163 - 30146056
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||| |||||||||  |||||||||||||| ||||||||||| ||||  ||||||||||||||| | | | |||||||| || |||||||||||||||||    
T  30146163 attgaaattgtattgtatcaaacaatgttatttcttatttttcatattgtttgcattatttttt-tttaaaattttagtcacacatataccgaatgtcta 30146065  T
Q  103 gatccgtct 111  Q
    |||||||||    
T  30146064 gatccgtct 30146056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 6714446 - 6714552
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||||||||  ||||||| ||||| | | |||||||| ||  || |||||||||| ||    
T  6714446 attgtaattgtattacatcaaata-tgttatttcttatttttaatataattaacattattatttctttaaaattttagtcacatatctaccgaatgttta 6714544  T
Q  103 gatccgtc 110  Q
    ||||||||    
T  6714545 gatccgtc 6714552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 24309889 - 24309801
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatcc 107  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||| ||||| ||| ||||||| | ||||| |||| || |||| |||||    
T  24309889 atcaaacaatattatttcttatttttaatatagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 23778268 - 23778219
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  23778268 atcaaacaatgttatttcttatttttaatatagtttgtattattttttct 23778219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 35504214 - 35504286
Alignment:
Q  35 tcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatcc 107  Q
    |||||||||||||||||||||||||||||||||| | | |||||||  || |||| ||| ||| |||||||||    
T  35504214 tcttatttttaatataatttgcattattttttcttttaaattttagccacacatacaccaaatatctagatcc 35504286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 36475480 - 36475420
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatatttta 79  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||| ||||||    
T  36475480 atcaaacaatgttatttcttatttttaatatagtttgcgttattgtttctttgaaatttta 36475420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25032194 - 25032237
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatt 62  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  25032194 atcaaacaatgttatttcttatttttaatgtaatttgcattatt 25032237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 26285914 - 26285957
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatt 62  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  26285914 atcaaacaatgttatttcttatttttaatatagtttgcattatt 26285957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 7856492 - 7856449
Alignment:
Q  37 ttatttttaatataatttgcattattttttctctgatattttag 80  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||    
T  7856492 ttatttttaatataatttgcattattgtttctttgaaattttag 7856449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 19832034 - 19832068
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  19832034 ttcttatttttaatataatttgcattattgtttct 19832068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 395975 - 396023
Alignment:
Q  6 gtaattgtattacatcaaacaatgttaattcttatttttaatataattt 54  Q
    |||| ||||||  |||||||||||||| |||||||||||| ||||||||    
T  395975 gtaaatgtattgtatcaaacaatgttatttcttatttttagtataattt 396023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 19831986 - 19832014
Alignment:
Q  34 ttcttatttttaatataatttgcattatt 62  Q
    |||||||||||||||||||||||||||||    
T  19831986 ttcttatttttaatataatttgcattatt 19832014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 1975330 - 1975439
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    ||||| ||||||||  ||||| |||||||| || |||||||||||||| ||| ||||||||||||| | | ||||||   || |||||||||||||||||    
T  1975330 attgttattgtattgaatcaaccaatgttatttattatttttaatatagtttacattattttttctttaaaattttaaccacacatataccgaatgtcta 1975429  T
Q  103 gatccgtctt 112  Q
    ||||||||||    
T  1975430 gatccgtctt 1975439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 16461722 - 16461783
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| |||||||    
T  16461722 atcaaacaatgttatttcttatttttaatatagtttgcattattgtttctttgaaattttag 16461783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 2919978 - 2920023
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatttt 64  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  2919978 atcaaacaatgttatttcttatttttaatatagtttgcattatttt 2920023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8150852 - 8150909
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcat 58  Q
    |||||||||||||||| ||||||||||||||||||||| || ||| |||||| |||||    
T  8150852 ttattgtaattgtattgcatcaaacaatgttaattcttgttgttagtataatctgcat 8150909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 30702718 - 30702669
Alignment:
Q  9 attgtattacatcaaacaatgttaattcttatttttaatataatttgcat 58  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||    
T  30702718 attgtattgtatcaaacaatgttatttcttatttttagtataatttgcat 30702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 6689200 - 6689130
Alignment:
Q  40 tttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatccgtc 110  Q
    ||||||||||||||||||||||| ||||| ||  |||||||| |  ||||| || ||| ||||||||||||    
T  6689200 tttttaatataatttgcattattgtttctttgtaattttagtcaaacatatcccaaatatctagatccgtc 6689130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 19267059 - 19267109
Alignment:
Q  13 tattacatcaaacaatgttaattcttatttttaatataatttgcattattt 63  Q
    ||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||    
T  19267059 tattatatcaaataatgttatttcttatttttaatatagtttacattattt 19267109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 30705316 - 30705270
Alignment:
Q  9 attgtattacatcaaacaatgttaattcttatttttaatataatttg 55  Q
    ||||||||  |||||||||||||| |||||||||||| |||||||||    
T  30705316 attgtattgtatcaaacaatgttatttcttatttttagtataatttg 30705270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 23347885 - 23347781
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||||||  ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| ||| | ||| |||||||  || ||||||||||||| |||    
T  23347885 attgtaagcgtattgcatcaaacaatgttatttcttatatttaatatagtttgcattattgtttatttgaaattttagccacacatataccgaatgccta 23347786  T
Q  103 gatcc 107  Q
    |||||    
T  23347785 gatcc 23347781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 10781310 - 10781357
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatttttt 66  Q
    |||||||||| ||| ||||||||||||||||| |||||||| ||||||    
T  10781310 atcaaacaatattatttcttatttttaatatagtttgcattttttttt 10781357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 281144 - 281178
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  281144 ttcttatttttaatataatttgcattattgtttct 281178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 9516763 - 9516797
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  9516763 ttcttatttttaatataatttgcattattgtttct 9516797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 43909373 - 43909407
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  43909373 ttcttatttttaatataatttgcattattgtttct 43909407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 35438898 - 35438931
Alignment:
Q  35 tcttatttttaatataatttgcattattttttct 68  Q
    |||||||||||||||||||||||||||| |||||    
T  35438898 tcttatttttaatataatttgcattattgtttct 35438931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 1405961 - 1405901
Alignment:
Q  20 tcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    ||||| ||||||| || |||||||||  ||| ||| ||||||||||||| |||||||||||    
T  1405961 tcaaataatgttattttttatttttaccatagtttacattattttttctttgatattttag 1405901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 33518042 - 33517953
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtctagatccg 108  Q
    |||||||||| ||| |||||||||||||||||||||| |||||| ||||| | | ||||||  | |||||||||| ||||||||||||||    
T  33518042 atcaaacaatattatttcttatttttaatataatttgtattattgtttctttaaaattttaactccgcatatacctaatgtctagatccg 33517953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 2158643 - 2158598
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatttt 64  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  2158643 atcaaacaatgttatttcttatttttaatatagtttgcattatttt 2158598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 1112027 - 1111924
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtcta 102  Q
    |||||||||||||  ||||||||||||||| |||||||| |||||| | ||||||||||| ||||  ||| |||||||  ||  |||||  |||||||||    
T  1112027 attgtaattgtatcgcatcaaacaatgttatttcttattattaata-agtttgcattattatttcattgaaattttagccacatatatattgaatgtcta 1111929  T
Q  103 gatcc 107  Q
    |||||    
T  1111928 gatcc 1111924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 50723231 - 50723279
Alignment:
Q  11 tgtattacatcaaacaatgttaattcttatttttaatataatttgcatt 59  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  50723231 tgtattatatcaaacaatgttatttcttatttttaatatagtttgcatt 50723279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35390508 - 35390429
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    ||||||||||| |||| ||||||||||||||| || ||||||||| |||||||| ||| ||  ||||| ||| |||||||    
T  35390508 ttattgtaattttattgcatcaaacaatgttatttattatttttagtataatttacatcataatttctttgaaattttag 35390429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2814002 - 2813941
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttag 80  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||| ||||| ||| |||||||    
T  2814002 atcaaacaattttatttcatatttttaatatagtttgcattattgtttctttgaaattttag 2813941  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 4377249 - 4377200
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||| ||| ||||||||||||||||| ||||||||||| |||||    
T  4377249 atcaaacaatattatttcttatttttaatatagtttgcattattgtttct 4377200  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30804432 - 30804379
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataattt 54  Q
    ||||||||| ||||||  |||||||||||||| || ||||||||| ||||||||    
T  30804432 ttattgtaaatgtattgaatcaaacaatgttatttattatttttagtataattt 30804379  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 17938940 - 17938868
Alignment:
Q  20 tcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatatac 92  Q
    ||||||||| ||| |||||||||||||| |||||||| | ||||||| | | | |||||||| || |||||||    
T  17938940 tcaaacaatattatttcttatttttaatgtaatttgcttcatttttttttttaaattttagtcacacatatac 17938868  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 49144033 - 49143969
Alignment:
Q  4 ttgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||| | || |||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  49144033 ttgtaattgtaatgcaccaaacaatgttatttcttatttttaatatagtttgtattattttttct 49143969  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 25232975 - 25232916
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattatt 62  Q
    ||||||||| ||||  |||||||||||||| ||||||||||| ||||| |||||||||||    
T  25232975 attgtaattatattgtatcaaacaatgttatttcttatttttcatatagtttgcattatt 25232916  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 39785526 - 39785484
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttattttta 45  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  39785526 attgtaattgtattgcatcaaacaatgttatttcttattttta 39785484  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 30074723 - 30074772
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    ||||||| |||||  |||||||||||||||||||||||||||| ||||||    
T  30074723 atcaaacgatgttgtttcttatttttaatataatttgcattatcttttct 30074772  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 34346903 - 34346960
Alignment:
Q  22 aaacaatgttaattcttatttttaatataatttgcattattttttctctgatatttta 79  Q
    ||||||||||| |||||||||||||| || ||||||||||| ||||| ||| ||||||    
T  34346903 aaacaatgttatttcttatttttaatgtagtttgcattattgtttctttgaaatttta 34346960  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 13094637 - 13094692
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcat 58  Q
    ||||||||||| || |||| |||||||||| |||||||||||| | ||||||||||    
T  13094637 attgtaattgtgttgcatctaacaatgttatttcttatttttagtttaatttgcat 13094692  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 26787305 - 26787258
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaatata 50  Q
    |||||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  26787305 attgtaattgtattgcattaaacaatgttatttcttatctttaatata 26787258  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 32221932 - 32221975
Alignment:
Q  21 caaacaatgttaattcttatttttaatataatttgcattatttt 64  Q
    |||||||||||| ||||||||||||||||||| | |||||||||    
T  32221932 caaacaatgttatttcttatttttaatataatatacattatttt 32221975  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 33941720 - 33941763
Alignment:
Q  19 atcaaacaatgttaattcttatttttaatataatttgcattatt 62  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||    
T  33941720 atcaaacaatgttatttcttatttttaatatagtttgtattatt 33941763  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 7899482 - 7899448
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  7899482 ttcttatttttaatataatttgcattattgtttct 7899448  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 26050162 - 26050128
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  26050162 ttcttatttttaatataatttgcattattgtttct 26050128  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 26059521 - 26059487
Alignment:
Q  34 ttcttatttttaatataatttgcattattttttct 68  Q
    ||||||||||||||||||||||||||||| |||||    
T  26059521 ttcttatttttaatataatttgcattattgtttct 26059487  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 16841069 - 16841114
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaata 48  Q
    |||||||||||||| ||||||| ||| ||| |||||||||||||||    
T  16841069 attgtaattgtattgcatcaaaaaatattatttcttatttttaata 16841114  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 26824515 - 26824559
Alignment:
Q  3 attgtaattgtattacatcaaacaatgttaattcttatttttaat 47  Q
    |||||||||||||| ||||||| ||| ||| ||||||||||||||    
T  26824515 attgtaattgtattgcatcaaataatattatttcttatttttaat 26824559  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 46090290 - 46090370
Alignment:
Q  21 caaacaatgttaattcttatttttaatataatttgcattattttttctctgatattttagttacgcatataccgaatgtct 101  Q
    |||||||||||| || |||||||||||||| |||| || ||| ||||| ||  || |||||||| |||||| | |||||||    
T  46090290 caaacaatgttattttttatttttaatatagtttgtatcattgtttctttgtaatattagttacacatatatcaaatgtct 46090370  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 461422 - 461469
Alignment:
Q  21 caaacaatgttaattcttatttttaatataatttgcattattttttct 68  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  461422 caaacaatgttacttcttatttttaatatagtttgcattattatttct 461469  T

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Target: scaffold0535 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9703 - 9625
Alignment:
Q  1 ttattgtaattgtattacatcaaacaatgttaattcttatttttaatataatttgcattattttttctctgatatttta 79  Q
    |||||||||||| | | ||||||||| ||||| ||  ||||||||||||  ||||||||||||||||| ||| ||||||    
T  9703 ttattgtaattgcactgcatcaaacattgttattttatatttttaatattgtttgcattattttttctttgaaatttta 9625  T

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