View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8685_low_4 (Length: 362)

Name: NF8685_low_4
Description: NF8685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8685_low_4
NF8685_low_4
[»] chr5 (2 HSPs)
chr5 (192-353)||(37017024-37017185)
chr5 (18-184)||(37016765-37016931)
[»] chr7 (1 HSPs)
chr7 (40-99)||(26991191-26991249)
[»] chr1 (2 HSPs)
chr1 (54-116)||(13837141-13837202)
chr1 (51-105)||(13845571-13845624)
[»] chr2 (1 HSPs)
chr2 (76-115)||(1595021-1595060)
[»] chr3 (1 HSPs)
chr3 (51-105)||(26914204-26914257)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 192 - 353
Target Start/End: Original strand, 37017024 - 37017185
Alignment:
Q  192 ttttcattacattatgaaacaaaatgtctgtataccttgagtattaatggttgcactgcactaggacccctagatgaaaacccagccataattggagatg 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37017024 ttttcattacattatgaaacaaaatgtctgtataccttgagtattaatggttgcactgcactaggacccctagatgaaaacccagccataattggagatg 37017123  T
Q  292 gctttaatcctatatatgttcttgcatcagacatgtaagcaaccattttcctgcagtataat 353  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37017124 gctttaatcctgtatatgttcttgcatcagacatgtaagcaaccattttcctgcagtataat 37017185  T

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Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 37016765 - 37016931
Alignment:
Q  18 cttagggctgagacaatgatccatcagtgtcgttttaacaaaaacaagagaaaacgaaatataagttgagttttgaggcattaatattcattttccttgn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37016765 cttagggctgagacaatgatccatcagtgtcgttttaacaaaaacaagagaaaacgaaatataagttgagttttgaggcattaatattcattttccttgt 37016864  T
Q  118 nnnnnnatcgaattgatgccgattgggacatcgtctcagtcacaagtatgagtaatactatatactt 184  Q
          ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37016865 ttttttatcaaattgatgccgattgggacatcgtctcattcacaagtatgagtaatactatatactt 37016931  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 26991191 - 26991249
Alignment:
Q  40 atcagtgtcgttttaacaaaaacaagagaaaacgaaatataagttgagttttgaggcatt 99  Q
    |||||||| | |||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  26991191 atcagtgttgatttaacaaaaacaagagaaaac-aaacataagatgagttttgaggcatt 26991249  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 13837202 - 13837141
Alignment:
Q  54 aacaaaaacaagagaaaacgaaatataagttgagttttgaggcattaatattcattttccttg 116  Q
    ||||||| ||||||||||| ||||| || |||||||||||||||||||||||  |||||||||    
T  13837202 aacaaaaccaagagaaaac-aaatacaatttgagttttgaggcattaatatttgttttccttg 13837141  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 13845624 - 13845571
Alignment:
Q  51 tttaacaaaaacaagagaaaacgaaatataagttgagttttgaggcattaatatt 105  Q
    |||||||||||||||||||||| | ||| || |||||||||||||| ||||||||    
T  13845624 tttaacaaaaacaagagaaaac-agatacaatttgagttttgaggctttaatatt 13845571  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 1595021 - 1595060
Alignment:
Q  76 atataagttgagttttgaggcattaatattcattttcctt 115  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  1595021 atataagttgagttttgagacactaatattcattttcctt 1595060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 26914204 - 26914257
Alignment:
Q  51 tttaacaaaaacaagagaaaacgaaatataagttgagttttgaggcattaatatt 105  Q
    ||||| |||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  26914204 tttaataaaaacaagaaaaaacgta-tataagttgagttttgaggaattaatatt 26914257  T

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