View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_high_13 (Length: 247)
Name: NF8686_high_13
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 434605 - 434839
Alignment:
| Q |
1 |
tttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagat |
100 |
Q |
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| T |
434605 |
tttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagat |
434704 |
T |
|
| Q |
101 |
gaatcgaatttaattctaacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaagacaacg |
200 |
Q |
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| T |
434705 |
gaatcgaatttaattctcacaaaaacactaattaactgaagcaaacgcgaaaaactacctttgaaaatctgggcgacatccatgaaattggaagacgacg |
434804 |
T |
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| Q |
201 |
aaaa-ccctaatcttaaaatgagatccatgatgtcc |
235 |
Q |
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| T |
434805 |
aaaatccctaatctt-aaatgagatccatgatgtcc |
434839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 17512754 - 17512681
Alignment:
| Q |
121 |
aaaaacactaattaactgaagcaaacgcgaaaaactacctttgtaaatctgggcgacatccatgaaattggaag |
194 |
Q |
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| T |
17512754 |
aaaaacaataactaactgaaacaaacgcgaaaaactacatttgaaaatctaggcgacatccatgaaattggaag |
17512681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 17512893 - 17512780
Alignment:
| Q |
2 |
ttgaatcccttgtattcaatgagtcgaagtcaattgagactcaatgacaaaggtataactaactgcataatttatgaatttggatccataatcttagatg |
101 |
Q |
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|||||||||||| |||||| ||| || |||||||||||||||||||||||||| |||||| | | |||||||||||||| | || |||||||| ||| |
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| T |
17512893 |
ttgaatcccttggcttcaataagttaaaatcaattgagactcaatgacaaaggtacaactaatcgtagaatttatgaatttgaagccctaatcttaaatg |
17512794 |
T |
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| Q |
102 |
aatcgaatttaatt |
115 |
Q |
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||| ||||| |||| |
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| T |
17512793 |
aattgaattcaatt |
17512780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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