View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8686_high_14 (Length: 241)

Name: NF8686_high_14
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8686_high_14
NF8686_high_14
[»] chr1 (5 HSPs)
chr1 (1-224)||(34661896-34662119)
chr1 (51-116)||(49242959-49243025)
chr1 (70-116)||(6166212-6166258)
chr1 (70-116)||(11023307-11023353)
chr1 (71-116)||(6061246-6061291)
[»] chr6 (2 HSPs)
chr6 (70-114)||(10826170-10826214)
chr6 (62-116)||(21254855-21254910)
[»] chr5 (3 HSPs)
chr5 (54-110)||(19239350-19239406)
chr5 (70-116)||(24045923-24045969)
chr5 (54-101)||(4292225-4292273)
[»] chr3 (3 HSPs)
chr3 (70-101)||(29716677-29716708)
chr3 (62-101)||(30811523-30811563)
chr3 (70-114)||(53074981-53075025)
[»] chr2 (2 HSPs)
chr2 (62-116)||(25747856-25747911)
chr2 (62-116)||(36548278-36548333)
[»] chr8 (3 HSPs)
chr8 (70-116)||(3097182-3097228)
chr8 (51-116)||(38114511-38114577)
chr8 (55-114)||(36114019-36114079)
[»] chr4 (2 HSPs)
chr4 (70-116)||(9893775-9893821)
chr4 (70-116)||(28987082-28987128)
[»] chr7 (3 HSPs)
chr7 (70-119)||(36920138-36920187)
chr7 (62-114)||(47217506-47217559)
chr7 (70-111)||(48134679-48134720)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34661896 - 34662119
Alignment:
Q  1 tcaattctagtatttatgggcttgacattgttataactttttgttattaaatccaacttatttttaatcaaatcaattctctcaaattcaattttatcaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||  | ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  34661896 tcaattatagtatttatgggcttgacattgttataacttttcatcattaaattcaactcatttttaatcaaatcaattctctcaaactcaattttatcaa 34661995  T
Q  101 acttaattttcaccacagcatgataaaacatacactaaaccggatataatcgcaatggaccgcataaactaacacaagtttgaggttgcggtgcgcacag 200  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34661996 acttaattttcaccaccacataataaaacatacactaaaccggatataatcgcaatggaccgcataaactaacacaagtttgaggttgcggtgcgcacag 34662095  T
Q  201 catggggaaagtggtgtctcactt 224  Q
    ||||||||||||||||||||||||    
T  34662096 catggggaaagtggtgtctcactt 34662119  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 49243025 - 49242959
Alignment:
Q  51 atccaacttatttttaatcaaa-tcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||| |||||||| |||| |||||||||||||| |||||| ||||||| |||||| |||||||    
T  49243025 atccaactcatttttaaccaaaatcaattctctcaaactcaattatatcaaaattaattctcaccac 49242959  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 6166212 - 6166258
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||||||||||||||||||| ||||||| | |||| |||||||    
T  6166212 aaatcaattctctcaaattcaattctatcaaaatcaattctcaccac 6166258  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 11023353 - 11023307
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||||    
T  11023353 aaatcaattctctcaaactcaattctatcaaaatcaattttcaccac 11023307  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 6061246 - 6061291
Alignment:
Q  71 aatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||| |||||||||||||| ||||||| | ||||||||||||    
T  6061246 aatcaattatctcaaattcaattctatcaaaatcaattttcaccac 6061291  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 10826170 - 10826214
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcacc 114  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||    
T  10826170 aaatcaattctctcaaactcaattttatcaaaattaattctcacc 10826214  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 21254910 - 21254855
Alignment:
Q  62 ttttaatcaaat-caattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||||||| ||||||||||||| |||||| ||||||||| |||| |||||||    
T  21254910 ttttaatcaaattcaattctctcaaactcaattctatcaaactcaattatcaccac 21254855  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 19239350 - 19239406
Alignment:
Q  54 caacttatttttaatcaaatcaattctctcaaattcaattttatcaaacttaatttt 110  Q
    |||||||||||||||||||   ||||||||||| |||||| ||||||| ||||||||    
T  19239350 caacttatttttaatcaaaatcattctctcaaaatcaattctatcaaatttaatttt 19239406  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 24045923 - 24045969
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||||||||||||||||||| ||||||| | |||| |||||||    
T  24045923 aaatcaattctctcaaattcaattctatcaaaatcaattctcaccac 24045969  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 4292225 - 4292273
Alignment:
Q  54 caacttatttttaatcaaa-tcaattctctcaaattcaattttatcaaa 101  Q
    ||||||||||||||||||| |||||||||||||| | |||| |||||||    
T  4292225 caacttatttttaatcaaaatcaattctctcaaacttaattctatcaaa 4292273  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 29716708 - 29716677
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaa 101  Q
    ||||||||||||||||||||||||||||||||    
T  29716708 aaatcaattctctcaaattcaattttatcaaa 29716677  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 30811563 - 30811523
Alignment:
Q  62 ttttaatcaaa-tcaattctctcaaattcaattttatcaaa 101  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  30811563 ttttaatcaaaatcaattctctcaaattcaattatatcaaa 30811523  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 53074981 - 53075025
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcacc 114  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||    
T  53074981 aaatcaattctctcaaactcaattatatcaaaatcaattttcacc 53075025  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 25747911 - 25747856
Alignment:
Q  62 ttttaatcaaa-tcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| |||| |||||||    
T  25747911 ttttaatcaaaatcaattctctcaaactcaattctatcaaactcaattatcaccac 25747856  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 36548278 - 36548333
Alignment:
Q  62 ttttaatcaaa-tcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    ||||||||||| |||||||||||||| |||||| ||||||| | ||||||||||||    
T  36548278 ttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattttcaccac 36548333  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 3097228 - 3097182
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    ||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  3097228 aaatcaattctctcaaactcaattctatcaaaattaattctcaccac 3097182  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 38114511 - 38114577
Alignment:
Q  51 atccaacttatttttaatcaaa-tcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||||| |||||| |||| |||||||||||||| |||||| ||||||| | |||| |||||||    
T  38114511 atccaacttacttttaaccaaaatcaattctctcaaactcaattctatcaaaataaattctcaccac 38114577  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 36114079 - 36114019
Alignment:
Q  55 aacttatttttaatcaaa-tcaattctctcaaattcaattttatcaaacttaattttcacc 114  Q
    |||||| ||||||||||| |||||||||||||| |||||| ||||||| | |||| |||||    
T  36114079 aacttacttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattctcacc 36114019  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 9893775 - 9893821
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    |||||||||||||||||||||||| ||||||| | |||| |||||||    
T  9893775 aaatcaattctctcaaattcaattctatcaaaatcaattctcaccac 9893821  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 28987082 - 28987128
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccac 116  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||||    
T  28987082 aaatcaattctctcaaactcaattctatcaaaatcaattttcaccac 28987128  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 36920187 - 36920138
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttcaccacagc 119  Q
    ||||||||||| ||||| |||||||||||||| |||||| ||||| ||||    
T  36920187 aaatcaattctttcaaactcaattttatcaaaattaattctcaccgcagc 36920138  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 47217559 - 47217506
Alignment:
Q  62 ttttaatcaaa-tcaattctctcaaattcaattttatcaaacttaattttcacc 114  Q
    ||||||||||| |||||||||||||| |||||| ||||||| | ||||||||||    
T  47217559 ttttaatcaaaatcaattctctcaaactcaattctatcaaaatcaattttcacc 47217506  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 48134679 - 48134720
Alignment:
Q  70 aaatcaattctctcaaattcaattttatcaaacttaattttc 111  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  48134679 aaatcaattctctcaaactcaattctatcaaaattaattttc 48134720  T

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