View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_high_5 (Length: 408)
Name: NF8686_high_5
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 434584 - 434350
Alignment:
| Q |
1 |
ccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttgacatgttaacataaaa |
100 |
Q |
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| T |
434584 |
ccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttgacatgttaacataaaa |
434485 |
T |
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| Q |
101 |
tgaagtttgtgtaatccaaatatatactgtaatttgtttcaaattatgtactctagtttaggtcagttctttttcataagtataatttaagtc--nnnnn |
198 |
Q |
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| T |
434484 |
tgaagattgtgtaatccaaatatatactgtaatttgtttcaaattatgtactctagtttaggtcagttctttttcctaagtataatttaagtcttttttt |
434385 |
T |
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| Q |
199 |
nnnnaagttcttttacaattgaggaagccatttcc |
233 |
Q |
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| T |
434384 |
tttaaagttcttttacaattgaggaagccatttcc |
434350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 230 - 399
Target Start/End: Complemental strand, 434316 - 434147
Alignment:
| Q |
230 |
ttccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtc |
329 |
Q |
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| T |
434316 |
ttccctcagggagctttaatctcctggcaaaagtggaattttcttccacttgacccaagatgacagatttatgattaagacagtcaaaaaatccgaagtc |
434217 |
T |
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| Q |
330 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
399 |
Q |
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| T |
434216 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtataatgtacatct |
434147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 32938459 - 32938626
Alignment:
| Q |
232 |
ccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaa |
331 |
Q |
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|||||||| |||||| |||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||| |
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| T |
32938459 |
ccctcagggagctttcatctcctggcaaaagtggaagcttcttctacttgacccaagatgatagatttatgataaagacggtgaaaaaatccgaagtcaa |
32938558 |
T |
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| Q |
332 |
ggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
399 |
Q |
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| T |
32938559 |
ggtttgtttttggttgttaaattgaaaacatttttccatgtttgttcaaactagtatgacgtacatct |
32938626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 43485771 - 43485622
Alignment:
| Q |
1 |
ccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttgacatgttaacataaaa |
100 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
43485771 |
ccattgccattgaattgagctttagtctcaactgaatcaaatttacactgagctgtgtaattctggattaaggattaaaatttgacatgttaccataaat |
43485672 |
T |
|
| Q |
101 |
tgaagtttgtgtaatccaaatatatactgtaatttgtttcaaattatgta |
150 |
Q |
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| T |
43485671 |
tgaagtttgtgtaagccaaatatatactgtaatttgattcaaattatgta |
43485622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 47870681 - 47870624
Alignment:
| Q |
15 |
ttgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaag |
72 |
Q |
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|||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
47870681 |
ttgggctttagtctcaattgaatcaaattttcactgaattatgtaattctggattaag |
47870624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 24524401 - 24524459
Alignment:
| Q |
277 |
acttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaaggtt |
335 |
Q |
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| T |
24524401 |
acttgacccaagatgacagattcatgattaagacagtgaagaaatctgaagtcaaggtt |
24524459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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