View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_high_6 (Length: 395)
Name: NF8686_high_6
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 113 - 368
Target Start/End: Original strand, 23346359 - 23346603
Alignment:
| Q |
113 |
gaattcatgggttctttatagttgaaaaagttgtctcgaagcttagagagccttgacaaagatactattacgttattatcccatacatattattcacaaa |
212 |
Q |
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| T |
23346359 |
gaattcatgggttctttagagttgaaaaagttgtctcgaagcttagagagctttgacaaagatactattacattattat--------------tcataaa |
23346444 |
T |
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| Q |
213 |
cgaaatactcatattaaaatagatatttgaaatcagattcttatgaaatcaaagttgaatccttctcaattagaccaactatcacgtttgatcaa---ta |
309 |
Q |
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| T |
23346445 |
caaaatactcatattaaaatagatatttgaaatcagattcttatgaaatcaaagttgaatccttctcaattagactaactatcacgtttgatcaatatta |
23346544 |
T |
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| Q |
310 |
ttatttttattctattttgctttttaatcaagattctatacaacaataattaatctatc |
368 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
23346545 |
ttattattattctattttgctttttgatcaagattctatacaacaataattaatatatc |
23346603 |
T |
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