View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_1 (Length: 1014)
Name: NF8686_low_1
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 967; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 967; E-Value: 0
Query Start/End: Original strand, 19 - 997
Target Start/End: Original strand, 32844097 - 32845075
Alignment:
| Q |
19 |
caaagtacatatcctaaaaaactatcaatgaagtgcaagctaaaccagttgaaggtggcaggtttctaaggtctaaagagatatgcgaagagggacacgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844097 |
caaagtacatatcctaaaaaactatcaatgaagtgcaagctaaaccagttgaaggtggcaggtttctaaggtctaaagagatatgcgaagagggacacgt |
32844196 |
T |
|
| Q |
119 |
ctttagcaaagttactccagctaggtagtgttcaaccccattcccttatcttgagcttgcttgtgtcacataatactctgaagttgcttttgcaactgtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844197 |
ctttagcaaagttactccagctaggtagtgttcaaccccattcccttatcttgagcttgcttgtgtcacataatactctgaagttgcttttgcaactgtg |
32844296 |
T |
|
| Q |
219 |
cttttatttggtggttagattcgacatttctacatacattttccttctcagccaagagtctcaacctcctcgctccagcatcagctatctcagaattaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32844297 |
cttttatttggtggttagattcgacatttctacatacattttccttctcagccaagagtctcaacctcctcgcttcagcatcagctatctcagaattaca |
32844396 |
T |
|
| Q |
319 |
cgagttccttttgttgcttttaaaatccatgaaagaggacctcagctgaaaaccagaaacagaaccactttcaaacaattaacaatccaccagattgatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844397 |
cgagttccttttgttgcttttaaaatccatgaaagaggacctcagctgaaaaccagaaacagaaccactttcaaacaattaacaatccaccagattgatc |
32844496 |
T |
|
| Q |
419 |
ataatctaacattgttactattaatttcatacaaattgatagctaggaatgctgaaccatgatcaaaagaagcacatatatagcataccataaacataca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844497 |
ataatctaacattgttactattaatttcatacaaattgatagctaggaatgctgaaccatgatcaaaagaagcacatatatagcataccataaacataca |
32844596 |
T |
|
| Q |
519 |
tgtcaatttctgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaatagtataagaaacaccggcacataaatggacaa |
618 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844597 |
tgtcaatatctgttttactttcaaattttaatcatgactttgtacaaaaacacccggctgctataaatagtataagaaacaccggcacataaatggacaa |
32844696 |
T |
|
| Q |
619 |
cagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacga |
718 |
Q |
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| T |
32844697 |
cagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttatatacacga |
32844796 |
T |
|
| Q |
719 |
caatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctgg |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844797 |
caatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctaggtgcctgg |
32844896 |
T |
|
| Q |
819 |
aagcttgaaaagcatgattattggaagtttaacttaatttttaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaaca |
918 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844897 |
aagcttgaaaagcatgattattggaagtttaacttaattttgaaagcataaataaatggacacatgattaagaatttaataatataaacaaaatgaaaca |
32844996 |
T |
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| Q |
919 |
gaaaaattgtatgaagttgatgattttacagttacctcattgactgcattcctcaaactctgaacttcaaattcacatt |
997 |
Q |
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| T |
32844997 |
gaaaaattgtatgaagttgatgattttacagttacctcattgactgcattcctcaaactctgaacttcaaattcacatt |
32845075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 1975122 - 1975052
Alignment:
| Q |
59 |
taaaccagttgaaggtggcaggtttctaaggtctaaagagatatgcgaagagggacacgtctttagcaaag |
129 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| ||||| ||||| |||||| || | ||||||||||||| |
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| T |
1975122 |
taaacctgttgaaggtggtaggtttctaaggtcgaaagaaatatgtgaagagagagatgtctttagcaaag |
1975052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 4804096 - 4804166
Alignment:
| Q |
19 |
caaagtacatatcctaaaaaactatcaatgaagtgcaagctaaaccagttgaaggtggcaggtttctaagg |
89 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| || ||||||||| |
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| T |
4804096 |
caaagtacatatcccaaaaaactatcaatgaagagcaagctaaacctgttgaaggtggtagatttctaagg |
4804166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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