View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_12 (Length: 391)
Name: NF8686_low_12
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 7559225 - 7558880
Alignment:
| Q |
16 |
acatcacacaatagacagaagataacgaggcaatagatagaacaaggatgagttaagaggagaaatgaaagagatcttagatatttaagactcgatactt |
115 |
Q |
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| T |
7559225 |
acataacacaatagacagaagataacgaggcaatagatagaacaaggatgagttaagaggagaaatgaaagagatcttagatatttaagactcgatactt |
7559126 |
T |
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| Q |
116 |
attagatacccccattaggacactagagaacttgtatgcagggccccacagccattatcatcaaatctaacatcatgccaatttggcaagttgcaaatac |
215 |
Q |
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| T |
7559125 |
attagatacccccattaggacactagagaacttgtatgcagggccccacagccattatcatcaaatctaacatcatgccaatttggcaagttgcagatac |
7559026 |
T |
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| Q |
216 |
ttatagcacgggtatcattctggatgggaaataagatctctttttggtgtgatccctagtttgaaggaggtggcatgtcttgtgttagaataatttattt |
315 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7559025 |
ttataacacgggt---attctggatgggaaataagatctctttttggtgtgatccttagtttgaaggaggtggcatgtcttgtgttagaataatttattt |
7558929 |
T |
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| Q |
316 |
ttaatataagtttatttgacttcttaagaaaataagttaacacttaaaa |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7558928 |
ttaatataagtttatttgacttcttaagaaaataagttaacacttaaaa |
7558880 |
T |
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