View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8686_low_13 (Length: 327)

Name: NF8686_low_13
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8686_low_13
NF8686_low_13
[»] chr5 (18 HSPs)
chr5 (10-317)||(26072536-26072843)
chr5 (15-306)||(27166152-27166444)
chr5 (15-308)||(18089959-18090254)
chr5 (15-281)||(32228452-32228719)
chr5 (15-200)||(17106569-17106754)
chr5 (15-281)||(33169306-33169573)
chr5 (17-85)||(18148160-18148228)
chr5 (15-135)||(18359462-18359582)
chr5 (16-76)||(24407602-24407662)
chr5 (166-282)||(33385598-33385714)
chr5 (17-62)||(8300627-8300672)
chr5 (166-283)||(25857647-25857764)
chr5 (20-65)||(27766696-27766741)
chr5 (17-65)||(10774101-10774149)
chr5 (15-85)||(42927779-42927849)
chr5 (166-251)||(27766843-27766928)
chr5 (24-65)||(33385816-33385857)
chr5 (15-83)||(8941832-8941900)
[»] chr3 (23 HSPs)
chr3 (10-308)||(17098074-17098373)
chr3 (15-242)||(15312230-15312459)
chr3 (15-242)||(16178596-16178824)
chr3 (15-214)||(50651640-50651840)
chr3 (15-308)||(963361-963655)
chr3 (15-281)||(3140500-3140767)
chr3 (168-282)||(29523969-29524083)
chr3 (166-282)||(12342449-12342565)
chr3 (166-282)||(36801299-36801415)
chr3 (15-65)||(11310641-11310691)
chr3 (17-65)||(11203469-11203517)
chr3 (166-282)||(33496347-33496463)
chr3 (166-308)||(7031215-7031357)
chr3 (15-65)||(19890326-19890376)
chr3 (15-65)||(48570481-48570531)
chr3 (17-62)||(7031462-7031507)
chr3 (20-65)||(29524187-29524232)
chr3 (17-65)||(33496197-33496245)
chr3 (20-74)||(12342660-12342714)
chr3 (23-65)||(30695785-30695827)
chr3 (23-65)||(36801517-36801559)
chr3 (19-65)||(53184979-53185025)
chr3 (181-282)||(26771213-26771314)
[»] chr2 (20 HSPs)
chr2 (17-173)||(15391793-15391950)
chr2 (10-308)||(15917296-15917596)
chr2 (15-144)||(42563113-42563243)
chr2 (15-65)||(12645184-12645234)
chr2 (15-65)||(40176318-40176368)
chr2 (15-65)||(44473006-44473056)
chr2 (169-282)||(11000174-11000287)
chr2 (16-81)||(28252370-28252435)
chr2 (15-63)||(3400632-3400680)
chr2 (17-65)||(33516226-33516274)
chr2 (195-282)||(42563267-42563354)
chr2 (15-78)||(44023010-44023073)
chr2 (23-63)||(13059580-13059620)
chr2 (15-135)||(38604745-38604865)
chr2 (15-81)||(17765388-17765454)
chr2 (17-62)||(11000395-11000440)
chr2 (17-62)||(14439403-14439448)
chr2 (21-57)||(16241529-16241565)
chr2 (21-57)||(17569007-17569043)
chr2 (23-63)||(36930841-36930881)
[»] scaffold0161 (1 HSPs)
scaffold0161 (15-225)||(6290-6501)
[»] chr6 (22 HSPs)
chr6 (15-310)||(18682701-18682998)
chr6 (17-308)||(17330621-17330904)
chr6 (16-102)||(12429037-12429123)
chr6 (15-308)||(20883231-20883522)
chr6 (15-214)||(13937348-13937548)
chr6 (166-282)||(21630333-21630449)
chr6 (166-282)||(15959037-15959154)
chr6 (166-282)||(17606558-17606674)
chr6 (15-65)||(11462063-11462113)
chr6 (15-69)||(14373429-14373483)
chr6 (166-308)||(17579279-17579421)
chr6 (166-247)||(215203-215284)
chr6 (20-65)||(10929746-10929791)
chr6 (20-65)||(17606776-17606821)
chr6 (168-308)||(17573853-17573993)
chr6 (15-74)||(15959247-15959306)
chr6 (23-65)||(215059-215101)
chr6 (169-223)||(12427970-12428024)
chr6 (15-85)||(24767846-24767916)
chr6 (15-81)||(32536543-32536609)
chr6 (15-65)||(33185084-33185134)
chr6 (181-262)||(11462228-11462309)
[»] chr4 (19 HSPs)
chr4 (15-308)||(48242027-48242319)
chr4 (15-308)||(19740238-19740532)
chr4 (15-242)||(5790356-5790580)
chr4 (15-308)||(46145323-46145617)
chr4 (166-282)||(4548443-4548559)
chr4 (15-65)||(55726035-55726085)
chr4 (166-282)||(8360900-8361016)
chr4 (15-65)||(5148309-5148359)
chr4 (181-310)||(7403728-7403857)
chr4 (20-308)||(20002371-20002660)
chr4 (15-135)||(17402058-17402178)
chr4 (15-74)||(11587631-11587690)
chr4 (15-65)||(36223531-36223581)
chr4 (15-65)||(54483601-54483651)
chr4 (20-65)||(12697466-12697511)
chr4 (166-282)||(12697613-12697729)
chr4 (15-78)||(2822466-2822529)
chr4 (17-65)||(8360750-8360798)
chr4 (21-57)||(14137328-14137364)
[»] chr1 (15 HSPs)
chr1 (15-315)||(2490860-2491161)
chr1 (15-222)||(4646342-4646550)
chr1 (15-135)||(6478167-6478292)
chr1 (17-65)||(28351376-28351424)
chr1 (15-65)||(37192369-37192419)
chr1 (15-81)||(47623491-47623557)
chr1 (166-282)||(43388167-43388283)
chr1 (17-62)||(16918254-16918299)
chr1 (17-66)||(23635163-23635212)
chr1 (15-59)||(37297947-37297991)
chr1 (166-221)||(23635008-23635063)
chr1 (17-66)||(23713832-23713881)
chr1 (24-65)||(43388024-43388065)
chr1 (168-308)||(16918007-16918147)
chr1 (23-63)||(30713323-30713363)
[»] chr8 (21 HSPs)
chr8 (17-213)||(12257740-12257941)
chr8 (17-213)||(12265132-12265333)
chr8 (15-65)||(2529534-2529584)
chr8 (166-282)||(37433932-37434048)
chr8 (15-78)||(25090035-25090098)
chr8 (15-65)||(13199771-13199821)
chr8 (169-308)||(2170143-2170282)
chr8 (15-69)||(34137401-34137455)
chr8 (17-62)||(2169990-2170035)
chr8 (17-62)||(20823946-20823991)
chr8 (169-282)||(34137187-34137300)
chr8 (23-63)||(136574-136614)
chr8 (170-282)||(17699286-17699398)
chr8 (23-63)||(18309362-18309402)
chr8 (17-308)||(43270100-43270392)
chr8 (229-308)||(5181533-5181612)
chr8 (166-308)||(20824096-20824238)
chr8 (23-65)||(37433788-37433830)
chr8 (15-83)||(5181317-5181385)
chr8 (25-65)||(17699140-17699180)
chr8 (23-63)||(25890718-25890758)
[»] chr7 (5 HSPs)
chr7 (10-80)||(48394547-48394617)
chr7 (15-308)||(37254406-37254700)
chr7 (166-313)||(18530310-18530457)
chr7 (15-65)||(25619107-25619157)
chr7 (17-62)||(18530160-18530205)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 26072536 - 26072843
Alignment:
Q  10 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  ||||| ||||||||||  || ||||||||    
T  26072536 gacaacattactagctttcaaccaccacaaggaataagattttactttatctaacattttcggtagggaattttgtttgttcctgaatgacttgtcgttc 26072635  T
Q  110 cgatcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaat 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  26072636 cgatcattcgacaaaatccaaacacacaggagccatataaggtgaaaaaacga-tgccgcgatttcaaaccgcctgcataatgaataaattgcaagaaat 26072734  T
Q  209 ggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26072735 ggtctgaaataacctgagattcgaccccttcaacaccgagccatgaccacaccaatggccacaacgcaccaaaagaaggacaagacagaaacagatgatt 26072834  T
Q  309 gatgtccat 317  Q
    |||||||||    
T  26072835 gatgtccat 26072843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 27166444 - 27166152
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| ||||||||||  |||||| || |||||||  ||  | ||    
T  27166444 cattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacctgttattttgttc 27166345  T
Q  115 attcgacaaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| | |||||||| |||||||||||| ||||||||||| ||  | |||||||| | ||| |||||||||| |  ||||||||| || || |||    
T  27166344 attccacaatacccaaacacaaaggagccatatcaggtgaaaaaatgatcgtcgcgattttataccacctgcataattactaaattgcaagaagtgatct 27166245  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatga 306  Q
    |||||||||||| | || |||||||||| |||||| |||| || || |||  |||||||||| || ||||  ||| |||||||||||| ||||    
T  27166244 gaaataacctgagagtccaccccttcaaaaccaagtcatgcccgcatcaactgccacaacgcgccgaaagttggacaagacagaaacaaatga 27166152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 18090254 - 18089959
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||| || || |||||||| ||| |||||||| ||||    
T  18090254 cattaccagccttcaaccaccacaatgaataggattttactttatctaacatatgcggtaaagagctatgagtattcctgaataacttgtcgttctgatc 18090155  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtg-aaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtc 212  Q
     ||| |||||| ||||||||| |  ||||| ||  | || |||||||||| |||||||||| | | | ||||||||||||| ||||||||| || ||||     
T  18090154 tttccacaaaacccaaacacacaaaagccaaatctgatgaaaaaaacgaacgccgcgatttaagatcacctgcataatgaataaattgcaagaagtggta 18090055  T
Q  213 tgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    |||||||||||||   ||  |||| |||||||| |||||   ||  ||||| ||||||||||| ||||||   ||  |||||| ||||||||||||    
T  18090054 tgaaataacctgactctccgccccctcaacaccgagccaatccctaaccaaaggccacaacgctccaaaaaccgggcaagacaaaaacagatgatt 18089959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 32228452 - 32228719
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||| | || ||||| |   | || ||||| ||    
T  32228452 cattactagctttcaaccaccacaaaaaatatgattttactttatctaacatatgcggtagagagctttgtttatttctgaaaactttatcattccgctc 32228551  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    | || |||||||||||||||| |||||||| || || || ||||| ||| | |||| | ||||||  |||||||||| || ||||||||| ||||| |||    
T  32228552 agtccacaaaatccaaacacacaggagccaaattagatggaaaaaggaacgtcgcgctctcaaacaacctgcataattaataaattgcaagaaatgatct 32228651  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaa 281  Q
    |  |||| ||||   | || |||  ||||||| ||||| |  | |||||| |||||||||||||||||    
T  32228652 gttataaactgagtcttgatcccaacaacacctagccaagctcgcaccaacggccacaacgcaccaaa 32228719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 17106754 - 17106569
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||| ||||||||||||||||  |||| ||||| ||||||||||||| ||| |||||||| |||||| | || || || |||||||| || ||||     
T  17106754 cattactatctttcaaccaccacaacaaataggatttaactttatctaacagttgtggtagagaactttgtttatttctaaataacctgtcattgcgatt 17106655  T
Q  115 attcgacaaaatccaaacacaaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattg 200  Q
    |||| | | |||||||||||||||||| | |||||||||||||| ||   |||||||| |||||| || |||||||||| ||||||    
T  17106654 attccaaataatccaaacacaaggagctaaataaggtgaaaaaatgatctccgcgattgcaaaccaccagcataatgaataaattg 17106569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 33169306 - 33169573
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||  ||||||| |||||| | | | || | ||| |  || || ||||| ||    
T  33169306 cattactagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaagagctatatttatttcggaaaactctatcattccgctc 33169405  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| || ||||| || || || ||||| ||| |||| | | ||| ||| |||||||||| || |||||||| ||||||||||    
T  33169406 attccacaatatccaaacacacagaagccaaattagatggaaaaaggaacgccgtgctctcataccacctgcataattaataaattgcagaaaatggtct 33169505  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaa 281  Q
    |  || | ||||  |||||| ||  ||||||||||||| |  | |||||  |||||||||||| ||||    
T  33169506 gttatgaactgagtttcgactccaacaacaccaagccaagctcgcaccatcggccacaacgcatcaaa 33169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 18148228 - 18148160
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 85  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||| || || | ||||||||||    
T  18148228 ttactagctttcaaccaccacaaagagtatgattttactttatctaacatatgtggaatagagctttgt 18148160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 18359582 - 18359462
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||| | ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| ||||| ||    
T  18359582 cattactagctttcaaccaccacaaagtatgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattccgttc 18359483  T
Q  115 attcgacaaaatccaaacaca 135  Q
    |||| | |||| |||||||||    
T  18359482 attccataaaacccaaacaca 18359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 24407602 - 24407662
Alignment:
Q  16 attactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtaga 76  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||  |||||||||    
T  24407602 attactagctctcatccactacaaggaataagattttactttatctaacaaatgcggtaga 24407662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 33385714 - 33385598
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || ||| |||||| || |||||||| |||||| ||||| ||| | ||| | || || | ||| ||||||||||| | ||||||||| |    
T  33385714 cgcgatttcaagccacctacataatcaataaattgcacaaaatgatctgagatagcatgagaatctactcattcgacaccaagccaagcccacaccaaag 33385615  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  33385614 gccacaatgcaccaaaa 33385598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 8300672 - 8300627
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  8300672 ttactagctttcaaccaccacaaggtatttgattttactttatcta 8300627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 283
Target Start/End: Complemental strand, 25857764 - 25857647
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  25857764 cgcgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 25857665  T
Q  266 gccacaacgcaccaaaag 283  Q
    ||||||| ||||||||||    
T  25857664 gccacaaggcaccaaaag 25857647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 27766696 - 27766741
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  27766696 ctagctttcaaccaccacaaggtattcgattttactttatctaaca 27766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10774101 - 10774149
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||| ||||||||||||||||||| ||  |||||||||||||||||||    
T  10774101 ttactggctttcaaccaccacaaggtatttgattttactttatctaaca 10774149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 42927779 - 42927849
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 85  Q
    |||||| |||||| ||||||||||| ||| | ||||| |||||||||| |||||| || | ||||||||||    
T  42927779 cattacgagcttttaaccaccacaaagaagatgatttaactttatctagcatttgtggcaaagagctttgt 42927849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 27766843 - 27766928
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagcca 251  Q
    |||||||||||| | |||||||| | || |||||||| | |||| |||||||||   ||| | ||||||||||| |||||||||||    
T  27766843 cgcgatttcaaaacacctgcatattcaataaattgcacacaatgatctgaaatagtatgagaatcgaccccttcgacaccaagcca 27766928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 33385857 - 33385816
Alignment:
Q  24 ctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  33385857 ctttcaaccaccacaaggtatttgattttactttatctaaca 33385816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 8941900 - 8941832
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagcttt 83  Q
    ||||||||||||||| ||||||||||| | | ||||||| ||||| ||| |  ||||||| ||||||||    
T  8941900 cattactagctttcagccaccacaaggtacatgattttaatttatgtaataaatgcggtaaagagcttt 8941832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 17098373 - 17098074
Alignment:
Q  10 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 109  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||| | |||||||| |||||||| |||    
T  17098373 gacatctttactagatttcaaccaccacaaggaatatgattttacttcatctaacatatgcggtagagatctttgtttattcctgaataacctgtcattc 17098274  T
Q  110 cgatcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaat 208  Q
    ||||||||| |||||| ||||||||| ||| |||||||||||| |||||||||   | | ||||||||||| ||||| ||||||| ||||||||| ||||    
T  17098273 cgatcattccacaaaacccaaacacataggggccatataaggtcaaaaaacgatatctgtgatttcaaaccacctgcgtaatgaataaattgcaagaaat 17098174  T
Q  209 ggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||  |  |||||| | |||||||||||||||||| ||| |||| ||||||||||||||    
T  17098173 ggtctgaaataacttgagattcgaccccttcaacaccgagccatatctgcaccaacgaccacaacgcaccaaaagatggacaagatagaaacagatgatt 17098074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 15312230 - 15312459
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |  ||||| ||||||||  | ||||| || ||| || | ||||||||    
T  15312230 cattactagctttcaaccaccacaaggaatatgattttagtttatctaacatatatggtagtgagctttgcttattcctaaataacttg-cattccgatc 15312328  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatg----ccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatg 209  Q
    |||| |||||| ||||||||| ||||||| |||||||||||||||  ||||    ||||||||||||||| | ||||||||||| ||||||| | |||||    
T  15312329 attccacaaaacccaaacacataggagccttataaggtgaaaaaa--aatgatctccgcgatttcaaaccacatgcataatgaataaattgcgagaaatg 15312426  T
Q  210 gtctgaaataacctgatattcgaccccttcaac 242  Q
    |||||||||||||||| ||||||||||||||||    
T  15312427 gtctgaaataacctgagattcgaccccttcaac 15312459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 16178596 - 16178824
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||| |||||  |||| ||||||| ||||||| | ||| ||||||||||| ||||||| || |||||||| ||||||||    
T  16178596 cattactagctttcaaccaccacaatgaatagaatttaactttatataacattagtggttgagagctttgtttgttcctaaataacctgtcattccgatc 16178695  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| | | |||||||||||| |||||||| |||| ||||||||| ||   || |||||||||||| || | |||||| | ||||||| | |||||||||    
T  16178696 attccaaataatccaaacacataggagccaaataaagtgaaaaaatgatatccacgatttcaaaccaccagtataatggataaattgcgagaaatggtct 16178795  T
Q  214 gaaataacctgatattcgaccccttcaac 242  Q
    || ||||| ||| |||| |||||||||||    
T  16178796 gagataacttgagattcaaccccttcaac 16178824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 50651840 - 50651640
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||| ||| || ||  | || ||||| |  || || ||||| ||    
T  50651840 cattactagctttcaaccaccacaaggaataagattttactttacctaacaaatgtggtaaagaactatgattattactgaaaacgctatcattccgctc 50651741  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| || ||||| || || |||||||| ||  | || | | ||||||| |||||||||| || ||| |||||| ||||||||    
T  50651740 attccacaatatccaaacacacagcagccaaattagatgaaaaaaagaccgtcgtgctctcaaaccacctgcataattaataaactgcaaacaatggtct 50651641  T
Q  214 g 214  Q
    |    
T  50651640 g 50651640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 963655 - 963361
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||  ||||||| |||||| | | | ||   ||| |  || || ||||| ||    
T  963655 cattactagctttcatccaccacaaggaacatgattttactttatctaacaaatgcggtaaagagctatatttattttggaaaactctatcattccgctc 963556  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| || ||||| || || || ||||| ||| |||| | | ||| ||| ||| |||||| || |||||||||||||||||||    
T  963555 attccacaatatccaaacacacagaagccaaattagatggaaaaaggaacgccgtgctctcataccacctacataattaataaattgcaaaaaatggtct 963456  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    |  || | ||||  |||||| ||  ||| ||||||||| |  | |||||  |||||||||||| ||||  | ||| |||||| ||| ||||||||    
T  963455 gttatgaactgagtttcgactccaacaagaccaagccaagctcgcaccatcggccacaacgcatcaaagtacggacaagacaaaaatagatgatt 963361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 3140500 - 3140767
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||||||||||  ||| ||||| || | |||||||||||||||||||  ||||||| |||||||| | | || | ||| |  || || ||||| ||    
T  3140500 cattactagctttcagtcacgacaagaaacatgattttactttatctaacaaatgcggtaaagagctttatttatttcggaaaactctatcattccgctc 3140599  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| || ||||| || || || ||||| ||| |  | | | ||||| | |||||||||| || |||||||||||||||||||    
T  3140600 attccacaatatccaaacacacagaagccaaattagttggaaaaaagaacgttgtgctctcaaatcacctgcataattaataaattgcaaaaaatggtct 3140699  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaa 281  Q
       || | ||||  |||||||||  ||||||||||||| |  | |||||  |||||||||||||||||    
T  3140700 tttatgaactgagtttcgaccccaacaacaccaagccaagctcgcaccatcggccacaacgcaccaaa 3140767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 29524083 - 29523969
Alignment:
Q  168 cgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggc 267  Q
    |||||||||||| |||||||| | || |||||||| |||||| ||||| |||   ||| | ||||||||||| ||||||||||| | ||||||||| |||    
T  29524083 cgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatattatgagaatcgaccccttcgacaccaagccaagcccacaccaaaggc 29523984  T
Q  268 cacaacgcaccaaaa 282  Q
    ||||| |||||||||    
T  29523983 cacaatgcaccaaaa 29523969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 12342565 - 12342449
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| |||||||| | || |||||||| |||||| ||||| |||   ||| | |||||| |||| ||||||||||| | || |||||| |    
T  12342565 cgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagtatgagaatcgacctcttcgacaccaagccaagcccgcaccaaag 12342466  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  12342465 gccacaatgcaccaaaa 12342449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 36801415 - 36801299
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||| |    
T  36801415 cgcgatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaag 36801316  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  36801315 gccacaatgcaccaaaa 36801299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 11310691 - 11310641
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  11310691 cattgctagctttcaaccaccacaaggtatgagattttactttatctaaca 11310641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11203469 - 11203517
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  11203469 ttactagctttcaaccaccacaaggtatttgattttactttatctaaca 11203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 33496347 - 33496463
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||| | |||||||| | || |||||||| ||||||  |||| ||| | ||| | || |||||||| ||||||||||| | || |||||| |    
T  33496347 cgcgatttcaaatcacctgcatattcaataaattgcacaaaatgagctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaag 33496446  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  33496447 gccacaatgcaccaaaa 33496463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 7031357 - 7031215
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  7031357 cgcgatttcaagccacctgcatattcaataaattgcacaaagtgatctgacatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 7031258  T
Q  266 gccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||| ||||||||||  ||| |||||| ||| | ||||||    
T  7031257 gccacaaagcaccaaaagtcggacaagacaaaaataaatgatt 7031215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 19890326 - 19890376
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  19890326 cattactagctttcaaccaccacaaggtgtgtgattttactttatctaaca 19890376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 48570531 - 48570481
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||| |||||||||||||||||| |||||  |||||||||||||||||||    
T  48570531 cattattagctttcaaccaccacagggaatttgattttactttatctaaca 48570481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 7031507 - 7031462
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  7031507 ttactagctttcaaccaccacaaggtatttgattttactttatcta 7031462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 29524232 - 29524187
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  29524232 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 29524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33496197 - 33496245
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||| |||||||||||||||||| ||  |||||||||||||||||||    
T  33496197 ttactaactttcaaccaccacaaggtatttgattttactttatctaaca 33496245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 12342714 - 12342660
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 74  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||| | ||||||    
T  12342714 ctagctttcaaccactacaaggtatttgattttactttatctaacaatagcggta 12342660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 30695827 - 30695785
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  30695827 gctttcaaccaccacaaggtatttgattttactttatctaaca 30695785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 36801559 - 36801517
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  36801559 gctttcaaccaccacaaggtatttgattttactttatctaaca 36801517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 53185025 - 53184979
Alignment:
Q  19 actagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||||    
T  53185025 actaactttcaaccaccacaaggtatgtgattttactttatctaaca 53184979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 26771314 - 26771213
Alignment:
Q  181 cctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaa 280  Q
    ||||| ||||||| |||||||||||||| ||| ||||||  ||||   || ||||||||||| |||| ||| | || |||||||||||| || |||| ||    
T  26771314 cctgcgtaatgaataaattgcaaaaaattgtccgaaatatgctgaggatcaaccccttcaaccccaaaccaagccctcaccaatggccataaggcactaa 26771215  T
Q  281 aa 282  Q
    ||    
T  26771214 aa 26771213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 15391793 - 15391950
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcat 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  15391793 ttactagctttcaaccaccacaaggaataagatttaactttatctaacaattgcggtagagagctttgtttgttcctaaacaacctgtcgttccgatcat 15391892  T
Q  117 tcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgattt 173  Q
    || |||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  15391893 tccacaaaacccaaacacacaggagccatataaggtgaaaaaacgaacgccccgattt 15391950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 308
Target Start/End: Original strand, 15917296 - 15917596
Alignment:
Q  10 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 109  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| |||||||||| | ||||| || |  ||||| |||    
T  15917296 gacaacattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgtctattcctaaatagtctgtcattc 15917395  T
Q  110 cgatcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcga-tttcaaaccgcctgcataatgaacaaattgcaaaaaa 207  Q
    || |||||| |||||| |||||||||  | || || |  | ||| ||||| ||  | ||||| |||| | || ||||||||||||| |||||||||||||    
T  15917396 cgttcattccacaaaacccaaacacattgaagtcaaaccaagtggaaaaaagatcgtcgcgattttcgagccacctgcataatgaataaattgcaaaaaa 15917495  T
Q  208 tggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgat 307  Q
    |||||||||||| ||||| |  |||||||| ||||||  ||||||| |  |||||||||||||||||| |||||||  ||| |||||| ||||| |||||    
T  15917496 tggtctgaaatagcctgagaaccgacccctacaacactgagccatgcctgcaccaatggccacaacgcgccaaaagttggacaagacaaaaacatatgat 15917595  T
Q  308 t 308  Q
    |    
T  15917596 t 15917596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 42563113 - 42563243
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| | |||||| ||||| | |||||||| |  || || ||||  ||    
T  42563113 cattactagctttcaaccaccacaaggaatatgattttactttatttaacatatgcagaagagagttttgtttattcctgaaaactctatcattcctctc 42563212  T
Q  115 attcgacaaaatccaaacaca-aggagccat 144  Q
    |||| |||||| ||||| ||| |||||||||    
T  42563213 attccacaaaacccaaatacagaggagccat 42563243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 12645184 - 12645234
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||||    
T  12645184 cattactagcttttaaccaccacaaggtatgagattttactttatctaaca 12645234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 40176318 - 40176368
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  40176318 cattactagctttcaaccaccacatggaatttgattttactttatctaaca 40176368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 44473006 - 44473056
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  44473006 cattattagctttcaaccaccacaaagaatatgattttactttatctaaca 44473056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 11000287 - 11000174
Alignment:
Q  169 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 268  Q
    |||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||||| || |||||  ||||    
T  11000287 gatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccatgcccgcaccataggcc 11000188  T
Q  269 acaacgcaccaaaa 282  Q
    |||| |||||||||    
T  11000187 acaatgcaccaaaa 11000174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 28252370 - 28252435
Alignment:
Q  16 attactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 81  Q
    |||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||| ||||||    
T  28252370 attactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggtaaagagct 28252435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 3400632 - 3400680
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  3400632 cattaatagctttcaaccaccacaaggtatatgattttactttatctaa 3400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 33516274 - 33516226
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||    
T  33516274 ttactagctttcaaccaccacatggaatttgattttactttatctaaca 33516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 42563267 - 42563354
Alignment:
Q  195 aaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaa 282  Q
    ||||||||| ||||||||||||||||||||| | ||||||| | | ||||| ||||| | ||  ||||| | ||||||||||||||||    
T  42563267 aaattgcaagaaatggtctgaaataacctgagaatcgacccatactacaccgagccaagcccggaccaacgaccacaacgcaccaaaa 42563354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 44023010 - 44023073
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 78  Q
    |||||||||||||||||||||||| || ||  |||||||||||||||||||  || ||||||||    
T  44023010 cattactagctttcaaccaccacagggtatttgattttactttatctaacaactgtggtagaga 44023073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 13059580 - 13059620
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  13059580 gctttcaaccaccacaaggaataaaactttactttatctaa 13059620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 38604865 - 38604745
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||||||||||||||||||||  |  | ||||||||||| || ||||  || |||| ||||||||||   |||||||| | | |||| ||||| ||    
T  38604865 cattactagctttcaaccaccacaaaaagcatgattttactttttccaacaactgtggtatagagctttgttgattcctgaatagcgtgtcattccgttc 38604766  T
Q  115 attcgacaaaatccaaacaca 135  Q
    |||| |||||| ||| |||||    
T  38604765 attccacaaaacccacacaca 38604745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 17765454 - 17765388
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 81  Q
    ||||||||||||| |||| |||||| ||| | ||||||||||| ||||||| ||| |||| ||||||    
T  17765454 cattactagcttttaacccccacaaagaagatgattttactttgtctaacaattgtggtaaagagct 17765388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 11000440 - 11000395
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||||||||||||||||||||| || | |||||| ||||||||    
T  11000440 ttactagctttcaaccaccacaaggtatgaaattttaatttatcta 11000395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 14439403 - 14439448
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||    
T  14439403 ttactagctttcaaccaccacaaggtttgtgattttactttatcta 14439448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 16241529 - 16241565
Alignment:
Q  21 tagctttcaaccaccacaaggaataagattttacttt 57  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  16241529 tagctttcagccaccacaaggaataagactttacttt 16241565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 17569043 - 17569007
Alignment:
Q  21 tagctttcaaccaccacaaggaataagattttacttt 57  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  17569043 tagctttcaaccaccacaaagaataatattttacttt 17569007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 36930841 - 36930881
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  36930841 gctttcaaccaccacaatgaatagtattttactttatctaa 36930881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 6501 - 6290
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||  | |||||||| ||||||||||||||||     
T  6501 cattactagctttcaaccaccacaatgaataagattttactttatctaacatatgcggtaaagagctatggttattcctgaataacctgtcgttccgata 6402  T
Q  115 attcgacaaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
     ||| |||||| |||||||| ||||| ||| || | |||||| |||||| |||||||||||| | | ||||||||||||| ||||||||| || |||| |    
T  6401 tttccacaaaacccaaacacaaaggacccaaatcaagtgaaagaacgaacgccgcgatttcagatcacctgcataatgaataaattgcaagaagtggttt 6302  T
Q  214 gaaataacctga 225  Q
    ||||||| ||||    
T  6301 gaaataatctga 6290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 18682998 - 18682701
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaac-ctgtcgttccgat 113  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||| |||||||| ||||||||| |||||||||| | | || |  || || |    
T  18682998 cattactcgctttcagccagcacaaggaaaatgattttactttatctaacatatgcggtagcgagctttgtttgttcctgaaaagctctatgatttcgct 18682899  T
Q  114 cattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtc 212  Q
    ||||| |||| | | ||| ||| | ||||||||||||||||||||||||    |||||| ||||||| |||||||||| ||  |||||||| ||||||||    
T  18682898 cattccacaacacctaaatacataagagccatataaggtgaaaaaacgagcatcgcgatctcaaaccacctgcataattaatgaattgcaagaaatggtc 18682799  T
Q  213 tgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgattga 310  Q
    ||||||||||||| ||||||||||  | |  |||||||| |||   ||||| ||||||| |||||||||| | ||| |||||| |||||||| |||||    
T  18682798 tgaaataacctgagattcgaccccaactatgccaagccaagactgaaccaacggccacagcgcaccaaaatacggacaagacaaaaacagataattga 18682701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 17330621 - 17330904
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcat 116  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||| ||| | ||||||         || |||||||| |    
T  17330621 ttactaactttcaaccaccacaaagaatatgattttactttatctaacatatgcgatagagagctatgtttattcctg---------tcattccgatcct 17330711  T
Q  117 tcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctga 215  Q
    || |||||| ||||||||| |||||| | ||||| |||||||||||| |||| ||  ||| | | ||| ||||||||| |||||||||||||||||||||    
T  17330712 tccacaaaacccaaacacacaggagctaaataagatgaaaaaacgaacgccgagaggtcagaacacctacataatgaataaattgcaaaaaatggtctga 17330811  T
Q  216 aataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||||||   |||    || ||||||| ||||||| || || ||| ||||||| |||||||||| |  || |||||| ||||| ||||||    
T  17330812 aataacctgactctcggtgtctgcaacaccgagccatgcccgcatcaaaggccacagcgcaccaaaatactgacaagacaaaaacaaatgatt 17330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 12429123 - 12429037
Alignment:
Q  16 attactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacct 102  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||| || |||| ||||||||||  |||||| || |||||    
T  12429123 attactagctttcaactaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacct 12429037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 20883522 - 20883231
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| |||| ||     
T  20883522 cattactagctttcaaccaccacaaggtatgtgattttactttatctaacaatagtggtatagaactttgacggttccgaaataacctgtcattcc-at- 20883425  T
Q  115 attcgacaaaatccaaacacaagga-gccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
     ||| | |||| ||| |||||  || |||| || |  ||||| || ||  | || |||||||| || |||||||| | || |||||||| ||||||||||    
T  20883424 -ttccataaaacccatacacactgaagccaaatcaaatgaaataaagatcgacgggatttcaagccacctgcatattcaataaattgcacaaaatggtct 20883326  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    || ||| | ||| | || |||||||| ||||||||||||| || |||||  |||||||| ||||| |||   ||| |||||| ||||| ||||||    
T  20883325 gagatagcatgagaatctaccccttcgacaccaagccatgtccgcaccataggccacaatgcaccgaaaattggacaagacaaaaacatatgatt 20883231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 13937348 - 13937548
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||||||||  ||| ||| |||||| | | | ||   ||| |  || || ||||| ||    
T  13937348 cattactagctttcatccaccacaaggaacatgattttactttatctaacaaatgcagtaaagagctatatttattttggaaaactctatcattccgctc 13937447  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| |  ||||| || || || ||||| ||| | || | | ||| ||| |||||||||| || |||||||||||||||||||    
T  13937448 attccacaatatccaaacacacaaaagccaaattagatggaaaaaagaacgtcgtgctctcataccacctgcataattaataaattgcaaaaaatggtct 13937547  T
Q  214 g 214  Q
    |    
T  13937548 g 13937548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 21630449 - 21630333
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||| | |||||||| | || |||||||| | |||| |||||||||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  21630449 cgcgatttcaaaacacctgcatattcaataaattgcacacaatgatctgaaatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 21630350  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  21630349 gccacaaagcaccaaaa 21630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 15959154 - 15959037
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgac-cacaccaat 264  Q
    ||||||||||| |  ||||| ||||||||||||||| |||||||||||||||||  ||||   |  ||||||||||| |||||||| | | | |||||||    
T  15959154 cgcgatttcaagcaacctgcgtaatgaacaaattgcgaaaaatggtctgaaatatgctgaggatgaaccccttcaaccccaagccaagcctctcaccaat 15959055  T
Q  265 ggccacaacgcaccaaaa 282  Q
    ||||| || |||||||||    
T  15959054 ggccataaggcaccaaaa 15959037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 17606674 - 17606558
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  17606674 cgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 17606575  T
Q  266 gccacaacgcaccaaaa 282  Q
     |||||| |||||||||    
T  17606574 accacaatgcaccaaaa 17606558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 11462063 - 11462113
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||| ||||    
T  11462063 cattactagctttcaaccaccacaaggtatgtgattttactttatccaaca 11462113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 14373483 - 14373429
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttg 69  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| |||||||||||    
T  14373483 cattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttg 14373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 17579421 - 17579279
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  17579421 cgcgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 17579322  T
Q  266 gccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||| ||||||||||  ||| |||||| ||| | ||||||    
T  17579321 gccacaaggcaccaaaagtcggacaagacaaaaataaatgatt 17579279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 215203 - 215284
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaa 247  Q
    |||||||||||||| |||||||| | || |||||||| |||||| ||||| ||| | ||| | || ||||||||||||||||    
T  215203 cgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagcatgaaaatctaccccttcaacaccaa 215284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 10929791 - 10929746
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  10929791 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 10929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 17606821 - 17606776
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  17606821 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 17606776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 308
Target Start/End: Complemental strand, 17573993 - 17573853
Alignment:
Q  168 cgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggc 267  Q
    ||||||||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |||    
T  17573993 cgatttcaagccacctgcatattcaataaattgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagaggc 17573894  T
Q  268 cacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||| ||||||||||  ||| |||||| ||| | ||||||    
T  17573893 cacaaggcaccaaaagtcggacaagacaaaaataaatgatt 17573853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 15959306 - 15959247
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 74  Q
    |||||||| |||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||    
T  15959306 cattactaacttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 15959247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 215059 - 215101
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  215059 gctttcaaccaccacaaggtatttgattttactttatctaaca 215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 12428024 - 12427970
Alignment:
Q  169 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacct 223  Q
    ||||||||||| |||||||||| || ||||||||| || || |||||||||||||    
T  12428024 gatttcaaaccacctgcataattaataaattgcaagaagtgatctgaaataacct 12427970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 24767916 - 24767846
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgt 85  Q
    |||||| |||||| ||||||||||| ||| | ||||| |||||||||| |||||| || | ||||||||||    
T  24767916 cattacaagcttttaaccaccacaaagaagatgatttcactttatctagcatttgtggcaaagagctttgt 24767846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 32536543 - 32536609
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 81  Q
    ||||| ||||||| |||||||| || ||| | ||||||||||| ||||||||||| |||| ||||||    
T  32536543 cattaatagcttttaaccaccaaaaagaagatgattttactttgtctaacatttgtggtaaagagct 32536609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 33185084 - 33185134
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||| | ||| || || |||||||||||||    
T  33185084 cattactagctttcaaccaccacaaagcatatgaattcactttatctaaca 33185134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 11462228 - 11462309
Alignment:
Q  181 cctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacacca 262  Q
    |||||||| | || |||||||| |||||| ||||| ||||| ||| | || |||||||| ||||||||||||| || |||||    
T  11462228 cctgcatattcaataaattgcacaaaatgatctgagataacatgagaatctaccccttcgacaccaagccatgcccgcacca 11462309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 48242027 - 48242319
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||| |||||||||| ||||||||||| |||||||||||||||||||| || ||| ||||||||||| ||||| | || ||| |||| ||||||||    
T  48242027 cattactaactttcaaccaacacaaggaatatgattttactttatctaacatatgtggt-gagagctttgtttgttcttaaataacatgtcattccgatc 48242125  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| | | |||||||||||| ||||||||||||||||| ||||| ||     ||| ||| ||||| || |||||||| | ||||||| | |||| ||||    
T  48242126 attccatataatccaaacacataggagccatataaggtg-aaaaatgatatatgcggttttaaaccaccagcataatggataaattgcgagaaattgtct 48242224  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    |||||||||||| |||| ||||||||||| |  ||||| | || ||| || | ||| | ||||||| |||| ||| ||| |||||||||||||||    
T  48242225 gaaataacctgagattcaaccccttcaactctgagccacgcccgcactaacgaccaaagcgcaccataagatggacaagtcagaaacagatgatt 48242319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 19740532 - 19740238
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| | || ||||| |  || || ||||| ||    
T  19740532 cattactagctttcagccaccacaaggaatatgattttactttatctaacatatgcgatagagagctttgtttatttctgaaaactctatcattccgctc 19740433  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||||||||||||||| | |||||| || || |  ||||| |||||  ||| | ||||||| ||| |||||| || |||||| || |||||||||    
T  19740432 attccacaaaatccaaacacacaagagccaaattagatagaaaaaggaatgatgcgctctcaaaccacctacataattaataaattgtaagaaatggtct 19740333  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    |  |||| ||||  |||||||||  | ||||||||||| |  | |||||  | |||||||||||||||  ||||| |||||| ||| ||||||||    
T  19740332 gctataaactgagtttcgaccccaaccacaccaagccaagctcgcaccatcgaccacaacgcaccaaagtaaggacaagacaaaaatagatgatt 19740238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 5790580 - 5790356
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| |||||||| ||| |||||||| |||||| |||||||    ||| |||| ||||||||    
T  5790580 cattactagctttcaaccaccacaacgaataggatttaacttgatctaacagttgtggtagagaactttgtttgttcct----aacatgtcattccgatc 5790485  T
Q  115 attcgacaaaatccaaacac-aaggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| | | |||| |||||| |||||| || |||||||||||||| ||   |||||||| |||||| || |||||||| | ||||||| | |||||||||    
T  5790484 attccaaataatcaaaacacaaaggagtcaaataaggtgaaaaaatgatctccgcgattgcaaaccaccagcataatggataaattgcgagaaatggtct 5790385  T
Q  214 gaaataacctgatattcgaccccttcaac 242  Q
    || ||||||||| ||||  ||||||||||    
T  5790384 gagataacctgagattcagccccttcaac 5790356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 46145323 - 46145617
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||| |||||| ||| || |||||| | |||||||||||||||||||  ||||||| |||||| ||| | || | ||| |  || || ||||| ||    
T  46145323 cattactaactttcatccatcataaggaacatgattttactttatctaacaaatgcggtaaagagctgtgtttatttcagaaaactctatcattccgctc 46145422  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| |  ||||| || || || ||||| ||| |||| | | ||| ||| |||||||||| || |||||||||||||||||||    
T  46145423 attccacaatatccaaacacacataagccaaattagatggaaaaaagaacgccgtgctctcataccacctgcataattaataaattgcaaaaaatggtct 46145522  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    |  || | ||||  |||||||||  ||||||||||||| |  | |||||  ||||||||| || ||||  | ||| |||||| ||| ||||||||    
T  46145523 gttatgaactgagtttcgaccccaacaacaccaagccaagctcgcaccatcggccacaacacatcaaagtacggacaagacaaaaatagatgatt 46145617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 282
Target Start/End: Complemental strand, 4548559 - 4548443
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| |||||||| | || |||||||| |||||| ||||| |||   ||| | ||||||||||| ||||||||||| | ||||||||  |    
T  4548559 cgcgatttcaaaccacctgcatattcaataaattgcacaaaatgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccacaccagag 4548460  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  4548459 gccacaatgcaccaaaa 4548443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 55726085 - 55726035
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  55726085 cattactagctttcaaccaccacaaggtatgagattttactttatctaaca 55726035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 8360900 - 8361016
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| |||||||| | || |||||| | |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||| |    
T  8360900 cgcgatttcaaaccacctgcatattcaataaattgaacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaag 8360999  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  8361000 gccacaatgcaccaaaa 8361016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 5148309 - 5148359
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  5148309 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 5148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 7403728 - 7403857
Alignment:
Q  181 cctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaa 280  Q
    |||||||||| || ||||||||||||||| |||||| |    ||| | ||||||||| | || || ||||||| ||||||||||||||| || |||| ||    
T  7403728 cctgcataattaataaattgcaaaaaatgatctgaagttgattgagagtcgacccctaccactccgagccatgcccacaccaatggccataaggcactaa 7403827  T
Q  281 aagaaggataagacagaaacagatgattga 310  Q
    |||  ||| |||||| ||||| ||||||||    
T  7403828 aagttggacaagacaaaaacaaatgattga 7403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 20002371 - 20002660
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcattcg 119  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||| | | |||| ||| |||||   |||||  || |||||||| ||||| || |||     
T  20002371 ctagctttcaaccaccacaaggtatgtgattttactttatctaacaatagtggtatagaactttgacagttccgaaataacctgtcattccgttccttca 20002470  T
Q  120 acaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaat 218  Q
    | |||| |||||||||  | ||||| || |  ||||| || ||  | ||  ||||||| || ||| |||| | || |||||||| |||||| ||||| ||    
T  20002471 ataaaacccaaacacactgaagccaaatcaaatgaaataaagatcgacggaatttcaagccacctacatattcaataaattgcacaaaatgatctgagat 20002570  T
Q  219 aacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    | | ||| | || ||||||||  || ||||||||| || |||||  |||||||| ||||| ||| | ||| |||||| ||||| ||||||    
T  20002571 agcatgagaatctaccccttcggcatcaagccatgcccgcaccataggccacaatgcaccgaaaaatggacaagacaaaaacatatgatt 20002660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 17402178 - 17402058
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||||| || ||| ||||||| ||| | |||||||||||||||||||| || |||| |||||||| | |||| || || | ||| || ||||| ||    
T  17402178 cattactagcctttaactaccacaaagaagatgattttactttatctaacatatgtggtaaagagctttttctgtttctaaatagcctatcattccgttc 17402079  T
Q  115 attcgacaaaatccaaacaca 135  Q
    |||| ||||||  ||||||||    
T  17402078 attccacaaaactcaaacaca 17402058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 11587690 - 11587631
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggta 74  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||    
T  11587690 cattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggta 11587631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 36223581 - 36223531
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||| | | ||||||||||| |||||||||||||||||||    
T  36223581 cattactagctttcagctatcacaaggaatatgattttactttatctaaca 36223531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 54483651 - 54483601
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||| ||||||||||| ||  |||||||||||||||||||    
T  54483651 cattactagctttcagccaccacaaggtatttgattttactttatctaaca 54483601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 12697466 - 12697511
Alignment:
Q  20 ctagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||    
T  12697466 ctagctttcaaccaccacaaggtatttgattttactttatctaaca 12697511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 12697613 - 12697729
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| |||||||| | || |||||||| ||| || || || |||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  12697613 cgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatcggagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 12697712  T
Q  266 gccacaacgcaccaaaa 282  Q
    |||| || |||||||||    
T  12697713 gccataatgcaccaaaa 12697729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 2822529 - 2822466
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 78  Q
    ||||||||||||||||||||||||  ||||  ||||| |||||||||||||  || ||||||||    
T  2822529 cattactagctttcaaccaccacagagaatttgatttcactttatctaacaactgtggtagaga 2822466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 8360750 - 8360798
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||| |||||||||||||| |||| ||  |||||||||||||||||||    
T  8360750 ttactggctttcaaccaccataaggtatttgattttactttatctaaca 8360798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 14137328 - 14137364
Alignment:
Q  21 tagctttcaaccaccacaaggaataagattttacttt 57  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  14137328 tagctttcaaccaccacaaagaataatattttacttt 14137364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 2490860 - 2491161
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||||  || |||| ||| || ||  | || ||||| |  || || ||||| ||    
T  2490860 cattactaactttcagccaccacagggaataagattttactttatctaacaaatgtggtaaagaactatgattattactgaaaacgctatcattccgctc 2490959  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| |||| ||||||||||| || ||||| || || || ||||| ||  | || | | || |||| |||||||||| || ||| |||||| ||||||||    
T  2490960 attccacaatatccaaacacacagcagccaaattagatggaaaaaagatcgtcgtgctctcgaaccacctgcataattaataaactgcaaacaatggtct 2491059  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgattgatgt 313  Q
    |  || | ||||  ||||||||| |||||||||||||| |  |||||||  |||||||||||||||||  | ||| |||||||||| |||||||||| ||    
T  2491060 gttatgaactgagtttcgaccccatcaacaccaagccaagctcacaccatcggccacaacgcaccaaagtacggacaagacagaaaaagatgattgacgt 2491159  T
Q  314 cc 315  Q
    ||    
T  2491160 cc 2491161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 4646550 - 4646342
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||  ||  ||| ||||||||||   ||||| || ||||| |  || || ||    
T  4646550 cattactagctttcaaccaccacaaagaatatgattttactttatctaacagatgtagtatagagctttgttgattcctaaataacctcttatttcgttc 4646451  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
     ||| |||| | ||||||||| | ||| ||||| || |||||||  ||  |||||||||||| ||| ||| |||||| || ||||||||| || || ||     
T  4646450 gttccacaatacccaaacacacaagagtcatatcagatgaaaaagggatcgccgcgatttcagaccacctacataattaataaattgcaagaagtgatcc 4646351  T
Q  214 gaaataacc 222  Q
    |||||||||    
T  4646350 gaaataacc 4646342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 6478167 - 6478292
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacat-----ttgcggtagagagctttgtgtgttcctgaacaacctgtcgttc 109  Q
    ||||| ||||||| | ||||||||||||||| ||||||||||||||||||||      |||||||||||||||||| | || ||||| |  || || |||    
T  6478167 cattattagcttttagccaccacaaggaatatgattttactttatctaacatatgcgatgcggtagagagctttgtctatttctgaaaactctatcattc 6478266  T
Q  110 cgatcattcgacaaaatccaaacaca 135  Q
    || ||| || ||||||||||||||||    
T  6478267 cgctcagtccacaaaatccaaacaca 6478292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 28351376 - 28351424
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  28351376 ttactagctttcaaccaccacaatgaatatgattttactttatctaaca 28351424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 37192419 - 37192369
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  37192419 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 37192369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 47623557 - 47623491
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagct 81  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||| ||||||    
T  47623557 cattactagcttttaaccaccacaaagaagatgattttactttgtctaacatttgtggtaaagagct 47623491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 43388167 - 43388283
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| |||||||| | || |||||||| ||| || | ||| |||   ||| | ||||||||||| ||||||||||| | || |||||| |    
T  43388167 cgcgatttcaaaccacctgcatattcaataaattgcacaaagtgatatgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccaaag 43388266  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  43388267 gccacaatgcaccaaaa 43388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 16918299 - 16918254
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  16918299 ttactagctttcaaccaccacaaggtatttgattttactttatcta 16918254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 23635212 - 23635163
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacat 66  Q
    ||||| ||||||||||||||||  ||||| ||||||||||||||||||||    
T  23635212 ttactcgctttcaaccaccacagagaatatgattttactttatctaacat 23635163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 37297991 - 37297947
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttat 59  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||    
T  37297991 cattactagctttcaaccaccacaaggtatgtgattttactttat 37297947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 23635063 - 23635008
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataac 221  Q
    |||||||||||||  |||||||||| || ||||||||| ||||| |||||||||||    
T  23635063 cgcgatttcaaactacctgcataattaataaattgcaagaaatgatctgaaataac 23635008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 23713881 - 23713832
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacat 66  Q
    ||||| |||||||||||||| |  ||||| ||||||||||||||||||||    
T  23713881 ttactcgctttcaaccaccatagagaatatgattttactttatctaacat 23713832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 43388024 - 43388065
Alignment:
Q  24 ctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||| ||  |||||||||||||||||||    
T  43388024 ctttcaaccaccacaaggtatttgattttactttatctaaca 43388065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 308
Target Start/End: Complemental strand, 16918147 - 16918007
Alignment:
Q  168 cgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggc 267  Q
    |||| |||| || |||||||| | || |||||||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |||    
T  16918147 cgatgtcaagccacctgcatattcaataaattgcacaaagtgatctgacatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagaggc 16918048  T
Q  268 cacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||| ||||||||||  ||| |||||| ||| | ||||||    
T  16918047 cacaaagcaccaaaagtcggacaagacaaaaataaatgatt 16918007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 30713363 - 30713323
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  30713363 gctttcaaccaccataatgaataatattttactttatctaa 30713323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 12257941 - 12257740
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtc----gttccga 112  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||| | |||||||| |  || ||     |||||     
T  12257941 ttactagctttcaaccaccacatgtaatatgattttactttatctaacatatgcgatagtgagctttgtttattcctgaaaactctatcattaattccgc 12257842  T
Q  113 tcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggt 211  Q
    |||||| |||| | ||||||||| | ||||||||||||||||||||||||  |  ||||| ||||||| |||| ||||| ||  |||||||| |||||||    
T  12257841 tcattccacaacacccaaacacataagagccatataaggtgaaaaaacgagcgttgcgatctcaaaccacctgaataattaatgaattgcaagaaatggt 12257742  T
Q  212 ct 213  Q
    ||    
T  12257741 ct 12257740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 12265333 - 12265132
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtc----gttccga 112  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||| |||| ||| ||||||||| | |||||||| |  || ||     |||||     
T  12265333 ttactagctttcaaccaccacatgtaatatgattttactttatctaacatatgcgatagtgagctttgtttattcctgaaaactctatcattaattccgc 12265234  T
Q  113 tcattcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggt 211  Q
    |||||| |||| | ||||||||| | ||||||||||||||||||||||||  |  ||||| ||||||| |||| ||||| ||  |||||||| |||||||    
T  12265233 tcattccacaacacccaaacacataagagccatataaggtgaaaaaacgagcgttgcgatctcaaaccacctgaataattaatgaattgcaagaaatggt 12265134  T
Q  212 ct 213  Q
    ||    
T  12265133 ct 12265132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 2529534 - 2529584
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2529534 cattactagctttcaaccaccacaaggtatgagattttactttatctaaca 2529584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 37433932 - 37434048
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    |||||||||||||| || ||||| | || |||||||| |||||| ||||| ||| | ||| | ||||||||||| |||| |||||| | || |||||| |    
T  37433932 cgcgatttcaaaccacccgcatattcaataaattgcacaaaatgatctgagatagcatgagaatcgaccccttcgacacaaagccaagcccgcaccaaag 37434031  T
Q  266 gccacaacgcaccaaaa 282  Q
    ||||||| |||||||||    
T  37434032 gccacaatgcaccaaaa 37434048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 25090035 - 25090098
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagaga 78  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||  || ||||||||    
T  25090035 cattactagctttcagccaccacaaggaatttgattttactttatctaacaactgtggtagaga 25090098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 13199771 - 13199821
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  13199771 cattactagctttcgaccaccacaaggtatgagattttactttatctaaca 13199821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 2170143 - 2170282
Alignment:
Q  169 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 268  Q
    |||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||  ||||    
T  2170143 gatttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccataggcc 2170242  T
Q  269 acaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    |||| |||||||||   ||| |||||| ||||| ||||||    
T  2170243 acaatgcaccaaaaattggacaagacaaaaacaaatgatt 2170282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 34137455 - 34137401
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttg 69  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||| |||||||||||    
T  34137455 cattactagcttttaaccaccacaatgaagatgattttactttgtctaacatttg 34137401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 2169990 - 2170035
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  2169990 ttactagctttcaaccaccacaaggtatgtgattttactttatcta 2170035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 20823946 - 20823991
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  20823946 ttactagctttcaaccaccacaaggtatttgattttactttatcta 20823991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 34137300 - 34137187
Alignment:
Q  169 gatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcc 268  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||  |||||  ||||   || ||  ||||||| || |||||   || |||||||||||    
T  34137300 gatttcaaacaacctgcataatgaataaattgcaaaaaatggtccaaaatatgctgagggtcaacagcttcaacccctagccactccctcaccaatggcc 34137201  T
Q  269 acaacgcaccaaaa 282  Q
    |||| |||||||||    
T  34137200 acaaggcaccaaaa 34137187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 136574 - 136614
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  136574 gctttcaaccaccacaaggaataaaactttactttatctaa 136614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 17699286 - 17699398
Alignment:
Q  170 atttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggcca 269  Q
    ||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||| || ||    
T  17699286 atttcaagccacctgcatattcaataaattgcacaaaatgatctgagatagcatgagaatctaccccttcgacaccaagccaagcccgcaccaaaggtca 17699385  T
Q  270 caacgcaccaaaa 282  Q
    ||| |||||||||    
T  17699386 caatgcaccaaaa 17699398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 18309402 - 18309362
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  18309402 gctttcaaccaccacaaggaataaaactttactttatctaa 18309362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 43270100 - 43270392
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatcat 116  Q
    |||||||||||||| |||||||||| ||  |||||||||||||||| || | | |||| ||| |||||   ||||   || ||| |||| ||||| ||||    
T  43270100 ttactagctttcaaacaccacaaggtatgtgattttactttatctagcaatagtggtatagaactttgacggttctgaaataacatgtcattccgttcat 43270199  T
Q  117 tcgacaaaatccaaacacaagga-gccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctga 215  Q
    || | || | | |||||||  || |||| || |  ||||| || ||| | || |||||||| || |||||||| | || |||||||| |||||| |||||    
T  43270200 tccataacaccgaaacacactgaagccaaattaaatgaaataaggaacgacgagatttcaagccacctgcatattcaataaattgcacaaaatgatctga 43270299  T
Q  216 aataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
     ||| | ||| | || |||||||| ||||||||||| | || |||||  | |||||| |||||||||   ||| |||||| ||||| ||||||    
T  43270300 gatagcatgagaatctaccccttcgacaccaagccaagcccgcaccatagaccacaatgcaccaaaaattggacaagacaaaaacaaatgatt 43270392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 5181533 - 5181612
Alignment:
Q  229 tcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||||| | ||||| ||||||| | |||||||||||||||| ||||||||||  ||  |||||| ||||| ||||||    
T  5181533 tcgacccctaccacaccgagccatgcctacaccaatggccacaaggcaccaaaagttgggcaagacaaaaacatatgatt 5181612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 308
Target Start/End: Original strand, 20824096 - 20824238
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || |||||||| | || |||| ||| ||| || ||||| |||   ||| | ||||||||||| ||||||||||| | || |||||  |    
T  20824096 cgcgatttcaagccacctgcatattcaataaatcgcacaaagtgatctgagatagtatgagaatcgaccccttcgacaccaagccaagcccgcaccagag 20824195  T
Q  266 gccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    ||||||| ||||||||||  ||| |||||| ||| | ||||||    
T  20824196 gccacaaagcaccaaaagtcggacaagacaaaaataaatgatt 20824238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 37433788 - 37433830
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  37433788 gctttcaaccaccacaaggtatttgattttactttatctaaca 37433830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 5181317 - 5181385
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagcttt 83  Q
    |||||||| |||| |||||||||||  || | |||||||||||||||||||| || |||| ||| ||||    
T  5181317 cattactaacttttaaccaccacaaataagatgattttactttatctaacatatgtggtaaagaacttt 5181385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17699140 - 17699180
Alignment:
Q  25 tttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  17699140 tttcaaccaccacaaggtatttgattttactttatctaaca 17699180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 25890718 - 25890758
Alignment:
Q  23 gctttcaaccaccacaaggaataagattttactttatctaa 63  Q
    ||||||||||||||||| |||||| | ||||||||||||||    
T  25890718 gctttcaaccaccacaaagaataaaactttactttatctaa 25890758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 48394547 - 48394617
Alignment:
Q  10 gacatcattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagc 80  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||    
T  48394547 gacaacattactagctttcaaccaccacaaggaatatgattttattttatctaacatatgcggtagagagc 48394617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 37254406 - 37254700
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaacatttgcggtagagagctttgtgtgttcctgaacaacctgtcgttccgatc 114  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||| |||| ||| |||||   |||||  || |||||| | ||||  ||    
T  37254406 cattactagctttcaaccaccacaaggtatgtgattttactttatctaacaattgtggtatagaactttgacagttccgaaataacctgccattccattc 37254505  T
Q  115 attcgacaaaatccaaacaca-aggagccatataaggtgaaaaaacgaatgccgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtct 213  Q
    |||| | |||| |||||||||  | ||||| ||||  ||||| || ||  | || |||| ||| || |||||||| | || |||||||| |||||| |||    
T  37254506 attccataaaacccaaacacactgaagccaaataaaatgaaataaagatcgacgggattccaagccacctgcatattcaataaattgcacaaaatgatct 37254605  T
Q  214 gaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatggccacaacgcaccaaaagaaggataagacagaaacagatgatt 308  Q
    || ||| | ||| | |  |||||||| ||||||||||||| || |||||  |||||||| ||||| |||   ||| |||||| ||||| ||||||    
T  37254606 gagatagcatgagaatttaccccttcgacaccaagccatgcccgcaccataggccacaatgcaccgaaaattggacaagacaaaaacatatgatt 37254700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 18530310 - 18530457
Alignment:
Q  166 cgcgatttcaaaccgcctgcataatgaacaaattgcaaaaaatggtctgaaataacctgatattcgaccccttcaacaccaagccatgaccacaccaatg 265  Q
    ||||||||||| || |||||||| | || |||||||| |||||| ||||| ||| | ||| | || |||||||| ||||||||||| | || |||||  |    
T  18530310 cgcgatttcaagccacctgcatattcaataaattgcacaaaatgatctgatatagcatgagaatctaccccttcgacaccaagccaagcccgcaccatag 18530409  T
Q  266 gccacaacgcaccaaaagaaggataagacagaaacagatgattgatgt 313  Q
    ||||||| |||||||||   ||| |||||| ||||| |||||| ||||    
T  18530410 gccacaatgcaccaaaaattggacaagacaaaaacaaatgattcatgt 18530457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 25619107 - 25619157
Alignment:
Q  15 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 65  Q
    |||||||||||||||||||||| |||| ||  |||||||||||||||||||    
T  25619107 cattactagctttcaaccaccataaggtatgtgattttactttatctaaca 25619157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 18530160 - 18530205
Alignment:
Q  17 ttactagctttcaaccaccacaaggaataagattttactttatcta 62  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  18530160 ttactagttttcaaccaccacaaggtatgtgattttactttatcta 18530205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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