View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_15 (Length: 282)
Name: NF8686_low_15
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 13170392 - 13170654
Alignment:
| Q |
16 |
aaatagagccttactagaaagagagaggtcccacccaaactaaacaaaactttattcaaagttttaacgatgaattagaattaatttggataaaataaga |
115 |
Q |
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| T |
13170392 |
aaatagagccttactcgaaagagagagggcccacccaaactaaacaaaactttattcaaagttttaacgatgaattagaattaatttggataaaataaga |
13170491 |
T |
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| Q |
116 |
tatggaggaccagactaatgtggaatatgattttcgtcggttgaggttagggaatctaactcattcctgccaagaaaggggtttctttgttcttttcgaa |
215 |
Q |
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| T |
13170492 |
tattgaggactagactaatgtggaatatgattttcgtcggttgaggttagggaatctaactcattcctgccaagaaaggggtttctttgttcttttcgaa |
13170591 |
T |
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| Q |
216 |
taatgtgaggagaatatattcccttgtttatgagattacattattcatatagtattatctacc |
278 |
Q |
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| T |
13170592 |
taatgtgaggagaatatattccctagtttatgagattacattattcatataatattatgtacc |
13170654 |
T |
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