View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8686_low_23 (Length: 210)

Name: NF8686_low_23
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8686_low_23
NF8686_low_23
[»] chr1 (8 HSPs)
chr1 (1-195)||(48661664-48661858)
chr1 (3-193)||(48667261-48667451)
chr1 (18-190)||(48628983-48629155)
chr1 (18-192)||(48585442-48585616)
chr1 (14-143)||(48618042-48618171)
chr1 (14-142)||(48653285-48653413)
chr1 (20-195)||(11547343-11547518)
chr1 (8-192)||(48640015-48640199)
[»] chr3 (1 HSPs)
chr3 (3-143)||(19665387-19665527)
[»] chr8 (2 HSPs)
chr8 (3-195)||(27224088-27224274)
chr8 (3-143)||(27228331-27228477)
[»] chr2 (1 HSPs)
chr2 (49-141)||(44044489-44044581)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 48661858 - 48661664
Alignment:
Q  1 tattgggagacagtttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661858 tattgggagacagtttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgt 48661759  T
Q  101 gatatagcttttgaacacaatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661758 gatatagcttttgaacacaatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggt 48661664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 48667451 - 48667261
Alignment:
Q  3 ttgggagacagtttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtga 102  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| || ||| ||||||||||| ||||    
T  48667451 ttgggagacaatttatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtga 48667352  T
Q  103 tatagcttttgaacacaatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattg 193  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||  || |||||||||| |||||||||||||||    
T  48667351 tatagcttttgaacacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattg 48667261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 48629155 - 48628983
Alignment:
Q  18 tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca 117  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||| ||||||||||||||||| ||| |||||||||||||    
T  48629155 tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca 48629056  T
Q  118 caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaa 190  Q
      | |||||||||||||||| ||||| |||||| ||||| ||||| |||  || |||| ||||||||||||||    
T  48629055 tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaa 48628983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 48585616 - 48585442
Alignment:
Q  18 tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca 117  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||   ||| ||||||||||||||||| | |||  ||||||    
T  48585616 tttctcaaatgatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaaca 48585517  T
Q  118 caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaatt 192  Q
    |||||||||||||| ||||| |||||||||||||  ||| |||||  ||  || |||| ||||||||||||||||    
T  48585516 caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaatt 48585442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 48618042 - 48618171
Alignment:
Q  14 tttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||| |||||  ||    
T  48618042 tttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatg 48618141  T
Q  114 aacacaatattccttctgctttattatgga 143  Q
    ||||   ||||||||||||||| |||||||    
T  48618142 aacatggtattccttctgctttgttatgga 48618171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 48653413 - 48653285
Alignment:
Q  14 tttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttg 113  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| |||||  ||    
T  48653413 tttgtttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatg 48653314  T
Q  114 aacacaatattccttctgctttattatgg 142  Q
    ||||   ||||||||||| ||||||||||    
T  48653313 aacatggtattccttctgttttattatgg 48653285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 11547518 - 11547343
Alignment:
Q  20 tctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaacaca 119  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||| ||| |||| |||||||||||| |||||  ||||||      
T  11547518 tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg 11547419  T
Q  120 atattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggt 195  Q
     ||||||||||| ||||||||||  | | |||| |||||||||||| | || |||| ||||| || ||||| ||||    
T  11547418 gtattccttctgttttattatgggttcaatccactgcagtttttgctgcttactataactatttcaacaaactggt 11547343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 48640199 - 48640015
Alignment:
Q  8 agacagtttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatag 107  Q
    ||||| ||| |||| |||||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||    ||| ||||||||||||||||  | |    
T  48640199 agacactttatttcacaaatgataaagaatcatgccgattcaaacaaaccattttcatgtatcataaacaactatttttttccatgggtttgtgacgttg 48640100  T
Q  108 cttttgaacacaatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaatt 192  Q
    ||  |||||||||||||||||||| ||| | |||||||||||||  ||| |||||  ||  || |||| ||||||||||||||||    
T  48640099 ctaatgaacacaatattccttctgttttgtcatggactaattccgctgctgttttcaccacttactataactatgtccacaaatt 48640015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 19665387 - 19665527
Alignment:
Q  3 ttgggagacagtttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtga 102  Q
    |||||| | ||||| ||||||||||||| |||||||||  ||| ||||||||||| ||||| ||  ||||||||||||| ||||||||||||||||||||    
T  19665387 ttgggacaaagtttctttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtga 19665486  T
Q  103 tatagcttttgaacacaatattccttctgctttattatgga 143  Q
    | |||||| | ||||  |||||||||||||||| |||||||    
T  19665487 tgtagcttctcaacatgatattccttctgctttgttatgga 19665527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 27224274 - 27224088
Alignment:
Q  3 ttgggagacagtttgtttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtga 102  Q
    |||||| ||||||| ||||||||||||||||||||      || ||||| | ||| ||||| ||| ||||||||||||| ||||||||||||||||||||    
T  27224274 ttgggaaacagtttctttctcaaatgatcaagaat------gagtcaaatacaccgatttcttgtatcataaacaatccttttcttccatgggtttgtga 27224181  T
Q  103 tatagcttttgaacacaatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggt 195  Q
    | ||||| ||||| |  | |||||||||||||||||||||  | | || ||||| ||||| |||| || |||| ||||| |||||||| ||||    
T  27224180 tgtagctgttgaaaatgagattccttctgctttattatgggttcaatctagtgctgttttcgccgcttactataactatttccacaaactggt 27224088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 27228477 - 27228331
Alignment:
Q  3 ttgggagacagtttgtttctcaaatgatcaagaatcatgctgat------tcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggt 96  Q
    |||||| | ||||| ||||||||||||||||||||||||||| |      ||||| | ||  ||||| ||| ||||||||||||| ||||||||||||||    
T  27228477 ttgggaaaaagtttctttctcaaatgatcaagaatcatgctgctgatgagtcaaatacactgatttcttgtatcataaacaatccttttcttccatgggt 27228378  T
Q  97 ttgtgatatagcttttgaacacaatattccttctgctttattatgga 143  Q
    | ||||| |||||  ||||| | | ||||||||||||||||||||||    
T  27228377 tagtgatgtagctgctgaactcgagattccttctgctttattatgga 27228331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 44044489 - 44044581
Alignment:
Q  49 aaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaacacaatattccttctgctttattatg 141  Q
    ||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||  |||||  ||||||   |||||||| |||||| |||||    
T  44044489 aaacaaaccaatttcatgtatcataaacattccttttgttccatgggtttgtgacgtagctgatgaacatggtattccttatgctttgttatg 44044581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University