View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_3 (Length: 574)
Name: NF8686_low_3
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 535
Target Start/End: Complemental strand, 32326109 - 32325577
Alignment:
| Q |
7 |
attattctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32326109 |
attattctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctaatct |
32326010 |
T |
|
| Q |
107 |
tcctcctctcattggcctttgtaagtcattcttatcattacattacatgcattcttaattacttcggnnnnnnnncttctgcgcgcaatggcagagatta |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||| |
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| T |
32326009 |
tcctcctctcattggcctttgtaagtcattcttattattacattacattcattcttaattacttcggttttttttcttcttcgcgcaattgcagagatta |
32325910 |
T |
|
| Q |
207 |
tcacttcaatttttcatttcactcttttaaacctaaagtattttgcttttcacgtcgttttaactttaatgacgtgnnnnnnnntacataannnnnnn-- |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32325909 |
tcacttcaatttttcatttcactcttttaaacctaaagtattttgcttttcacgtcgttttaactttaatgacgtgaaaaaaaatacataatattttttt |
32325810 |
T |
|
| Q |
305 |
--ggattctttgatgtctcggcaacctctcaaggagttgagatatactactgtcaataggtattatattgtggtaagagagggtgaagagacatcataga |
402 |
Q |
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| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32325809 |
ttgtattatttgatgtctcggcaacctctcaaggagtcgagatatactgctgtcaatcggtattatattgcggtaagagagggtgaagagacatcataga |
32325710 |
T |
|
| Q |
403 |
tannnnnnnctttctccttttaccccttttaatggtggtggtgtaaagaagaaattggatttccggcggttatagtggggacttgaccgtccgatctcat |
502 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||| |
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| T |
32325709 |
tatttttttctttctccttttaccccttttaatggtggtggtgtaaagaggaaattggatttccggtggttatagcggggacttgaccgtccgatcccat |
32325610 |
T |
|
| Q |
503 |
tgttaaagtttataattacaatctcaatctagt |
535 |
Q |
| |
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| T |
32325609 |
tgttaaagtttataattacaatctcaatctagt |
32325577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 38221283 - 38221210
Alignment:
| Q |
39 |
attgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
112 |
Q |
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|||||||| |||||||||||||| | || ||||||||||||||||||||||| || |||||| | |||||||| |
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| T |
38221283 |
attgctgggatcaccattgctagtttggctattcctcaaggcattagttatgcaaagcttgctaaccttcctcc |
38221210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 100
Target Start/End: Original strand, 31744641 - 31744672
Alignment:
| Q |
69 |
attcctcaaggcattagttatgccaaacttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31744641 |
attcctcaaggcattagttatgccaaacttgc |
31744672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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