View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_4 (Length: 534)
Name: NF8686_low_4
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 43669264 - 43669419
Alignment:
| Q |
18 |
ataaattgatcaatgatttaacaatctagacttctcctatacatgatcagaatgaatatcatgacggtttgaaatcaagtacctgaaaacggtaaatgca |
117 |
Q |
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| T |
43669264 |
ataaattgatcaatgatttaacaatctagacttctcctatacatgatcagaatgaatatcatgacggtttgaaatcaagtacctgaaaacggtaaatgca |
43669363 |
T |
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| Q |
118 |
tttcttttttaatttccatgaaaatatccatgtttccctcttctatattttgatgg |
173 |
Q |
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| T |
43669364 |
tttcttttttaatttccatgaaaatatccatgtttccctcatctatattttgatgg |
43669419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 380 - 496
Target Start/End: Original strand, 43669828 - 43669944
Alignment:
| Q |
380 |
tgaataaaaattttaatattattctctatgtattacgtgatgacgatgagatacgatcaatggaaaactttaaaagtttaaagaacacgttgtaattcaa |
479 |
Q |
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| T |
43669828 |
tgaataaaaattttaatattattctctatgtattacgtgatgacgatgagatacgatcaatggaaaactttaaaagtttaaagaacacgttgtaattcaa |
43669927 |
T |
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| Q |
480 |
gatatgatgatatacta |
496 |
Q |
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| T |
43669928 |
gatatgatgatatacta |
43669944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 43669501 - 43669596
Alignment:
| Q |
256 |
cggttgtaaaagacaccgacaccctttgactagtggaccccacaaaccgtctagaaactttgtcaaactagacgacgacgtattggtgtgatggcg |
351 |
Q |
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| T |
43669501 |
cggttgtaaaagacaccgacaccctttgactagtggaccccacaaaccgtctagaaactttgtcaaactagacgacgacgtattggtgtgatggcg |
43669596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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