View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_5 (Length: 451)
Name: NF8686_low_5
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 33437349 - 33437767
Alignment:
| Q |
19 |
taaacgaggtcaaacatgctccgattccaataggaatcggctctctacttggggacaaatgcatgattattccatatacagaatttttattgcataaaag |
118 |
Q |
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| T |
33437349 |
taaacgaggtcaaacatgctccgattcctattgtaatcggctctctacttgcggacaaatgcatgattattccatatacagaatttttattgcataaaag |
33437448 |
T |
|
| Q |
119 |
tatatggtagttatagttatattgtcttgaacagggccctcaaaacnnnnnnnnn--cttttgcggtgcaccatcagaaagtaatcgattcacgttccta |
216 |
Q |
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| T |
33437449 |
tatatggtagttatagttatattgtcttgaacagggccctcaaaacttttttttcttcttttgcggtgcaccatcagaaagtaatcgattcacgttccta |
33437548 |
T |
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| Q |
217 |
gcatatgtgaaattgttttttgatggtcaagttgcttgtggaatctcagttattagtttgtatttagtattatcgttgtttgtgtgtaaccgtcataatt |
316 |
Q |
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| T |
33437549 |
gcatatgtgaaattggtttttgatggtcaagttgcttgtggaatctcaattattagtttgtatttagtattatcgttgtttggggggaaccgtcgtaatt |
33437648 |
T |
|
| Q |
317 |
attacaaatatatctaaaggacgaatgtctaagtatatcaaccatctctctcaaacnnnnnnnnnnnnngggagatccaatgttatgcatggtttgtagc |
416 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33437649 |
attacaaatatatctaaaggacgaatggctaagtatatcaaccatctctctcaaac-aaaaaaaaaaaagggagatccaatgttatgcatggtttgtagc |
33437747 |
T |
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| Q |
417 |
tacaaatgttgtttgatgtc |
436 |
Q |
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| T |
33437748 |
tacaaatgttgtttgatgtc |
33437767 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 28553747 - 28553657
Alignment:
| Q |
232 |
ttttttgatggtcaagttgcttgtggaatctcagttattagtttgtatttagtattatcgttgtttgtgtgtaaccgtcataattattaca |
322 |
Q |
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|||| ||||||| || |||||||| |||||||||| |||||||||||||||| ||| |||| |||||| |||| |||||||||||||| |
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| T |
28553747 |
ttttatgatggtaaatttgcttgtagaatctcagtctttagtttgtatttagtgctattgttgattgtgtctaacaatcataattattaca |
28553657 |
T |
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