View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8686_low_7 (Length: 437)
Name: NF8686_low_7
Description: NF8686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8686_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 45122857 - 45122559
Alignment:
| Q |
8 |
attatactagtaacaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
107 |
Q |
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| T |
45122857 |
attatactagtaccaaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtat |
45122758 |
T |
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| Q |
108 |
ttaaaaacttgatcattgttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
207 |
Q |
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| T |
45122757 |
ttaaaaacttgatcattcttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaa |
45122658 |
T |
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| Q |
208 |
ttaaatgtattgaaatataaaagataataagtccaatatattttaaagctaatctcacgaacaagttatcttggacaacaaaccataacttcaacatct |
306 |
Q |
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| T |
45122657 |
ttaaatgtattgaaatataaaagataataagtccaatatattttaaagctaatttcatgtctcaattatcttggacaacaaaccataacttcaacatct |
45122559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 45121969 - 45121904
Alignment:
| Q |
172 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
237 |
Q |
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| T |
45121969 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
45121904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 45122535 - 45122454
Alignment:
| Q |
309 |
ttttgcacagaagctcgagcacaccgagaatgaagagaaaatgcgcgatgtgcattgagtgactttaaagaaatacagaattcaaatca |
397 |
Q |
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| T |
45122535 |
ttttgcacagaagctcgagctcaccgagaatgaagagaaa-------atgtgctttgcgtcactttaaagaaatacagacttcaaatca |
45122454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 45122023 - 45121979
Alignment:
| Q |
208 |
ttaaatgtattgaaatataaaagataataagtccaatatatttta |
252 |
Q |
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| T |
45122023 |
ttaaatgtattgaaatataaaagattataagcccaacatttttta |
45121979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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