View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8687_high_3 (Length: 331)
Name: NF8687_high_3
Description: NF8687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8687_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 27689771 - 27689998
Alignment:
| Q |
24 |
gtgaactttggattctaaatagttctagaatgatatcaaggttgacttcatgaaattcatcactgaacactaattggagcatccatgagggagctaatat |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27689771 |
gtgaactttggagtctaaatagttctagaatgatatcaaggttgacttcatgaaagtcatcactgaatactaattggagcatccatgagggagcta---- |
27689866 |
T |
|
| Q |
124 |
atagtttgtttatttgactttttcataaaaagatgaatccataggagat----tgaatggattttgactgat---attcaccattgtgtgcatgtacaaa |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27689867 |
atagtttgtttattttactttttcataaaaagatgaatccataggagattgaatgaatggattttgactgatataattcaccattgtgtgcatgtacaaa |
27689966 |
T |
|
| Q |
217 |
gtgctatcaaatgaatttccataatacaaaaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27689967 |
gtgctatcaaatgaatttccataatacaaaaa |
27689998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 34578952 - 34578848
Alignment:
| Q |
124 |
atagtttgtttatttgac--tttttcataaaaagatgaatccataggagattgaatggattttgactgatattcaccattgtgtgcatgtacaaagtgct |
221 |
Q |
| |
|
||||||||||||||| || ||||||| | ||| ||||||||||| |||||||||||||||||||||| |||| | ||||||||||| |||||||||| |
|
|
| T |
34578952 |
atagtttgtttattttaccttttttcacataaaaatgaatccataa-agattgaatggattttgactgacattcccagttgtgtgcatgcacaaagtgct |
34578854 |
T |
|
| Q |
222 |
atcaaa |
227 |
Q |
| |
|
|||||| |
|
|
| T |
34578853 |
atcaaa |
34578848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 27690083 - 27690150
Alignment:
| Q |
249 |
ttcatagcattaatttattggcatgtgtgtgaacaaaattc----ataggtgtgtgaaactcagtacttcct |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27690083 |
ttcatagcattaatttattggca----tgtgaacaaaattcatatataggtgtgtgaaactcagtacttcct |
27690150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 35087689 - 35087486
Alignment:
| Q |
25 |
tgaactttggattctaaatagttctagaatgatatcaaggttgacttcatgaaattcatcactgaacactaattggagcat-------ccatgagggagc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
35087689 |
tgaactttggattctaaatagctctagaatgatatcaaggttgacttcatgaaattcatcactgaacactaattggagcatccataccccataagggagc |
35087590 |
T |
|
| Q |
118 |
taatatatagtttgtttatttgactttttcataaaaagatgaatccataggagattgaatggattttgactgatattcaccattgtgtgcatgtacaaag |
217 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
35087589 |
ta----atagtttgtttattttactttttcataaaaagatgaatcca---gagattgaatggattttgactgatattcccaattgtgtgcatgtacaaat |
35087497 |
T |
|
| Q |
218 |
tgctatcaaat |
228 |
Q |
| |
|
||| ||||||| |
|
|
| T |
35087496 |
tgcaatcaaat |
35087486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University