View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8687_low_1 (Length: 527)
Name: NF8687_low_1
Description: NF8687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8687_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 225 - 511
Target Start/End: Original strand, 43338001 - 43338287
Alignment:
| Q |
225 |
cagtgaaagaggtgtttagcaagggtatcattaggcataaactcagcaacaagtaacctctcatcaccatcacaacaataaccaatcaaattagcaagtc |
324 |
Q |
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| T |
43338001 |
cagtgaaagaggtgtttagcaagggtatcattaggcataaactcagcaacaagtaacctctcatcaccatcacaacaataaccaatcaaattagcaagtc |
43338100 |
T |
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| Q |
325 |
gaggatgacgcaatttgccaacaccagaagcttcttcaacaaactgttttggatccggccaagcagctttcccgaacttcttcacagcaatccaacgttt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43338101 |
gaggatgacgcaatttgccaacaccagaagcttcttcaacaaactgttttggatccggccaagcagctttaccgaacttcttcacagcaatccaacgttt |
43338200 |
T |
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| Q |
425 |
ctgattctgtaaccttcctttgtaaaccaaattaggtgccttttcaccgctctcagaaacaatatattctgagctgaaattattggt |
511 |
Q |
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| T |
43338201 |
ctgattctgtaaccttcctttgtaaaccaaattaggtgccttttcaccgctctcagaaacaatatattctgagctgaaattattggt |
43338287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 43337781 - 43337909
Alignment:
| Q |
1 |
taagcattcaaatcatggtataaagggcgtccttcagaagtacaataatgcaaagcttgtgcaatataaagagcaactcttaaacgcatggcccactcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43337781 |
taagcattcaaatcatggtataaagggcgtccttcagaagtacaataatgcaaagcttgtgcaatataaagagcaactcttaaacgcatggcccactcaa |
43337880 |
T |
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| Q |
101 |
tagtttgattttcccctgaaataaaataa |
129 |
Q |
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| T |
43337881 |
tagtttgattttcccctgaaattaaataa |
43337909 |
T |
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