View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8687_low_2 (Length: 363)
Name: NF8687_low_2
Description: NF8687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8687_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 9675212 - 9675588
Alignment:
| Q |
12 |
acatcatatacacgtggcagcctcgtattcgttgtgtttacgtgtactaacatcagaaatacaagtcaaatttcgtttctt------------gtataaa |
99 |
Q |
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| T |
9675212 |
acatcatatacacgtggcagcctcgtattcgctgtgtttacgtgtactaacatcaaaaatacaagtcaaatttcgtttcttatttaaaatcttgtataaa |
9675311 |
T |
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| Q |
100 |
aatgttataacgaagtaaacgattatacgcattcgttttaaaacttcattcaccaactcctacgaatctctgcaatcagaatttctcattcaggttcgtt |
199 |
Q |
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| T |
9675312 |
aatgttataacgaagtaaacgattatacgcattagttttaaaacttcattcaccaactcctacgaatctctgcaatcagaatttctcattcaggttcgtt |
9675411 |
T |
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| Q |
200 |
atttcaattatctcattttgtttaatctcattaataattttgatttgtttatgtatttcgaattccatgcaattaagaattttagatcttcaattttgct |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9675412 |
atttcaattatctgattttgtttaatctcattaataattttgatttgtttatgtatttcgaattccatgcaattaagaattttagatcttcaattttgct |
9675511 |
T |
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| Q |
300 |
tgtaattatct-------------attgaagtttatgatatttttatgaacttaataatactcctcggattaggtgt |
363 |
Q |
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| T |
9675512 |
tgtaattatctaatttttaatcggattgaagtttatgatatttttatgaacttaataatactcctcggattaggtgt |
9675588 |
T |
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