View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8688_1 (Length: 318)
Name: NF8688_1
Description: NF8688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8688_1 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 34387283 - 34387590
Alignment:
| Q |
1 |
attcctaactccacctcctctcaaacatccaaacaaattgctcaacattctacgaaatgcaccccctctacttcttcctatccctcctctagatgatgtc |
100 |
Q |
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| T |
34387283 |
attcctaactccacctcctctcaaacatccaaacaaattgctcaacattctacgaaatgcaccccctctacttcttcctatccctcctctagatgatgtc |
34387382 |
T |
|
| Q |
101 |
aatgaccatgaaatccttcttggttctccaacattgttaaatgcaccatccacttctgtgtaaacaataggatgctccattctattctcacccccacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34387383 |
aatgaccatgaaatccttcttggttctccaacattgttaaatgcaccatccacttctgtgtaaacaataggatgctccattctattctcacccccacctc |
34387482 |
T |
|
| Q |
201 |
catcaccagaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgtt |
300 |
Q |
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| T |
34387483 |
cgtcaccagaaaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaacattctcgtcttcattcgaattggaaatttcattgtt |
34387582 |
T |
|
| Q |
301 |
aatctgtg |
308 |
Q |
| |
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||| |||| |
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| T |
34387583 |
aatttgtg |
34387590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 41697403 - 41697456
Alignment:
| Q |
211 |
aaatcttccaacggcaaaccctccacccggtaacctccaaattgtcaacccaac |
264 |
Q |
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|||||||||||| ||||| || || |||||||||||||| |||||||| ||||| |
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| T |
41697403 |
aaatcttccaacagcaaatccacctcccggtaacctccatattgtcaatccaac |
41697456 |
T |
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