View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8688_low_2 (Length: 783)
Name: NF8688_low_2
Description: NF8688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8688_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Complemental strand, 16585008 - 16584425
Alignment:
| Q |
18 |
agtaatgtctctttgaaatctgatagatcatgtgtgggtaggtgggattcgtcaatagcttcattttggtaccacatttgcatgaatctaactaaaaatg |
117 |
Q |
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| T |
16585008 |
agtaatgtctctttgaaatctgatagatcatgtgtgggtaggtggaattcgtcaatagcttcattttggtaccacatttgcatgaatctaactaaaaatg |
16584909 |
T |
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| Q |
118 |
agcgagttgtggtgctggtctgtgacctagagagagtagagagcaaaattttgtgtttttatgattcttggaccacagtcttata----ctatatatagt |
213 |
Q |
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| T |
16584908 |
agcgagttgtggtgctggtctgtgacctagagag---------caaaattttgtgtttttatgattcttggaccacagtcttatatatactatatatagt |
16584818 |
T |
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| Q |
214 |
aagtgtgtggtttggaaataaatcggatctagtacactaatgattcggacatacgttacttgataatgctctattatacttctttgacaattctaacctt |
313 |
Q |
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| T |
16584817 |
aagtgtgtggtttggaaataaatcggatctagtacactaatgattcggacatacgttacttgataatgctctattatacttctttgacaattctaacctt |
16584718 |
T |
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| Q |
314 |
tatagaacagtttaaaattatcgtgctactcagaaacctctaatcaagtgacaacctcttttctcgaagnnnnnnnnnntctcattctagtacttctaaa |
413 |
Q |
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| T |
16584717 |
tatagaacagtttaaaattatcgtgctactcaaaaacttctaatcaagtgacaacctcttttctcgaag-aaaaaaaaatctcattctagtacttctaaa |
16584619 |
T |
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| Q |
414 |
aagtaacgactcaaaatttctctacaactacaaacgacatatacattctctggttgaattttgatgactatcagagtttattcaaatctttaatcaaaga |
513 |
Q |
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| T |
16584618 |
aagtaacgactcaaaatttctcttcaactacaaacgacatatacattctctggttaaattttgatgactatcagagtttattcaaatctttaatcaaaga |
16584519 |
T |
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| Q |
514 |
aaaatttatattcgatttcacttaattccaaaatttttcacaaagcacaacataaaatatttcagaaataaccatgcttgcacattgtaatata |
607 |
Q |
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| T |
16584518 |
aaaatttctattcgatttcacttaattccaatttttttcacaaagcacaacataaaatatttcagaaataaccatgcttgcacattgtaatata |
16584425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 610 - 783
Target Start/End: Complemental strand, 16584400 - 16584227
Alignment:
| Q |
610 |
aataaactgcaatcattattatttttatcagcataaacactctgggttcacatcaaaaatccttcaaaccacgacgaggtaaattcatataccaatgaag |
709 |
Q |
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| T |
16584400 |
aataaactgcaatcattattatttttatcagcataaacactctgggttcacagcaaaaatccttcaaaccacgacgaggtaaattcatataccaatgaag |
16584301 |
T |
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| Q |
710 |
tgtggcgtccttctccttcaaggtgcctgataggatttttcacttcaagggttttgcggcgccaacgaacacca |
783 |
Q |
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| T |
16584300 |
tgtggcctccttctccttcaaggtgcctgataggatttttcacttcaagggttttgcggcgccaacgaacacca |
16584227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 12112025 - 12112083
Alignment:
| Q |
467 |
ttgaattttgatgactatcagagtttattcaaatctttaatcaaagaaaaatttatatt |
525 |
Q |
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| T |
12112025 |
ttgaattttgatgactataagagtccattcaaatctgtaatcacagatgaatttatatt |
12112083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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