View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8688_low_3 (Length: 404)

Name: NF8688_low_3
Description: NF8688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8688_low_3
NF8688_low_3
[»] chr4 (3 HSPs)
chr4 (152-233)||(612582-612663)
chr4 (313-386)||(612743-612816)
chr4 (1-64)||(612431-612494)
[»] chr2 (3 HSPs)
chr2 (313-386)||(27202940-27203013)
chr2 (313-386)||(27858087-27858160)
chr2 (174-233)||(39437352-39437411)
[»] chr6 (2 HSPs)
chr6 (152-233)||(15652296-15652376)
chr6 (1-64)||(15652148-15652211)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 612582 - 612663
Alignment:
Q  152 ctcaatcgaatatgataccgttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  612582 ctcaatcgaatatgataccgttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatc 612663  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 612743 - 612816
Alignment:
Q  313 gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  612743 gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttc 612816  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 612431 - 612494
Alignment:
Q  1 acaaggacaaactgtatcactcattggaaatagttataatagataataaggttgtttgacacca 64  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  612431 acaaggaaaaactgtctcactcattgcaaatagttataatagataataaagttgtttgacacca 612494  T

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Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 27203013 - 27202940
Alignment:
Q  313 gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttc 386  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27203013 gaaataaatttttcaccaaagcattctaatgacatgtggtttcatggactaaactcaagcttctcatgcatttc 27202940  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 27858160 - 27858087
Alignment:
Q  313 gaaataaatttctcaccaaagcattctaacgacatgtggtttcatggactaaactcaagcttctcatgcatttc 386  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27858160 gaaataaatttttcaccaaagcattctaatgacatgtggtttcatggactaaactcaagcttctcatgcatttc 27858087  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 39437352 - 39437411
Alignment:
Q  174 gaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatc 233  Q
    ||||||||||||||| | |||||||| ||| || |||||| ||||||| |||||||||||    
T  39437352 gaattcgtttatgatatttcccattcgcatcaagaaacttggagtatcgatggtcgaatc 39437411  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 15652296 - 15652376
Alignment:
Q  152 ctcaatcgaatatgataccgttgaattcgtttatgatgtctcccattcacataaacaaactttgagtatcaatggtcgaatc 233  Q
    |||||||||||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15652296 ctcaatcgaatatgatactgttgaattcgttcctgatgtctccc-ttcacataaacaaactttgagtatcaatggtcgaatc 15652376  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15652148 - 15652211
Alignment:
Q  1 acaaggacaaactgtatcactcattggaaatagttataatagataataaggttgtttgacacca 64  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15652148 acaaggacaaactctctcactcattggaaatagttataatagataataaggttgtttgacacca 15652211  T

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