View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8688_low_4 (Length: 361)
Name: NF8688_low_4
Description: NF8688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8688_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 780203 - 780556
Alignment:
| Q |
1 |
ttacacctttgttctttataatggaca-ctccaaatcatgttaatggcatggatctggagaaatattcctggactcaaactttgcaagaggtcaatgtga |
99 |
Q |
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| T |
780203 |
ttacacctttgttctttataatggacagctccaaatcaaggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtga |
780302 |
T |
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| Q |
100 |
atgttccggtgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattga |
199 |
Q |
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| T |
780303 |
atgttccggtgccaaatggaacaaaatcagggtttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattga |
780402 |
T |
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| Q |
200 |
tgtaagcttttactcagttatatattcggagttactatcaaaagataaatcttacctgcgacatatatttgtgttatttttctaaattgatcgttccttt |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
780403 |
tgtaagcttttactcagttatatattcgcagttactatcaaaagataaatcttacctgcgacatatatttgtgttattttt-gaaattgatcgttccttt |
780501 |
T |
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| Q |
300 |
tatctttcaatctgtaatttttagtttgtttgaagtttttgtgatgtctctgcta |
354 |
Q |
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| T |
780502 |
tatctttcaatctgtaatttttagtttgtttgaagtttttgtgatgtctgtgcta |
780556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 771133 - 770921
Alignment:
| Q |
10 |
tgttctttataatggaca-ctccaaatcatgttaatggcatggatctggagaaatattcctggactcaaactttgcaagaggtcaatgtgaatgttccgg |
108 |
Q |
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| T |
771133 |
tgttttttataatggacagcaccaaatcagggtaatggtatggatttggagaagtattcctggactcaaactttgcaagagctgaatgtgaatgttccag |
771034 |
T |
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| Q |
109 |
tgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattgatgtaagctt |
208 |
Q |
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| T |
771033 |
tgccaaatggaacaaaatcagggtttgtcatctgtgagattaagaagaaccatctaaaagttggactcaaagggcagccaccaattattgatgtaagcat |
770934 |
T |
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| Q |
209 |
ttactcagttata |
221 |
Q |
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| T |
770933 |
ttactcagttata |
770921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 784898 - 785110
Alignment:
| Q |
1 |
ttacacctttgttctttataatggaca-ctccaaatcatgttaatggcatggatctggagaaatattcctggactcaaactttgcaagaggtcaatgtga |
99 |
Q |
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||||| ||||| ||||| |||| |||| |||| ||||| | |||||| |||||||||||||||||||| |||||||||||| | |||||| ||||||||| |
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| T |
784898 |
ttacatctttgctctttttaattgacagctcccaatcagggtaatggtatggatctggagaaatattcttggactcaaactcttcaagagctcaatgtga |
784997 |
T |
|
| Q |
100 |
atgttccggtgccaaatggaacaaaatcaggatttgtcatctgtgagataaagaagaatcatctaaaagttggactcaaagggcagccaccaattattga |
199 |
Q |
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||||||| |||||||| |||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
784998 |
atgttccagtgccaaacggaacaaaatcaaggtttgtcacatgtgagataaagaagaaccatctaaaagttggaatcaaagggcagccaccaattattga |
785097 |
T |
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| Q |
200 |
tgtaagcttttac |
212 |
Q |
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| T |
785098 |
tgtaagcttttac |
785110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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