View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8688_low_5 (Length: 278)
Name: NF8688_low_5
Description: NF8688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8688_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 4956977 - 4956728
Alignment:
| Q |
17 |
aagaggttgctagaaagtattttcaacaattgatttctgctgttggattttgtcatgctagaggt-gtttatcatagggatcttaagcctgaaaatttgt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4956977 |
aagaggttgctagaaagtattttcaacaattgatttctgctgttggattttgtcatgctagaggttgtttatcatagggatcttaagcctgaaaatttgt |
4956878 |
T |
|
| Q |
116 |
tgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4956877 |
tgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtac |
4956778 |
T |
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| Q |
216 |
tcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4956777 |
tcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtg |
4956728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 45268360 - 45268324
Alignment:
| Q |
207 |
ttgtggtactcctgcttatgttgcacctgaggttttg |
243 |
Q |
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|||||| ||||||||||||||||||||||| |||||| |
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| T |
45268360 |
ttgtgggactcctgcttatgttgcacctgaagttttg |
45268324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 35827926 - 35828174
Alignment:
| Q |
17 |
aagaggttgctagaaagtattttcaacaattgatttctgctgttggattttgtcatgctagaggtgtttatcatagggatcttaagcctgaaaatttgtt |
116 |
Q |
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|||| ||||| || || |||||||| || || || | |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |
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| T |
35827926 |
aagaagttgcaaggaaatattttcagcagttaatatgtgctgttggattttgtcatgctagaggtgtttttcatagagatctaaagcctgaaaatttgtt |
35828025 |
T |
|
| Q |
117 |
gcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtact |
216 |
Q |
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||||||||| || ||||| | ||||| || ||||||||| | |||||||| || ||| |||||| |||||||| ||||||||||||||||||||||| |
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| T |
35828026 |
gcttgatgaaaaaggtaaccttaaagtttcagattttggtcttagtgctgtgtcggatgaaattaagcaagatgggttgtttcatactttttgtggtaca |
35828125 |
T |
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| Q |
217 |
cctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtg |
265 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
35828126 |
cctgcttatgttgctcctgaggttttgtctaggaaaggttatgatggtg |
35828174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 40354107 - 40354003
Alignment:
| Q |
115 |
ttgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggta |
214 |
Q |
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||||||||||| ||| ||||||||||| | |||||||||||||| ||| || |||| |||||||||||||||||||| |||||| |||||||||| ||| |
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| T |
40354107 |
ttgcttgatgataattgtaatttgaaactttctgattttggtttaagtattgcttctcatcaaattagacaagatggtctgtttcttactttttgttgta |
40354008 |
T |
|
| Q |
215 |
ctcct |
219 |
Q |
| |
|
||||| |
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|
| T |
40354007 |
ctcct |
40354003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 43305814 - 43305846
Alignment:
| Q |
187 |
gatggtttgtttcatactttttgtggtactcct |
219 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
43305814 |
gatggtttgtttcttactttttgtggtactcct |
43305846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 27312474 - 27312243
Alignment:
| Q |
34 |
tattttcaacaattgatttctgctgttggattttgtcatgctagaggtgtttatcatagggatcttaagcctgaaaatttgttgcttgatgagaatggta |
133 |
Q |
| |
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|||||||| ||||| || || |||||||| | ||||||| | |||| |||| |||| ||||||||||||| || |||||||| | ||||| ||||| | |
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| T |
27312474 |
tattttcatcaattaatctcggctgttggttattgtcattcacgaggggtttttcatcgggatcttaagccggagaatttgttattagatgaaaatggga |
27312375 |
T |
|
| Q |
134 |
atttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggtactcctgcttatgttgcacc |
233 |
Q |
| |
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|||| ||||| || ||||| || || ||||| || | |||| || || ||||| ||| |||||||| ||||||| || |||||||| || ||||| |
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| T |
27312374 |
atttaaaagtttcggatttcgggttaagtgcagtcacaaatcagatccgatccgatggattgcttcatactctttgtggaacccctgcttacgtggcacc |
27312275 |
T |
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| Q |
234 |
tgaggttttggctaggaaaggttatgatggtg |
265 |
Q |
| |
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||||||| | |||| | ||| |||||||||| |
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| T |
27312274 |
tgaggttcttgctaagcgaggatatgatggtg |
27312243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 31892668 - 31892720
Alignment:
| Q |
184 |
caagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctga |
236 |
Q |
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|||||||||||||| ||||| |||||| ||||||||||||||||| ||||| |
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| T |
31892668 |
caagatggtttgttgcatacaacttgtggaactcctgcttatgttgctcctga |
31892720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 44721173 - 44721141
Alignment:
| Q |
187 |
gatggtttgtttcatactttttgtggtactcct |
219 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
44721173 |
gatggtttgtttcttactttttgtggtactcct |
44721141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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