View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8689_high_2 (Length: 552)
Name: NF8689_high_2
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_high_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 43600078 - 43600561
Alignment:
| Q |
17 |
agcttgttgggg-aatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600078 |
agcttgttgggggaatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgt |
43600177 |
T |
|
| Q |
116 |
gtatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600178 |
gtatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtact |
43600277 |
T |
|
| Q |
216 |
agtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600278 |
agtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttc |
43600377 |
T |
|
| Q |
316 |
tgttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttcta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600378 |
tgttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttcta |
43600477 |
T |
|
| Q |
416 |
tcaactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600478 |
tcaactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
43600561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 43605570 - 43606053
Alignment:
| Q |
17 |
agcttgttgggg-aatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605570 |
agcttgttgggggaatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgt |
43605669 |
T |
|
| Q |
116 |
gtatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605670 |
gtatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtact |
43605769 |
T |
|
| Q |
216 |
agtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605770 |
agtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttc |
43605869 |
T |
|
| Q |
316 |
tgttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttcta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605870 |
tgttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttcta |
43605969 |
T |
|
| Q |
416 |
tcaactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605970 |
tcaactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
43606053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 43611062 - 43611545
Alignment:
| Q |
17 |
agcttgttgggg-aatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgt |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43611062 |
agcttgttgggggaatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgt |
43611161 |
T |
|
| Q |
116 |
gtatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43611162 |
gtatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtact |
43611261 |
T |
|
| Q |
216 |
agtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611262 |
agtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttc |
43611361 |
T |
|
| Q |
316 |
tgttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttcta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611362 |
tgttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttcta |
43611461 |
T |
|
| Q |
416 |
tcaactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611462 |
tcaactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
43611545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Complemental strand, 55338334 - 55337814
Alignment:
| Q |
17 |
agcttgttggggaatgcttcataatccccaagctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55338334 |
agcttgttggggaatgcttcataatccccatgctcttcaggtcagcatgctgaaaggcattcatttaatgaatgttcgtaggcatactgttaggaatgtg |
55338235 |
T |
|
| Q |
117 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
216 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55338234 |
tacgttaggtgcaggctcgatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttg----- |
55338140 |
T |
|
| Q |
217 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55338139 |
--aactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatttcatttgtattttct |
55338042 |
T |
|
| Q |
317 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
55338041 |
gttttcaatgcataaccaactcaaaaggaaggattattcccagagttttattaataaataagtcctgttcagtattagtacgaatcttacaaggttctat |
55337942 |
T |
|
| Q |
417 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtggatgaacatgaacgatta |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55337941 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgctttggggaagacgacggtggatgaacatgaacgatta |
55337842 |
T |
|
| Q |
517 |
atctgagtgtattttttcttttcttctc |
544 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
55337841 |
atctgagtgtatttttccttttcttctc |
55337814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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