View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_high_24 (Length: 232)
Name: NF8689_high_24
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 1503461 - 1503693
Alignment:
| Q |
4 |
gagttgggttaaatagaaaagtgttgagtcatggggttagtgaaaataaatgc----agctaggtagagataatatagaaagaggaagaagatgggnnnn |
99 |
Q |
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| T |
1503461 |
gagttgggttaaatagaaaagtgttgagtcatggggttagtgaaaataaatgcagctagctaggtagagataatatagaaagaggaagaagttgggaaaa |
1503560 |
T |
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| Q |
100 |
nnngagtaaggtttgaggtgttgtgtgatgtgtatggnnnnnnnnaagtgaaaccgtgaactactctacgtgtctaacttttctagtttaggtgccttgt |
199 |
Q |
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| T |
1503561 |
aaagattaaggtttgaggtgttgtgtgatgtgtatggttttttttaagtgaaaccgtgaactactctacgtgtctaacttttctagtttaggtgccttct |
1503660 |
T |
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| Q |
200 |
ctaatgctttatatttataatgtcttttgaaag |
232 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
1503661 |
ctaatgctttacatttataatgtcttttgaaag |
1503693 |
T |
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