View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_high_27 (Length: 223)
Name: NF8689_high_27
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 52798750 - 52798556
Alignment:
| Q |
1 |
attttccacaaatctctcttgatgctctatcaattgttttctccatattaataaaaactaagtgtagnnnnnnn-gtccatctgatattgtttcatcaca |
99 |
Q |
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| T |
52798750 |
attttccacaaatctctcttggtgatctatcaattgttttctccatattaataaaaactaagtgtagtattttttgtccatctgatatcgtttcatcaca |
52798651 |
T |
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| Q |
100 |
caccatagcaagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgcta |
194 |
Q |
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| T |
52798650 |
cgctatagcaagtagatagcttccatggtcgatctctctaacataaaatcaaattggttttcaataacttgagtctattttcttagtctctgcta |
52798556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 50630446 - 50630495
Alignment:
| Q |
109 |
aagtagatagcttccatggtcgatctctctaacataaaatcaaattggtt |
158 |
Q |
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| T |
50630446 |
aagtagattgcttccatggtcgacctcgcaagcataaaatcaaattggtt |
50630495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 13148445 - 13148398
Alignment:
| Q |
141 |
cataaaatcaaattggttttcaataacttgagtctattttcttagtct |
188 |
Q |
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| T |
13148445 |
cataaaatcaaattggttatcgataactcgagtctcttttcttagtct |
13148398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 20499232 - 20499184
Alignment:
| Q |
141 |
cataaaatcaaattggttttcaataacttgagtctattttcttagtctc |
189 |
Q |
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||||||| |||||||||| ||||||||||| | ||||||||||||||| |
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| T |
20499232 |
cataaaaccaaattggttatcaataacttgcgcttattttcttagtctc |
20499184 |
T |
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