View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_high_4 (Length: 408)
Name: NF8689_high_4
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_high_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 3296608 - 3297015
Alignment:
| Q |
1 |
tagaaaggtacaaaatggaggtggcccatttccttccaaaatagggacacaaatttaggactataccaagtggctaaaatatgacttagtaggcgtaata |
100 |
Q |
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| T |
3296608 |
tagaaaggtacaaaatggatgtggcccatttccttccaaaatagggacacaaatttaggactataccaagtggctaaaatatgacttagtaggcgtaata |
3296707 |
T |
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| Q |
101 |
tgaccaaaacatgtaagaatcaaatttttcacatatttagtttactacatacaagagataaggacattgcatagggtgccaagagttgctctgttggctt |
200 |
Q |
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| T |
3296708 |
tgaccaaaacatgtaagaatcaaatttttcacatatttagtttactacatacaagagataaggacattgcatagggtgccaagagttgctctgttggctt |
3296807 |
T |
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| Q |
201 |
agaatgacaagtcatctgaagggtatccccacacaatatacactagcgtggggcagtagtgagcacaataagggacacaagaatgagacaagagagaatt |
300 |
Q |
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| T |
3296808 |
agaatgacaagtcatctgaagggtatccccacacaatatacactagcgtggggcagtagtgagcacaataagggacacaagaatgagacaagagagaatt |
3296907 |
T |
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| Q |
301 |
taaataagaataatgtttataaagcaaaaagtcaaaaagacttttagtgaagaagacaaaaagaggaagaatcagatgtggtgcagcagagatagcccac |
400 |
Q |
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| T |
3296908 |
taaataagaataatgtttataaagcaaaaagtcaaaaagacttttagtgaagaagacagaaagaggaagaatcagatgtggtgcagcagagatagcccac |
3297007 |
T |
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| Q |
401 |
atgggttc |
408 |
Q |
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| T |
3297008 |
atgggttc |
3297015 |
T |
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