View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_high_5 (Length: 404)
Name: NF8689_high_5
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 3176775 - 3177154
Alignment:
| Q |
9 |
ggtgttctctttatttccgttccattaggccttggagtcgcggtaagcttcaaaattcacatgtcttttctgtttttacaaaggatttaattcatatgca |
108 |
Q |
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| T |
3176775 |
ggtgttctctttatttccgttccattaggccttggagtcgcggtaagcttcaaaattcacatgtcttttctgtttttacaaaggatttaattcatataca |
3176874 |
T |
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| Q |
109 |
ccgaaaatgtaaaaattatttcactgtcgatcaatcataaccgtaagacgattaaaaatatttgacttcaatgataactactataaaagcattttcatta |
208 |
Q |
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| T |
3176875 |
ccgaaaatgtaaaaattatttcactgtcgatcaatcataaccgtaagacgattaaaaatatttgacttcaatgataactactataaaagcatgttcatta |
3176974 |
T |
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| Q |
209 |
cccttcgactgaattttccaaatcattttaggtggcaatatcagtcttcaaaatcctgcttcacgtctctaggccaaacacatcggttttgggaaacatt |
308 |
Q |
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| T |
3176975 |
cccttcgactgaattttccaaatcattttaggtggcaatatcagtcttcaaaatcctgcttcacgtctctaggccaaacacatcggttttgggaaacatt |
3177074 |
T |
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| Q |
309 |
ccagggacaccaatattccataacctaatccaatataaagaagctataaggattcctgcatttatcattttggctgttga |
388 |
Q |
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| T |
3177075 |
ccagggacaccaatattccataacctaatccaatataaagaagctataaggattcctgcatttatcattttggctgttga |
3177154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 388
Target Start/End: Complemental strand, 44010347 - 44010205
Alignment:
| Q |
246 |
atatcagtcttcaaaatcctgcttcacgtctctaggccaaacacatcggttttgggaaacattccagggacaccaatattccataacctaatccaatata |
345 |
Q |
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| T |
44010347 |
atatcagtcttcaagatcctacttcatgtctccagaccaaacactttggtgttaggaaacatacctggaacacagatattccataacataaaccaataca |
44010248 |
T |
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| Q |
346 |
aagaagctataaggattcctgcatttatcattttggctgttga |
388 |
Q |
| |
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|||||||| |||| ||||| | ||| |||||||||||||||| |
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| T |
44010247 |
aagaagctttaagagttccttcgtttctcattttggctgttga |
44010205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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