View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_12 (Length: 320)
Name: NF8689_low_12
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 42432653 - 42432334
Alignment:
| Q |
1 |
ccacgttatttagaaagagaagtcacacacaaaaacaaaaccactgtgaagctgaaaagaaatcaaagaagaatccaaatccaaaccgaacccgaatatt |
100 |
Q |
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| T |
42432653 |
ccacgttatttagaaagagaagtcacacacaaaaacaaaaccactgtgaagctgaaaagaaatcaaagaagaatccaaatccaaaccgaacccgaatatt |
42432554 |
T |
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| Q |
101 |
aacatcctcaattcctcatcccaaacaaacacatcaaaatcaccacacttattccttttgacctctttcataatacacccccttccaccctctattttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42432553 |
aacatcctcaattcctcatcccaaacaaacacatcaaaatcacaacacttgttccttttgacctctttcataatacacccccttccaccctccattttct |
42432454 |
T |
|
| Q |
201 |
ccttcccaatccataatggatttaaccctaaccccaattcaaattcaaacctatcatcaaaacattcaaaaccacaactacagcatctcaaacacagnnn |
300 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
42432453 |
ccttcccaattcataatggatttaaccataaccccaattcaaattcaaacctatcatcaaaacattcaaaaccacaactacaacaactcaaacacagaaa |
42432354 |
T |
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| Q |
301 |
nnnnccacctcgtttgaaat |
320 |
Q |
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|||||||||||||||| |
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| T |
42432353 |
aaaaccacctcgtttgaaat |
42432334 |
T |
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