View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_13 (Length: 318)
Name: NF8689_low_13
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 6074593 - 6074300
Alignment:
| Q |
9 |
tggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaacaaatccgtctcacataaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6074593 |
tggtgtttggaagaactggtgaaagtgctggaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaacaaatccgtctcacataagaa |
6074494 |
T |
|
| Q |
109 |
atcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaacttatagtgcttaagtggagatc |
208 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6074493 |
atcagactcatagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaacttatagtgcttaagtggagatc |
6074394 |
T |
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| Q |
209 |
tgcccttgctgaagcagccactatatctggatgggacactcatactcacaagtaagtaaccagttttagatgaattttttaagatattcaattc |
302 |
Q |
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| T |
6074393 |
tgcccttactgaagcagccactatatctggatgggacactcatactcacaagtaagtaaccagttttagatgaattttttaagatattcaattc |
6074300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 6197100 - 6196943
Alignment:
| Q |
9 |
tggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaacaaatccgtctcacataaaaa |
108 |
Q |
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|||||||||||||||||||| ||||| ||| |||||||||||| | | ||||||||||||||||||||||||||||||||| |||| ||| |||||| || |
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| T |
6197100 |
tggtgtttggaagaactggtcaaagtactggaatgcagaaaagtcaaaggtcaagttgttatacctgttttctataaaacagatccatctgacataagaa |
6197001 |
T |
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| Q |
109 |
atcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaa |
166 |
Q |
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| T |
6197000 |
atcagactggcagttatgagaatgcattcgcaaaacatgagcgagatcttgggaccaa |
6196943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 6196938 - 6196860
Alignment:
| Q |
186 |
cttatagtgcttaagtggagatctgcccttgctgaagcagccactatatctggatgggacactcatactcacaagtaag |
264 |
Q |
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|||| ||||||||| |||| | |||| | ||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
6196938 |
cttaaagtgcttaactggaaagttgccttggctgaagcagccactatatctggatggcacactcaaacccacaagtaag |
6196860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 37450225 - 37450462
Alignment:
| Q |
9 |
tggtgtttggaagaactggtgaaagtgctgaaatgcagaaaagaccatggtcaagttgttatacctgttttctataaaacaaatccgtctcacataaaaa |
108 |
Q |
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||||||||||||||||| || |||||||| |||| |||||||| ||||||||| |||||||||||||||| |||||| || |||| |||||||||| || |
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| T |
37450225 |
tggtgtttggaagaactcgtcaaagtgctcgaatgtagaaaagatcatggtcaaattgttatacctgttttttataaagcagatccttctcacataagaa |
37450324 |
T |
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| Q |
109 |
atcagactcacagttatgagaaagcatttgcaaaacacgagagagatcttgggaccaaaagtaatgcatccaataaacttatagtgcttaagtggagatc |
208 |
Q |
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| T |
37450325 |
accagaaagccagttatgagactgcattcgcgaaacatgagcgtgagctcgggaccaaagacagcatatccaacaaatctaaagtgcttaaatggaaagc |
37450424 |
T |
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| Q |
209 |
tgcccttgctgaagcagccactatatctggatgggaca |
246 |
Q |
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| T |
37450425 |
tgcccttactgaagcagccaatatatctggatgggaca |
37450462 |
T |
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