View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_14 (Length: 304)
Name: NF8689_low_14
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 286
Target Start/End: Original strand, 41003056 - 41003326
Alignment:
| Q |
31 |
cagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccacattaatggtgttgct |
130 |
Q |
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| T |
41003056 |
cagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccacattaatggtgttgct |
41003155 |
T |
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| Q |
131 |
tccacatgaacaccccaaatcagcaactacaaaagccttgt---------------caccatcaccaccaccaagcttaactttatctagggtttctctc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41003156 |
tccacatgaacaccccaaatcagcaactacaaaagccttgtcaccaccaccaccaccaccaccaccaccaccaagcttaactttatctagggtttctctc |
41003255 |
T |
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| Q |
216 |
aaaaagtgaatcattgatttggcatgtatggcctgcatgtatgtttagcttgaatttttaagcaacatttt |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41003256 |
aaaaagtgaatcattgatttggcatgtatggcctgcatgtatgtttagcttgaatttttaagcaacatttt |
41003326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 31 - 286
Target Start/End: Original strand, 20855396 - 20855664
Alignment:
| Q |
31 |
cagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccacattaatggtgttgct |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20855396 |
cagagaaataggctgaaaattcaggtgggttgcaacctaaagcctcataacgcttaatgatgtgatttatgatcacattcaccacattaatggtgttgct |
20855495 |
T |
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| Q |
131 |
tccacatgaacaccccaaatcagcaactacaaaagccttgt---------caccatcaccaccaccaagcttaactttatctagggtttctctcaaaaag |
221 |
Q |
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| T |
20855496 |
tccacatgaacaccccaaatcagcaactacaaaagccttgtcgccatcaccaccaccaccaccaccaagcttaactttatctagggtttctctcaaaaag |
20855595 |
T |
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| Q |
222 |
tgaatcattgatttggcatgtatggcctgcatgtatgt----ttagcttgaatttttaagcaacatttt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20855596 |
tgaatcattgatttggcatgtatggcctgcatgtatgtttaattagcttgaatttttaagcaacatttt |
20855664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 21558247 - 21558353
Alignment:
| Q |
45 |
gaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccacattaatggtgttgcttccacatgaacacc |
144 |
Q |
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|||||||||||||||||| | ||||| || ||||| || || ||||||| || ||||| |||| || ||||| || ||||| || ||||||||||| | |
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| T |
21558247 |
gaaaattcaggtgggttgaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacatcaacaacattgattgtgttactcccacatgaacaac |
21558346 |
T |
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| Q |
145 |
ccaaatc |
151 |
Q |
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||||||| |
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| T |
21558347 |
ccaaatc |
21558353 |
T |
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