View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8689_low_18 (Length: 259)

Name: NF8689_low_18
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8689_low_18
NF8689_low_18
[»] chr8 (26 HSPs)
chr8 (19-201)||(25117396-25117578)
chr8 (49-169)||(16035746-16035866)
chr8 (71-171)||(4011224-4011324)
chr8 (58-171)||(23023366-23023479)
chr8 (35-105)||(490542-490612)
chr8 (89-171)||(10108954-10109036)
chr8 (35-125)||(16715460-16715550)
chr8 (35-105)||(36545356-36545426)
chr8 (68-239)||(38178298-38178471)
chr8 (35-105)||(44529432-44529502)
chr8 (35-171)||(35643613-35643747)
chr8 (35-111)||(26055622-26055698)
chr8 (35-102)||(1928592-1928659)
chr8 (50-105)||(32931167-32931222)
chr8 (35-105)||(11523728-11523798)
chr8 (51-105)||(27556323-27556377)
chr8 (43-105)||(36565254-36565316)
chr8 (35-105)||(45419442-45419512)
chr8 (35-120)||(18473977-18474062)
chr8 (35-124)||(23492222-23492311)
chr8 (55-124)||(30748651-30748720)
chr8 (58-171)||(39967527-39967640)
chr8 (52-124)||(21425234-21425306)
chr8 (49-105)||(30689942-30689998)
chr8 (35-99)||(41031425-41031489)
chr8 (35-99)||(41031531-41031595)
[»] chr1 (34 HSPs)
chr1 (50-219)||(38868973-38869144)
chr1 (41-239)||(33560869-33561069)
chr1 (36-123)||(49377490-49377577)
chr1 (35-103)||(51584953-51585021)
chr1 (35-171)||(8342889-8343022)
chr1 (35-105)||(22090303-22090373)
chr1 (49-235)||(42501183-42501371)
chr1 (53-171)||(8203157-8203275)
chr1 (35-105)||(41560436-41560506)
chr1 (49-105)||(2694438-2694494)
chr1 (35-175)||(8796346-8796486)
chr1 (49-105)||(28511820-28511876)
chr1 (35-111)||(52073053-52073129)
chr1 (35-82)||(696500-696547)
chr1 (35-105)||(1210952-1211022)
chr1 (61-103)||(7930585-7930627)
chr1 (70-124)||(13827620-13827674)
chr1 (129-171)||(19969311-19969353)
chr1 (35-105)||(25979236-25979306)
chr1 (35-105)||(28090699-28090769)
chr1 (35-105)||(28533674-28533744)
chr1 (35-105)||(29577459-29577529)
chr1 (35-105)||(30202135-30202205)
chr1 (35-101)||(37462881-37462947)
chr1 (35-105)||(42337763-42337833)
chr1 (35-105)||(44941781-44941851)
chr1 (35-105)||(49347398-49347468)
chr1 (117-170)||(4380086-4380139)
chr1 (49-219)||(6025696-6025868)
chr1 (35-124)||(30396734-30396823)
chr1 (90-162)||(15577568-15577640)
chr1 (35-103)||(21769716-21769784)
chr1 (41-105)||(22175352-22175416)
chr1 (36-124)||(38877349-38877437)
[»] chr3 (29 HSPs)
chr3 (35-239)||(46431684-46431886)
chr3 (35-124)||(659713-659802)
chr3 (89-219)||(37598229-37598360)
chr3 (41-104)||(47249303-47249366)
chr3 (35-105)||(40106625-40106695)
chr3 (41-171)||(43308703-43308833)
chr3 (58-165)||(2340745-2340852)
chr3 (59-162)||(49841766-49841869)
chr3 (35-105)||(52139007-52139077)
chr3 (42-171)||(27893230-27893359)
chr3 (30-139)||(32170578-32170687)
chr3 (36-107)||(388268-388339)
chr3 (68-111)||(41971308-41971351)
chr3 (58-124)||(46367415-46367481)
chr3 (35-105)||(54128586-54128656)
chr3 (35-124)||(31337565-31337654)
chr3 (35-99)||(52927853-52927917)
chr3 (89-161)||(55244429-55244501)
chr3 (49-111)||(7278665-7278727)
chr3 (35-105)||(12096710-12096780)
chr3 (35-105)||(30797827-30797897)
chr3 (35-105)||(45486854-45486924)
chr3 (35-105)||(48508442-48508512)
chr3 (35-105)||(48734152-48734222)
chr3 (35-124)||(11284176-11284265)
chr3 (41-105)||(19758094-19758157)
chr3 (49-105)||(29601099-29601155)
chr3 (129-181)||(36820076-36820128)
chr3 (80-124)||(47804713-47804757)
[»] chr7 (26 HSPs)
chr7 (35-171)||(12966157-12966293)
chr7 (55-171)||(22174141-22174257)
chr7 (58-124)||(40008459-40008525)
chr7 (58-171)||(28858186-28858299)
chr7 (53-161)||(40138971-40139079)
chr7 (35-162)||(7220906-7221033)
chr7 (35-105)||(36101782-36101852)
chr7 (87-171)||(21517437-21517521)
chr7 (41-105)||(30814136-30814200)
chr7 (30-105)||(6375075-6375150)
chr7 (41-124)||(30914513-30914596)
chr7 (35-106)||(39812144-39812215)
chr7 (58-105)||(47185836-47185882)
chr7 (35-105)||(11594167-11594237)
chr7 (35-105)||(12841280-12841350)
chr7 (101-171)||(25826553-25826623)
chr7 (35-105)||(28208333-28208403)
chr7 (35-105)||(31682607-31682677)
chr7 (35-105)||(39906377-39906447)
chr7 (35-105)||(40979933-40980003)
chr7 (35-105)||(46355861-46355931)
chr7 (35-104)||(34035159-34035228)
chr7 (35-103)||(34029681-34029749)
chr7 (41-105)||(35906212-35906276)
chr7 (35-111)||(43491509-43491585)
chr7 (35-171)||(45601617-45601753)
[»] chr2 (28 HSPs)
chr2 (35-219)||(33504314-33504501)
chr2 (35-160)||(8197546-8197671)
chr2 (35-160)||(8202306-8202431)
chr2 (41-165)||(3305820-3305944)
chr2 (35-113)||(17429249-17429327)
chr2 (35-241)||(42092586-42092794)
chr2 (41-105)||(18959118-18959182)
chr2 (35-105)||(3866279-3866349)
chr2 (35-105)||(31959728-31959798)
chr2 (35-242)||(38435020-38435229)
chr2 (35-105)||(45543078-45543148)
chr2 (98-163)||(41779178-41779243)
chr2 (35-103)||(11992113-11992181)
chr2 (35-105)||(227396-227466)
chr2 (68-163)||(8491268-8491365)
chr2 (35-105)||(12474932-12475002)
chr2 (49-166)||(15836085-15836203)
chr2 (35-105)||(19863441-19863511)
chr2 (35-105)||(19867773-19867843)
chr2 (35-105)||(19872674-19872744)
chr2 (35-105)||(28508885-28508955)
chr2 (35-105)||(30306239-30306309)
chr2 (35-105)||(35643155-35643225)
chr2 (35-165)||(43832245-43832375)
chr2 (42-171)||(19234996-19235125)
chr2 (35-104)||(38328375-38328444)
chr2 (35-107)||(12141749-12141821)
chr2 (190-242)||(43260472-43260524)
[»] chr6 (9 HSPs)
chr6 (35-106)||(21089603-21089674)
chr6 (35-124)||(4245877-4245966)
chr6 (41-171)||(6293403-6293533)
chr6 (35-171)||(34510-34646)
chr6 (35-105)||(12890782-12890852)
chr6 (35-105)||(34934835-34934905)
chr6 (59-111)||(7267414-7267466)
chr6 (49-105)||(7513009-7513065)
chr6 (41-105)||(30856739-30856803)
[»] chr4 (36 HSPs)
chr4 (35-124)||(22420722-22420811)
chr4 (35-124)||(29209180-29209269)
chr4 (35-164)||(37042669-37042798)
chr4 (52-171)||(40018211-40018330)
chr4 (35-141)||(31339695-31339801)
chr4 (69-151)||(32339720-32339802)
chr4 (70-171)||(47147514-47147613)
chr4 (35-124)||(40932929-40933018)
chr4 (35-124)||(51841203-51841292)
chr4 (35-105)||(436436-436506)
chr4 (35-165)||(26024855-26024985)
chr4 (35-101)||(47372915-47372981)
chr4 (35-105)||(48174098-48174168)
chr4 (35-109)||(49738555-49738629)
chr4 (60-165)||(6843762-6843867)
chr4 (68-165)||(38903756-38903853)
chr4 (44-104)||(1380578-1380638)
chr4 (68-124)||(48154885-48154941)
chr4 (35-175)||(54470344-54470484)
chr4 (35-110)||(6957800-6957875)
chr4 (35-110)||(20192235-20192309)
chr4 (51-106)||(40268292-40268347)
chr4 (35-122)||(49686883-49686970)
chr4 (89-171)||(934490-934572)
chr4 (35-105)||(8286646-8286716)
chr4 (35-105)||(12494870-12494940)
chr4 (35-105)||(19154868-19154938)
chr4 (35-105)||(23906302-23906372)
chr4 (46-108)||(27338403-27338465)
chr4 (35-105)||(31959819-31959889)
chr4 (35-105)||(52569520-52569590)
chr4 (58-171)||(21214614-21214727)
chr4 (35-151)||(25574985-25575101)
chr4 (49-105)||(35690478-35690534)
chr4 (41-105)||(37798058-37798122)
chr4 (49-165)||(47372798-47372914)
[»] chr5 (23 HSPs)
chr5 (50-239)||(7359281-7359471)
chr5 (49-171)||(27998582-27998704)
chr5 (35-110)||(20456975-20457050)
chr5 (35-105)||(4496591-4496661)
chr5 (36-105)||(5558348-5558417)
chr5 (44-103)||(1275473-1275532)
chr5 (41-124)||(15588401-15588484)
chr5 (69-124)||(41808110-41808165)
chr5 (35-105)||(11675737-11675807)
chr5 (35-105)||(18855814-18855884)
chr5 (35-105)||(29816589-29816659)
chr5 (35-105)||(30213782-30213852)
chr5 (49-171)||(30588588-30588710)
chr5 (35-105)||(38132543-38132613)
chr5 (35-105)||(43557838-43557908)
chr5 (35-99)||(8081968-8082033)
chr5 (35-96)||(9234102-9234163)
chr5 (41-105)||(2915507-2915571)
chr5 (41-105)||(6859588-6859652)
chr5 (35-103)||(11002426-11002494)
chr5 (41-105)||(15252755-15252819)
chr5 (35-171)||(38684621-38684757)
chr5 (41-105)||(38685174-38685238)
[»] scaffold0373 (1 HSPs)
scaffold0373 (60-165)||(2331-2436)
[»] scaffold1318 (1 HSPs)
scaffold1318 (35-105)||(538-608)
[»] scaffold0168 (1 HSPs)
scaffold0168 (35-105)||(28894-28964)
[»] scaffold0157 (1 HSPs)
scaffold0157 (35-105)||(25537-25607)
[»] scaffold1259 (1 HSPs)
scaffold1259 (58-102)||(1550-1594)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-111)||(82919-82995)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 25117578 - 25117396
Alignment:
Q  19 acatgcaaacgacgagaacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctcta 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25117578 acatgcaaacgacgagaacaagcaagcctcatcccacttaatggggtctgctacatggatcaaacaatgtcataatgttctatcatatatcatttctcta 25117479  T
Q  119 tccaacctggtaatctctagatatttgttaataatttctcttatagtctttcttggtacttctgcctctgttgattttactac 201  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  25117478 tccaacctggtaatctctagatatttgttaataatttctcgtatagtttttcttggtacttctgcctctattgattttactac 25117396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 16035746 - 16035866
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgtta 148  Q
    |||||||| ||||||||| |||||||  ||||||  | |||||||||||||| |||| | ||| | || |||||||   ||||||||||||||||| |||    
T  16035746 atcccactaagtggggtcagctacatgaatcaaattacgtcataatgttctaccataaaccatatttcgatccaactaagtaatctctagatatttctta 16035845  T
Q  149 ataatttctcttatagtcttt 169  Q
    | | |||||||||||||||||    
T  16035846 acagtttctcttatagtcttt 16035866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 4011324 - 4011224
Alignment:
Q  71 acattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtctttc 170  Q
    |||||||||||||||||||||||||||||||| |||  ||  ||| ||||||||    |||||| ||||| ||| |||||| ||||||||||||| ||||    
T  4011324 acattgatcaaacaatgtcataatgttctatcgtattccacatctttatccaactcattaatctttagatctttcttaatagtttctcttatagtttttc 4011225  T
Q  171 t 171  Q
    |    
T  4011224 t 4011224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 23023479 - 23023366
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttct 157  Q
    ||||||||| | ||||| |||||||| | |||||||| |||||||||||||||| |  |||||||||    |||||| ||||| ||| ||| || |||||    
T  23023479 agtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatccaactcattaatctgtagatctttcttagtagtttct 23023380  T
Q  158 cttatagtctttct 171  Q
    |||||||| |||||    
T  23023379 cttatagtttttct 23023366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 490612 - 490542
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||||||||||||||||    
T  490612 aacaaacaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcata 490542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 10109036 - 10108954
Alignment:
Q  89 cataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtctttct 171  Q
    ||||||||||||||||||| ||| |||||||| |||  | |||||||||||| ||| ||| || |||||||||| || |||||    
T  10109036 cataatgttctatcatataacatatctctatcaaactcgttaatctctagatctttcttattagtttctcttatggtttttct 10108954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 16715550 - 16715460
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacc 125  Q
    ||||| ||||||| |||||||| ||  ||||| ||||| | |||||||||  | ||||||||||||||||||||||| || ||||| ||||    
T  16715550 aacaatcaagcctaatcccactaagcagggtcggctacgtggatcaaacaccgccataatgttctatcatatatcatatccctatcaaacc 16715460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 36545426 - 36545356
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | |||||| ||||||||||||    
T  36545426 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcata 36545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 38178298 - 38178471
Alignment:
Q  68 gctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtct 167  Q
    ||||||| ||||| | |||| | ||| ||| | ||||||||||| ||||||||||||    |||| ||||| | |||||||||| ||||||||||||| |    
T  38178298 gctacatggatcagataatgccctaaggttttgtcatatatcatatctctatccaactcattaatgtctaggtctttgttaatagtttctcttatagttt 38178397  T
Q  168 ttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactcgccctactacagaatctaca 239  Q
    |||| ||  | | ||| |||||   ||||| ||||  ||| ||||||||||||| || ||||||| ||||||||    
T  38178398 ttctaggtcttcctctacctctagcgatttgactatcctccatctgatctactctccttactacaaaatctaca 38178471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 44529502 - 44529432
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  ||| |||| ||||||||||||    
T  44529502 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgatgccatagtgttctatcata 44529432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 35643613 - 35643747
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||| | |||||||| ||||||||  ||||||| |||||||  ||| ||   |||||||||||| | ||| | || |||||||    ||||||    
T  35643613 aacaaccaagcattatcccactaagtggggtaggctacatggatcaaaatatggcag--tgttctatcataaaccatatttcgatccaactcattaatct 35643710  T
Q  135 ctagatatttgttaataatttctcttatagtctttct 171  Q
    |||||| ||| |||||||||||||||||||| |||||    
T  35643711 ctagatctttcttaataatttctcttatagtttttct 35643747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 26055698 - 26055622
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    ||||| ||||||| |||||||| |||||| || ||||||| ||||||||    ||||||||||| ||||||||||||    
T  26055698 aacaaccaagccttatcccactaagtgggatcggctacatggatcaaacgccatcataatgttcaatcatatatcat 26055622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 1928592 - 1928659
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatc 102  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | ||||||||||||||    
T  1928592 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatc 1928659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 32931222 - 32931167
Alignment:
Q  50 tcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| ||||||||| ||||||| |||||||  ||| |||||||||||||||||    
T  32931222 tcccactaagtggggtcggctacatggatcaaattatgccataatgttctatcata 32931167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 11523728 - 11523798
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  11523728 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 11523798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 27556323 - 27556377
Alignment:
Q  51 cccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||| ||||||||| ||||||| |||||||  ||| |||||||||||||||||    
T  27556323 cccactaagtggggtcggctacatggatcaaattatgccataatgttctatcata 27556377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 36565254 - 36565316
Alignment:
Q  43 agcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| |||||||| ||||||||| ||||||| ||||||| || | |||| ||||||||||||    
T  36565254 agccttatcccactaagtggggtcggctacatggatcaaataacgccatagtgttctatcata 36565316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 45419512 - 45419442
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  |   |||||||||||||||||    
T  45419512 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctatcata 45419442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 18473977 - 18474062
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatc 120  Q
    ||||| |||| || |||||||| ||||| ||| |||||||  ||||||| | ||||||||||||||||| ||| ||| ||| ||||    
T  18473977 aacaaccaagtcttatcccactaagtggtgtcggctacatgaatcaaacgaagtcataatgttctatcaaataccatatctatatc 18474062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 23492311 - 23492222
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||||| ||| |||| ||||||||| ||||||| ||| |||  |   |||| |||||||||||||||||| | ||||||||||    
T  23492311 aacaaacaagccttatctcactaagtggggtcggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatccaac 23492222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 30748720 - 30748651
Alignment:
Q  55 cttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    |||||||||||| ||||||| |||||||  |  ||||||||||| || ||||||||| | ||||||||||    
T  30748720 cttagtggggtcagctacatggatcaaatgacatcataatgttcaattatatatcatatttctatccaac 30748651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 39967527 - 39967640
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttct 157  Q
    |||||| || ||||||| |||||||| | | |||||||||||| |||| |  || |||| |||||||    ||||| |||||| ||| |||||| |||||    
T  39967527 agtgggatcggctacatggatcaaactacgccataatgttctaacataaactatatctcaatccaactcattaatcgctagatctttcttaatagtttct 39967626  T
Q  158 cttatagtctttct 171  Q
    |||||||| |||||    
T  39967627 cttatagtttttct 39967640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 21425306 - 21425234
Alignment:
Q  52 ccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||| ||||||||||||| |||||||  ||| ||||||| ||||||||| ||||| | || |||||||    
T  21425306 ccactaagtagggtctgctacatggatcaaattatgccataatggtctatcataaatcatatttcgatccaac 21425234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 30689998 - 30689942
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| ||||||||| ||||||| |||||||  | ||||||||||| |||||||    
T  30689998 atcccactaagtggggtcggctacatggatcaaattacgtcataatgttatatcata 30689942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 41031425 - 41031489
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttct 99  Q
    ||||| ||||||| |||||||| ||||||||| |||| || |||||||  || ||||||||||||    
T  41031425 aacaaccaagccttatcccactaagtggggtcggctatatggatcaaattatctcataatgttct 41031489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 41031531 - 41031595
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttct 99  Q
    ||||| ||||||| |||||||| ||||||||| |||| || |||||||  || ||||||||||||    
T  41031531 aacaaccaagccttatcccactaagtggggtcggctatatggatcaaattatctcataatgttct 41031595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 38869144 - 38868973
Alignment:
Q  50 tcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaa 149  Q
    ||||||| ||||||||| ||||||| |||||||| | | ||||||||||||||||||| ||| | |||||||||||   ||||| |||||| ||| ||||    
T  38869144 tcccactaagtggggtcggctacatggatcaaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttcttaa 38869045  T
Q  150 taatttctcttatagtctttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactc 219  Q
    |||||||||||||||| ||||| ||  | |||||||||||  |||||| ||||| ||| |||| ||||||||    
T  38869044 taatttctcttatagtttttctaggtcttcttctgcctctaatgatttgactaccctccatctaatctactc 38868973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 33560869 - 33561069
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagat 140  Q
    ||||||| |||||||| ||| ||||  ||||||| |||||||||||||||||||||||| | ||||| ||| | | ||||||||  | ||||||||||||    
T  33560869 caagccttatcccactaagtagggttggctacatggatcaaacaatgtcataatgttctctgatataccatatttatatccaactcgctaatctctagat 33560968  T
Q  141 atttgttaataatttctcttatagtctttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactcgccctactacagaatctac 238  Q
     ||  |||||| |||| |||| ||| ||||| ||  | | |||||||||  |||||| ||||| ||| |||  |||||||| || |||||||||||||||    
T  33560969 cttacttaatagtttcccttacagtttttctaggacttcctctgcctctagtgatttgactaccctccatcatatctactctccttactacagaatctac 33561068  T
Q  239 a 239  Q
    |    
T  33561069 a 33561069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 49377577 - 49377490
Alignment:
Q  36 acaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaa 123  Q
    |||| ||||||| |||||||| | ||| ||| ||||||| |||||||||  | |||||||||||||||||||||||||| ||||||||    
T  49377577 acaaccaagccttatcccactaactggagtcggctacatggatcaaacaccgccataatgttctatcatatatcatttccctatccaa 49377490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 51585021 - 51584953
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    ||||| ||||||| |||| ||| |||||||||||||||||  |||||||||||||||| ||||||||||    
T  51585021 aacaaccaagccttatcctactaagtggggtctgctacatgaatcaaacaatgtcatagtgttctatca 51584953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 8342889 - 8343022
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| |||||| || | ||||||||||||||   |||||||||||| |||| |||  || | ||||||||||    ||||||    
T  8342889 aacaatcaagccttatcccactaagtgggatcagatacattgatcaaac---gtcataatgttccatcaaatactatatttctatccaactcattaatct 8342985  T
Q  135 ctagatatttgttaataatttctcttatagtctttct 171  Q
    |||||| ||| |||||  ||||||||||||| |||||    
T  8342986 ctagatctttattaattgtttctcttatagtttttct 8343022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 22090373 - 22090303
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||||||||||||| ||||||| |||||||  | |||||| ||||||||||||    
T  22090373 aacaaccaagccttatcccacttagtggggtcggctacatggatcaaatgacgtcatagtgttctatcata 22090303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 42501371 - 42501183
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgtta 148  Q
    |||||||| ||| ||||| ||||||| ||| |||| | |   ||||||||||||||||  ||| | ||||||||||    |||||| ||||| ||| |||    
T  42501371 atcccactaagtagggtcggctacatggattaaacgacgctgtaatgttctatcatattccatatttctatccaactcattaatctatagatctttctta 42501272  T
Q  149 ataatttctcttatagtctttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactcgccctactacagaatc 235  Q
    ||||||||||||||||| ||||| ||  | | ||| |||||  |||||| ||||| ||| |||||| |||||| || | ||||||||||    
T  42501271 ataatttctcttatagtttttctaggttttcctctacctctaatgatttgactaccctccatctgaactactctcctttctacagaatc 42501183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 8203157 - 8203275
Alignment:
Q  53 cacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataa 152  Q
    |||| ||||||||| ||||||| ||| || ||| | |||||||||||||| | ||||||  |||  ||||||    |||||||||||| ||| ||||||     
T  8203157 cactaagtggggtcggctacatggataaatcaacgccataatgttctatcttctatcatacctccgtccaactcattaatctctagatcttttttaatag 8203256  T
Q  153 tttctcttatagtctttct 171  Q
    ||||||||||||| |||||    
T  8203257 tttctcttatagtttttct 8203275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 41560506 - 41560436
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||||||||||||||||    
T  41560506 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcata 41560436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 2694438 - 2694494
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| |||||||||||||| || |||||||| ||  |||||||||||||||||    
T  2694438 atcccactaagtggggtctgctaaatggatcaaactataccataatgttctatcata 2694494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 8796486 - 8796346
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| ||| |||  | | ||||||||||||||||| | ||| | || ||||||     |||| |    
T  8796486 aacaaccaagccttatcccactaagtggggtcggctacatggattaaattacgccataatgttctatcataaaccatatttcaatccaagtcattaatat 8796387  T
Q  135 ctagatatttgttaataatttctcttatagtctttcttggt 175  Q
    |||||| ||| |||||| ||||||||| ||| ||| |||||    
T  8796386 ctagatctttcttaatagtttctcttaaagtttttattggt 8796346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 28511820 - 28511876
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| ||||||||| |||||||||||||||  | | |||||||||||||||||    
T  28511820 atcccactaagtggggtcggctacattgatcaaattacgccataatgttctatcata 28511876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 52073053 - 52073129
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    ||||| ||||||| |||||||  ||||||||| ||||||| |||||| |   | |||||||||||||||||||||||    
T  52073053 aacaatcaagccttatcccaccaagtggggtcggctacatggatcaatcgccgccataatgttctatcatatatcat 52073129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 696547 - 696500
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaa 82  Q
    ||||| ||||||| |||||||| ||||||||| |||||||||||||||    
T  696547 aacaaccaagccttatcccactaagtggggtcggctacattgatcaaa 696500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 1211022 - 1210952
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  1211022 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 1210952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 7930585 - 7930627
Alignment:
Q  61 ggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||    
T  7930585 ggggtcagctacatggatcaaacaatgtcataatgttccatca 7930627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 13827620 - 13827674
Alignment:
Q  70 tacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||| |||||| ||||||||||||||||||||| ||| | ||||||||||    
T  13827620 tacatagatgaaacaacgtcataatgttctatcatataccatatttctatccaac 13827674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 19969311 - 19969353
Alignment:
Q  129 taatctctagatatttgttaataatttctcttatagtctttct 171  Q
    |||||||||||| |||||||||| ||||||||||||| |||||    
T  19969311 taatctctagatctttgttaatagtttctcttatagtttttct 19969353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 25979236 - 25979306
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  25979236 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 25979306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 28090699 - 28090769
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| |||| || |||||||| ||||||||| ||||||| |||||||  | | |||||||||||||||||    
T  28090699 aacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcata 28090769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 28533744 - 28533674
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| |||| || |||||||| ||||||||| ||||||| |||||||  | |||||| ||||||||||||    
T  28533744 aacaaccaagtcttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcata 28533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 29577529 - 29577459
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  29577529 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 29577459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 30202135 - 30202205
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  30202135 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 30202205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 37462881 - 37462947
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctat 101  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||||||||||||    
T  37462881 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctat 37462947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 42337833 - 42337763
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||  ||||||| |||||||  ||| |||| ||||||||||||    
T  42337833 aacaaccaagccttatcccactaagtggggttggctacatggatcaaatgatgccatagtgttctatcata 42337763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 44941781 - 44941851
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  44941781 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcata 44941851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 49347398 - 49347468
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  49347398 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 49347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 4380139 - 4380086
Alignment:
Q  117 tatccaacctggtaatctctagatatttgttaataatttctcttatagtctttc 170  Q
    |||||||| || |||||||||||| ||| || |||||| |||||||||||||||    
T  4380139 tatccaacttgttaatctctagatttttcttgataattcctcttatagtctttc 4380086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 6025868 - 6025696
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgtta 148  Q
    |||||||| |||||  || ||||||| |||||||  | | ||| ||||||||||| ||| ||| | ||||||||||    |||||||||||| ||| |||    
T  6025868 atcccactaagtggaatcggctacatggatcaaatgacgccatcatgttctatcagataccatatttctatccaactcattaatctctagatctttttta 6025769  T
Q  149 ataatttctcttatagtctttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactc 219  Q
     || | ||||||||||| ||||| ||  | | |||||||||  |||||| ||||| ||  |||||||||||||    
T  6025768 ctagtatctcttatagtttttctaggtcttcctctgcctctagtgatttgactaccctacatctgatctactc 6025696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 30396734 - 30396823
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||||| |||||||| ||||||||  ||||||  ||||||||     ||||||||||||||||||||| | || |||||||||    
T  30396734 aacaaccaagccttatcccactaagtggggttggctacacggatcaaacgccaccataatgttctatcatatatcgtatccctatccaac 30396823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 15577640 - 15577568
Alignment:
Q  90 ataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttat 162  Q
    |||||||||||||| ||||||| ||||||||||||    ||||||||| ||  || |||||| ||||||||||    
T  15577640 ataatgttctatcaaatatcatatctctatccaactcattaatctctatatccttcttaatagtttctcttat 15577568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 21769716 - 21769784
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    ||||| ||||||| ||| |||| ||||||||| ||||||| |||||||  | | |||||||||||||||    
T  21769716 aacaaccaagccttatcacactaagtggggtcggctacatggatcaaattacgccataatgttctatca 21769784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 22175416 - 22175352
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||   |  |||||||||||||||||    
T  22175416 caagccttatcccactaagtggggtcggctacatggatcaaattctaccataatgttctatcata 22175352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 38877349 - 38877437
Alignment:
Q  36 acaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    |||| ||||||| |||||||| |||||| || ||||||| |||||||  | | |||||||||||||| ||||  || || |||||||||    
T  38877349 acaaccaagccttatcccactaagtgggttcggctacatggatcaaatgacgccataatgttctatcgtatactatatccctatccaac 38877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 46431684 - 46431886
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| ||||||||  || |||| |||||||| | | |  ||||||| ||||||||| || ||||||||||||    ||||||    
T  46431684 aacaaccaagccttatcccactaagtggggttggcgacatggatcaaacgacgcctcaatgttccatcatatataatatctctatccaactcattaatct 46431783  T
Q  135 ctagatatttgttaataatttctcttatagtctttcttggtacttctgcctctgttgattttactacgctcaatctgatctactcgccctactacagaat 234  Q
    |||||| ||| |||||| ||||||||||||| ||||| | |   |||||||||  |||||| | ||  ||| |||| |||||||| || |||||||||||    
T  46431784 ctagatcttttttaatagtttctcttatagtttttctagtt--ctctgcctctagtgatttgagtatcctccatcttatctactctccttactacagaat 46431881  T
Q  235 ctaca 239  Q
    |||||    
T  46431882 ctaca 46431886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 659802 - 659713
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||||| | |||||| ||||||||| ||||||| ||||||||| || |||||||||||||||||||| || || |||||||||    
T  659802 aacaaccaagccttaccccactaagtggggtcggctacatggatcaaacactgccataatgttctatcatatataatatccctatccaac 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 37598229 - 37598360
Alignment:
Q  89 cataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtctttcttggta--cttctgcctc 186  Q
    |||||||||||||||||||||||  | |||||||||    |||||||||||||| | |||||| ||||||||| ||| ||||| |||   ||||||||||    
T  37598229 cataatgttctatcatatatcatacccctatccaactcattaatctctagatatatcttaatagtttctctta-agtttttctaggtcatcttctgcctc 37598327  T
Q  187 tgttgattttactacgctcaatctgatctactc 219  Q
    || |||||| ||||||||  |||||||||||||    
T  37598328 tggtgatttaactacgcttcatctgatctactc 37598360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 47249303 - 47249366
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcat 104  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||  || |||||||||||||    
T  47249303 caagcctcatcacactaagtggggtctgctacattgatcaaacaataccaaaatgttctatcat 47249366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 40106625 - 40106695
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| |||||||||  ||||||||||||||  |||||||||||||||||||||    
T  40106625 aacaaccaagccttatcccactaagtggggtccactacattgatcaaattatgtcataatgttctatcata 40106695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 43308833 - 43308703
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagat 140  Q
    |||||||||||||||  ||||||||  ||||||| |||||| |   |  || ||||||||||||||||||| ||||||||||||    ||||||||||||    
T  43308833 caagcctcatcccacaaagtggggttggctacatggatcaaccggcgcaattatgttctatcatatatcatatctctatccaactgattaatctctagat 43308734  T
Q  141 atttgttaataatttctcttatagtctttct 171  Q
     ||| |||||| |||||||| |||| |||||    
T  43308733 ttttcttaatagtttctcttgtagtttttct 43308703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 2340745 - 2340852
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttct 157  Q
    ||||||||  ||| ||| |||||||||| | |||||||||||||||||||||||| | || ||| ||    |||||||||||| ||| |||||| |||||    
T  2340745 agtggggttggcttcatggatcaaacaacgccataatgttctatcatatatcattaccctctccgactcattaatctctagatctttcttaatagtttct 2340844  T
Q  158 cttatagt 165  Q
    ||||||||    
T  2340845 cttatagt 2340852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 49841869 - 49841766
Alignment:
Q  59 gtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctc 158  Q
    |||||||| ||||||| |||||||  ||| ||||||||||||||||||| ||| | || |||||||    |||||| ||||| |||||||||| ||||||    
T  49841869 gtggggtcagctacatggatcaaattatgccataatgttctatcatataccatatttcgatccaactcattaatctttagatctttgttaatagtttctc 49841770  T
Q  159 ttat 162  Q
    ||||    
T  49841769 ttat 49841766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 52139077 - 52139007
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| ||||||| || |||||| ||||||||||||    
T  52139077 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaataacgtcatagtgttctatcata 52139007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 27893359 - 27893230
Alignment:
Q  42 aagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagata 141  Q
    |||||| |||||||| |||||| || |||||||  ||||||||||| |||| |||||| ||| | ||||| ||| | ||||||    |||||||||| |     
T  27893359 aagccttatcccactaagtgggatcggctacatgaatcaaacaatgccatagtgttctttcaaaaatcatgtctttctccaactcattaatctctaggtc 27893260  T
Q  142 tttgttaataatttctcttatagtctttct 171  Q
     || |||||| |||||||||||||||||||    
T  27893259 ctttttaatagtttctcttatagtctttct 27893230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 32170687 - 32170578
Alignment:
Q  30 acgagaacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggt 129  Q
    |||| ||||| ||||| | ||| |||| ||||||||| ||||||| |||||||  ||||||||||||| ||||||| | ||| | |||||||||| |  |    
T  32170687 acgacaacaaccaagctttatctcactaagtggggtcggctacatggatcaaattatgtcataatgttatatcatagaccatatttctatccaacttatt 32170588  T
Q  130 aatctctaga 139  Q
    ||||||||||    
T  32170587 aatctctaga 32170578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 388268 - 388339
Alignment:
Q  36 acaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatata 107  Q
    |||| ||||||| |||||||| ||||||||  |||||||||||||||  | ||||||||| |||||||||||    
T  388268 acaaccaagccttatcccactaagtggggttggctacattgatcaaattacgtcataatgctctatcatata 388339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 41971308 - 41971351
Alignment:
Q  68 gctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  41971308 gctacatggatcaaacaacgtcataatgttctatcatatatcat 41971351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 46367415 - 46367481
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||||||  ||||||| |||||||| | ||||||||||||||||||||||||| ||  ||||||||    
T  46367415 agtggggtaggctacatggatcaaacgacgtcataatgttctatcatatatcatatccttatccaac 46367481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 54128656 - 54128586
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| |||||||||  |||||| |||||||  ||| |||||||||||||||||    
T  54128656 aacaaccaagccttatcccactaagtggggtcgcctacatggatcaaattatgccataatgttctatcata 54128586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 31337565 - 31337654
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||| | || ||||| |||| |||| | || || |||||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  31337565 aacaaccaagctttataccactaagtgaggtcggttaaatagatcaaacaatgtcataatgttctatcaaataccatatttctatccaac 31337654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 52927853 - 52927917
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttct 99  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  ||| |||||||||||    
T  52927853 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattatgccataatgttct 52927917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 55244501 - 55244429
Alignment:
Q  89 cataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctctta 161  Q
    ||||||||||||||||||| ||| | ||||||||||    |||||||||||| ||| |||| |||||||||||    
T  55244501 cataatgttctatcatataccatatttctatccaactcattaatctctagatttttcttaagaatttctctta 55244429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 7278727 - 7278665
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    |||||||| ||||||||| ||||||| |||||||  | || |||||||||||| |||||||||    
T  7278727 atcccactaagtggggtcggctacatggatcaaatgacgttataatgttctataatatatcat 7278665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 12096710 - 12096780
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  12096710 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 12096780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 30797827 - 30797897
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| || ||||| ||||||||| | ||||| |||||||  | |||||||||||||||||||    
T  30797827 aacaaccaagccttattccactaagtggggtcggttacatagatcaaattacgtcataatgttctatcata 30797897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 45486854 - 45486924
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||| | |||||||| ||||||| | ||||||| |||||||  ||| |||||||||||||||||    
T  45486854 aacaaccaagctttatcccactaagtggggccggctacatggatcaaattatgccataatgttctatcata 45486924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 48508512 - 48508442
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  48508512 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcata 48508442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 48734152 - 48734222
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| ||||||   | | |||||||||||||||||    
T  48734152 aacaatcaagccttatcccactaagtggggtcagctacatggatcaacttacgccataatgttctatcata 48734222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 11284265 - 11284176
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||||||||||| ||| |||| || |||||  ||||||| |||||||| |||  ||||||||| |||||||| ||| | | ||||||||    
T  11284265 aacaagcaagccttatctcactaagcggggttggctacatggatcaaacgatgcaataatgttcaatcatataccatatttatatccaac 11284176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 19758157 - 19758094
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||  ||  |||||||||||||||||    
T  19758157 caagccttatcccactaagtggggtc-gctacatggatcaaattataccataatgttctatcata 19758094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 29601155 - 29601099
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| ||||||||| ||||||| |||||||  |  ||||||||||||||||||    
T  29601155 atcccactaagtggggtcagctacatggatcaaattacatcataatgttctatcata 29601099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 36820076 - 36820128
Alignment:
Q  129 taatctctagatatttgttaataatttctcttatagtctttcttggtacttct 181  Q
    |||||||||||| ||| |||||| ||||||||||||| ||||| |||| ||||    
T  36820076 taatctctagatctttcttaatagtttctcttatagtttttctaggtatttct 36820128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 47804713 - 47804757
Alignment:
Q  80 aaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    |||||||| ||||||||||||||||||| ||| ||||||| ||||    
T  47804713 aaacaatgccataatgttctatcatatagcatgtctctattcaac 47804757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 12966293 - 12966157
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| |||||| || |||||||  ||||||||||| ||||||| | ||||||||| ||| | |||||||||     ||||||    
T  12966293 aacaaccaagccttatcccactaagtgggatcggctacatgaatcaaacaatggcataatgatttatcatataccatatttctatccaaatcattaatct 12966194  T
Q  135 ctagatatttgttaataatttctcttatagtctttct 171  Q
    ||| |||||| |||||| ||||||||||||| |||||    
T  12966193 ctaaatatttcttaatagtttctcttatagtttttct 12966157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 22174257 - 22174141
Alignment:
Q  55 cttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatt 154  Q
    |||||||||||| ||||||| |||||||||| | ||||||||||||||| ||| ||| | |||||| ||     |||||||||||| |||||| ||| ||    
T  22174257 cttagtggggtcggctacatggatcaaacaacgccataatgttctatcacataccatatttctatctaattcattaatctctagatctttgtttatagtt 22174158  T
Q  155 tctcttatagtctttct 171  Q
    ||||||||||| |||||    
T  22174157 tctcttatagtttttct 22174141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 40008459 - 40008525
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    |||| |||| ||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  40008459 agtgaggtcagctacatggatcaaacaacgacataatgttctatcatatatcatgtctctatccaac 40008525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 171
Target Start/End: Complemental strand, 28858299 - 28858186
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttct 157  Q
    ||||||||| |||||||||||||||  |  |||||| |||||||||||||  || | |||||||||| |  |||||||||||| ||| |||||| ||| |    
T  28858299 agtggggtcggctacattgatcaaatgagatcataacgttctatcatataaaatatttctatccaacttattaatctctagatctttcttaatagtttgt 28858200  T
Q  158 cttatagtctttct 171  Q
    |||||||| |||||    
T  28858199 cttatagtttttct 28858186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 40138971 - 40139079
Alignment:
Q  53 cacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataa 152  Q
    |||| ||||||||||||||||| |||||||  | |||||||| ||||||||||| |||| | |||||| |||    |||||||||||| ||| ||||||     
T  40138971 cactaagtggggtctgctacatggatcaaatgacgtcataatattctatcatatgtcatatttctatcaaacgcattaatctctagatctttcttaatag 40139070  T
Q  153 tttctctta 161  Q
    |||||||||    
T  40139071 tttctctta 40139079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 7221033 - 7220906
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |  ||||| ||||||||  ||||||| |||||||  |||||||||| |||||||| |||| || ||| ||||||||    ||||||    
T  7221033 aacaaccaagccttacaccactaagtggggttggctacatggatcaaatgatgtcataattttctatcacatattatatctttatccaacacattaatct 7220934  T
Q  135 ctagatatttgttaataatttctcttat 162  Q
    ||| || ||||||||||||||| |||||    
T  7220933 ctaaatctttgttaataatttcacttat 7220906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 36101782 - 36101852
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| |||||||||  |||||| |||||||  | |||||||||||||||||||    
T  36101782 aacaaccaagccttatcccactaagtggggtcaactacatggatcaaattacgtcataatgttctatcata 36101852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 21517437 - 21517521
Alignment:
Q  87 gtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtctttct 171  Q
    ||||||||||| ||||||| ||||| | |  ||||||| |  ||||||||| |||||| |||||| ||||||||||||| |||||    
T  21517437 gtcataatgttatatcataaatcatatttggatccaacttattaatctctaaatattttttaatagtttctcttatagtttttct 21517521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 30814136 - 30814200
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||  | || ||||||||||||||||    
T  30814136 caagcctcttcccactaagtggggtcggctacatggatcaaattacgtgataatgttctatcata 30814200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 6375150 - 6375075
Alignment:
Q  30 acgagaacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||| ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  6375150 acgacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 6375075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 30914513 - 30914596
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||||| |||||||| ||||||||  || | || ||||||||  || ||||| ||||||||||||||||| || |||||||||    
T  30914513 caagccttatcccactaagtggggttggcaatatggatcaaacgctgccataaagttctatcatatatcatatccctatccaac 30914596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 39812215 - 39812144
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatat 106  Q
    ||||| ||||||| |||||||| ||||||| |  |||||| |||||||| |  |||||||||||||||||||    
T  39812215 aacaaccaagccttatcccactaagtggggccaactacatggatcaaacgacatcataatgttctatcatat 39812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 47185836 - 47185882
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||    
T  47185836 agtggggtcggcta-atagatcaaacaatgtcataatgttctatcata 47185882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 11594237 - 11594167
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  11594237 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 11594167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 12841280 - 12841350
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  12841280 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 12841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 25826553 - 25826623
Alignment:
Q  101 tcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtctttct 171  Q
    ||||||||||| || ||||||||| |  |||| ||||| ||||| |||||||||| ||||||||| |||||    
T  25826553 tcatatatcatatcactatccaacttattaatatctagctatttcttaataatttatcttatagtttttct 25826623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 28208333 - 28208403
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  28208333 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 28208403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 31682607 - 31682677
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  31682607 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 31682677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 39906377 - 39906447
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  39906377 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 39906447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 40979933 - 40980003
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  40979933 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcata 40980003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 46355861 - 46355931
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| ||| |||| ||||||||| ||||||| |||||||  ||| |||| ||||||||||||    
T  46355861 aacaaccaagccttatctcactaagtggggtcggctacatggatcaaatgatggcatagtgttctatcata 46355931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 34035159 - 34035228
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcat 104  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| |||||||||||    
T  34035159 aacaaccaagcctaatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcat 34035228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 34029681 - 34029749
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    ||||| ||||||| ||||||||| |||||||  ||||||| |||||||  | | |||||||||||||||    
T  34029681 aacaaccaagccttatcccacttggtggggttggctacatggatcaaattacgccataatgttctatca 34029749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 35906212 - 35906276
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  35906212 caagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 35906276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 43491585 - 43491509
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| ||| |||  |  ||||| |||||||||||| |||||    
T  43491585 aacaaccaagccttatcccactaagtggggtcggctacatggatgaaattacatcatagtgttctatcataaatcat 43491509  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 45601753 - 45601617
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| |||| | || ||||||| |||||||  |   |||| |||||||||||| ||||| | |  |||||||    ||||||    
T  45601753 aacaaccaagccttatcccactaagtgagttcagctacatggatcaaattacaccatagtgttctatcataaatcatattttgatccaactcattaatct 45601654  T
Q  135 ctagatatttgttaataatttctcttatagtctttct 171  Q
    |||||| ||| |||||  ||||||||||||| |||||    
T  45601653 ctagatctttcttaatggtttctcttatagtttttct 45601617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 33504501 - 33504314
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggt-aatc 133  Q
    ||||| ||||||| |||||||| ||||||||| |||| || |||||||  | | ||||||||||||||||||| ||| | || ||||||| |  | ||||    
T  33504501 aacaaccaagccttatcccactaagtggggtcggctagatggatcaaattacgccataatgttctatcatataccatatttcaatccaacttattaaatc 33504402  T
Q  134 tctagatatttgttaataatttctcttatagtctttcttggtact--tctgcctctgttgattttactacgctcaatctgatctactc 219  Q
    ||||||| ||| |||||| ||||||||||||| ||||| |||  |  |||||||||  |||| | ||||| ||| |||||||||||||    
T  33504401 tctagatctttcttaatagtttctcttatagtttttctaggtttttctctgcctctagtgatctgactaccctccatctgatctactc 33504314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 8197546 - 8197671
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||| | |||||||| ||| ||||| ||||||| |||||||| | | |||||| |||||||||||||||| | ||||||||||    ||||||    
T  8197546 aacaaccaagcattatcccactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatct 8197645  T
Q  135 ctagatatttgttaataatttctctt 160  Q
     ||||| ||| |||||| ||||||||    
T  8197646 ttagatctttcttaatagtttctctt 8197671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 8202306 - 8202431
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||| | |||||||| ||| ||||| ||||||| |||||||| | | |||||| |||||||||||||||| | ||||||||||    ||||||    
T  8202306 aacaaccaagcattatcccactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatct 8202405  T
Q  135 ctagatatttgttaataatttctctt 160  Q
     ||||| ||| |||||| ||||||||    
T  8202406 ttagatctttcttaatagtttctctt 8202431  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 3305820 - 3305944
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagat 140  Q
    ||||||| |||||||  |||||| ||  ||| || |||||||| | | |||||||||||| | |||||||||||| ||||||||  | ||||||||||||    
T  3305820 caagccttatcccacaaagtgggatccactatatggatcaaacgacgccataatgttctaccgtatatcatttctatatccaactcgttaatctctagat 3305919  T
Q  141 atttgttaataatttctcttatagt 165  Q
    |||| || ||| |||||| ||||||    
T  3305920 atttctttatagtttctcgtatagt 3305944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 17429327 - 17429249
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcattt 113  Q
    ||||| ||||||| ||| |||| ||||||||| |||||||  ||||||  ||||||||||||||||||||||| |||||    
T  17429327 aacaaccaagccttatctcactaagtggggtcggctacatgaatcaaattatgtcataatgttctatcatataccattt 17429249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 42092794 - 42092586
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||| ||| ||| ||||| ||||||| |||||||||| | || |||  ||||||||||||| | || |||||||||    ||||||    
T  42092794 aacaaccaagcctaatcctactaagtagggtcagctacatggatcaaacaacgccacaatcctctatcatatatcgtatcactatccaactaattaatct 42092695  T
Q  135 ctagatatttgttaataatttctcttatagtctttcttggtacttctgcctctgt--tgattttactacgctcaatctgatctactcgccctactacaga 232  Q
    ||| || ||| |||||| |||||| |||||| ||||| |||    ||| |||| |  ||| || ||||| ||| |||| |||||||| || ||||||| |    
T  42092694 ctacatcttttttaatagtttctcctatagtttttctaggtctacctgtctctatagtgaattgactaccctccatctaatctactctccttactacaaa 42092595  T
Q  233 atctacaag 241  Q
    |||||||||    
T  42092594 atctacaag 42092586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 18959182 - 18959118
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||  ||| |||||||||||||||||    
T  18959182 caagccttatcccactaagtggggtcagctacatggatcaaattatgccataatgttctatcata 18959118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 3866349 - 3866279
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||| ||| ||||||||| ||||||| |||||||  |||||||| ||||||||||||    
T  3866349 aacaaccaagccttatcctactaagtggggtcggctacatggatcaaatgatgtcatagtgttctatcata 3866279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 31959798 - 31959728
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||| ||| ||||||||||||||||| |||||||  ||| |||| ||||||||||||    
T  31959798 aacaaccaagccttatcctactaagtggggtctgctacatggatcaaattatgccatagtgttctatcata 31959728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 38435229 - 38435020
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| || ||||| |||||| || ||||||| |||||||  | | |||||||||| |||||| | ||  | || |||||||    ||||||    
T  38435229 aacaaccaagccttatgccactaagtgggatcggctacatggatcaaattacgccataatgttcaatcataaaccaaatttcgatccaacacattaatct 38435130  T
Q  135 ctagatatttgttaataatttctcttatagtctttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactcgccctactacaga 232  Q
    |||||| ||| |||||| |||||||| |||| ||||| ||  ||| |||||||||  |||| | ||||  ||| || |||||||||| || ||||| ||     
T  38435129 ctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctgactatcctccatatgatctactctccttactaaagc 38435030  T
Q  233 atctacaagt 242  Q
    ||||||||||    
T  38435029 atctacaagt 38435020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 45543078 - 45543148
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||||||| | |||||||| ||||||||| ||||||| |||||||  | | |||||||||||||||||    
T  45543078 aacaagcaagcattatcccactaagtggggtcggctacatagatcaaagtacgccataatgttctatcata 45543148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 41779178 - 41779243
Alignment:
Q  98 ctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttata 163  Q
    |||||||||||||| ||||||| ||||    |||||||||||| ||| ||||||||||||||||||    
T  41779178 ctatcatatatcatatctctattcaactcattaatctctagatcttttttaataatttctcttata 41779243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 11992113 - 11992181
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    ||||| ||||||| || ||||| ||||||||| ||||||| ||||||| || | |||||||||||||||    
T  11992113 aacaaccaagccttattccactaagtggggtcagctacatggatcaaataacgccataatgttctatca 11992181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 227466 - 227396
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  227466 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 227396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 8491365 - 8491268
Alignment:
Q  68 gctacattgatcaaacaatgtcataatgttctatcat--atatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttata 163  Q
    |||||||  ||||||||| ||||||||||||||||||  ||||||| | || ||||||  || ||| ||||| || ||| |||||| |||||||||||    
T  8491365 gctacatgtatcaaacaacgtcataatgttctatcatatatatcatatttcaatccaaattgttaacctctaaatctttcttaatagtttctcttata 8491268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 12474932 - 12475002
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  12474932 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 12475002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 15836203 - 15836085
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctaga-tatttgtt 147  Q
    |||||||| ||||||||| ||||||| || |||||||   ||||| || | |||| ||||||| ||||||||||||  | ||||||||| | | ||| ||    
T  15836203 atcccactaagtggggtcggctacatggaccaaacaacaacataacgtccaatcagatatcatatctctatccaactcgttaatctctacattttttctt 15836104  T
Q  148 aataatttctcttatagtc 166  Q
    | || ||||||||||||||    
T  15836103 agtagtttctcttatagtc 15836085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 19863511 - 19863441
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||| | |||||||| ||||||| | ||||||| |||||||  ||| |||||||||||||||||    
T  19863511 aacaaccaagctttatcccactaagtggggacggctacatggatcaaatcatgccataatgttctatcata 19863441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 19867843 - 19867773
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||| | |||||||| ||||||| | ||||||| |||||||  ||| |||||||||||||||||    
T  19867843 aacaaccaagctttatcccactaagtggggacggctacatggatcaaatcatgccataatgttctatcata 19867773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 19872744 - 19872674
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||| | |||||||| ||||||| | ||||||| |||||||  ||| |||||||||||||||||    
T  19872744 aacaaccaagctttatcccactaagtggggacggctacatggatcaaatcatgccataatgttctatcata 19872674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 28508955 - 28508885
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  28508955 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 28508885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 30306309 - 30306239
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  30306309 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 30306239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 35643225 - 35643155
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| |||||||  || |||  |||||||| ||||||||||||    
T  35643225 aacaaccaagccttatcccactaagtggggtcggctacatgtattaaatgatgtcatagtgttctatcata 35643155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 43832375 - 43832245
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||  ||| ||| ||||| ||||||| |||||||    ||||||||||||||| ||| ||||| ||  ||||||||    ||||||    
T  43832375 aacaaccaagccttatcaaactaagttgggtcagctacatggatcaaatgccgtcataatgttctataatacatcatatccttatccaactcattaatct 43832276  T
Q  135 ctagatatttgttaataatttctcttatagt 165  Q
    ||||||  || |||||| |||||||||||||    
T  43832275 ctagatccttcttaatagtttctcttatagt 43832245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 19234996 - 19235125
Alignment:
Q  42 aagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagata 141  Q
    |||||| |||||||| ||||| ||  ||||||| ||| |||| | | || |||||||||||| ||| ||| | |||||||||     ||||||||||||     
T  19234996 aagccttatcccactaagtggagttggctacatggattaaacgacgacagaatgttctatcaaataccatatttctatccaaatcattaatctctagatc 19235095  T
Q  142 tttgttaataatttctcttatagtctttct 171  Q
    ||| | |||| ||||||||||||| |||||    
T  19235096 tttctcaatagtttctcttatagtttttct 19235125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38328375 - 38328444
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcat 104  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| |||||||||||    
T  38328375 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgaagccatagtgttctatcat 38328444  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 12141821 - 12141749
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatata 107  Q
    ||||| ||||||| | |||||| | ||||||  ||||||| |||||||  ||| |||||||||||||||||||    
T  12141821 aacaatcaagccttaccccactaaatggggttggctacatcgatcaaatcatgccataatgttctatcatata 12141749  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 43260524 - 43260472
Alignment:
Q  190 tgattttactacgctcaatctgatctactcgccctactacagaatctacaagt 242  Q
    |||||| ||||| ||| ||||||||||||| || ||||| |||||||||||||    
T  43260524 tgatttgactaccctccatctgatctactctccttactatagaatctacaagt 43260472  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 21089674 - 21089603
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatat 106  Q
    ||||| ||||||| |||||||| ||||||| | ||||||| |||||||||||| ||||||||||||||||||    
T  21089674 aacaaccaagccttatcccactaagtgggggcagctacatggatcaaacaatgccataatgttctatcatat 21089603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 4245877 - 4245966
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||||| |||||||| ||||||||| ||||| | |||||||| ||||||||||||||||||| ||| ||| | | ||||||||    
T  4245877 aacaaccaagccttatcccactaagtggggtcggctacttggatcaaacgatgtcataatgttctatcaaataccatatttttatccaac 4245966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 6293403 - 6293533
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagat 140  Q
    ||||||| |||||||| ||||||||| |||||||||| |||||  || ||||||| ||||||||||| ||| | |||||| |||    |||| |||||||    
T  6293403 caagccttatcccactaagtggggtcggctacattgaccaaacgttgccataatgctctatcatataccatatttctatctaactcattaatatctagat 6293502  T
Q  141 atttgttaataatttctcttatagtctttct 171  Q
    ||||  ||||| ||||| || |||| |||||    
T  6293503 atttcctaatagtttctattttagtttttct 6293533  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 34510 - 34646
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| |||| || |||||||| ||||||||| ||||||| |||||||  | | ||||||||||||||||| | ||| | || |||||||    ||||||    
T  34510 aacaaccaagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaactcattaatct 34609  T
Q  135 ctagatatttgttaataatttctcttatagtctttct 171  Q
     ||||| ||| |||||  ||||||||||||| |||||    
T  34610 ttagatctttcttaatggtttctcttatagtttttct 34646  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 12890852 - 12890782
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  12890852 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcata 12890782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 34934835 - 34934905
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  34934835 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgaggccatagtgttctatcata 34934905  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 7267414 - 7267466
Alignment:
Q  59 gtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    |||||||||||||||| |||||||| |  ||||||||||  ||||||||||||    
T  7267414 gtggggtctgctacatggatcaaacgacatcataatgttgcatcatatatcat 7267466  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 7513009 - 7513065
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| |||||||||  |||||| |||||||  | |||||||||||||||||||    
T  7513009 atcccactaagtggggtcaactacatagatcaaattacgtcataatgttctatcata 7513065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 30856739 - 30856803
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| ||||||||||||||||||||||| ||  ||||||   || |||||| ||||||||||    
T  30856739 caagccttatcccacttagtggggtctgctaaatgcatcaaattttgccataattttctatcata 30856803  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 22420722 - 22420811
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||||| |||||||| |||||||||  |||||| |||||||||| | ||||||| |||||||| || ||| ||||||||||||    
T  22420722 aacaaccaagccttatcccactaagtggggtcaactacatagatcaaacaacgccataatgctctatcatttaccatatctctatccaac 22420811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 29209180 - 29209269
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| |||| || |||||| | ||||||||| |||||||||||||||||| | ||||||| ||||||||||| ||| | ||||||||||    
T  29209180 aacaaccaagtcttatcccattaagtggggtcggctacattgatcaaacaacgccataatgctctatcatataccatatttctatccaac 29209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 37042669 - 37042798
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| ||| ||||| ||||||| |||||||| |   ||||||||||||||| ||| | | | ||||||||||    ||||||    
T  37042669 aacaaccaagccttatcccactaagtcgggtcggctacatggatcaaacgacaccataatgttctatcaaataccgtatttctatccaactcaataatct 37042768  T
Q  135 ctagatatttgttaataatttctcttatag 164  Q
    |||||| ||| |||||| ||||||||||||    
T  37042769 ctagatctttcttaatagtttctcttatag 37042798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 40018211 - 40018330
Alignment:
Q  52 ccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaata 151  Q
    ||||| ||||||||| ||||||| |||||||| | | | ||||||||||||||||||||| || |||||||||    | |||||||||| ||| |||| |    
T  40018211 ccactaagtggggtcggctacatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttcttaaca 40018310  T
Q  152 atttctcttatagtctttct 171  Q
     ||| ||||||||| |||||    
T  40018311 gtttttcttatagtttttct 40018330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 31339801 - 31339695
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||||||||||| |||||||| ||||||||| | ||||| || ||||| | |||||||||||||||||| || ||| | || |||||||    ||||||    
T  31339801 aacaagcaagccttatcccactaagtggggtcggatacatggaccaaacgacgtcataatgttctatcatgtaccatatttcgatccaactcattaatct 31339702  T
Q  135 ctagata 141  Q
    |||||||    
T  31339701 ctagata 31339695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 32339802 - 32339720
Alignment:
Q  69 ctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaata 151  Q
    |||||| |||||||| | | |||||| |||||||||||||||| ||||||||||||  | |||||||||| ||||| ||||||    
T  32339802 ctacatggatcaaacgacgccataattttctatcatatatcatatctctatccaactcgttaatctctaggtatttcttaata 32339720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 47147613 - 47147514
Alignment:
Q  70 tacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtcttt 169  Q
    ||||| |||||||||||| ||||||||||||||||||||||  | ||||||||||    |||||||||||| ||| |||||| |||||  |||||| |||    
T  47147613 tacatggatcaaacaatgccataatgttctatcatatatca--tatctatccaactcattaatctctagatctttcttaatagtttcttctatagttttt 47147516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 40932929 - 40933018
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||||| |||||||  ||||||||| |||||||  |||||||   | ||||||||||||||||||||||| || |||||||||    
T  40932929 aacaatcaagccttatcccaccaagtggggtcggctacatgcatcaaacgccgccataatgttctatcatatatcatatccctatccaac 40933018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 51841203 - 51841292
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||| ||||| |||||||||| || |||||| |||| || |||||||||  | ||||||||| ||||||||||||| || |||||||||    
T  51841203 aacaaccaagcttcatcccactaagcggggtcagctatatggatcaaacaccgccataatgttgtatcatatatcatatccctatccaac 51841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 436506 - 436436
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  ||| |||| ||||||||||||    
T  436506 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgatgccatagtgttctatcata 436436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 26024855 - 26024985
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| |||| |||| ||||||| ||| |||  |   ||||||||||||||||| | ||| |||| |||||||    ||||||    
T  26024855 aacaaccaagccttatcccactaagtgaggtcggctacatggataaaattacaccataatgttctatcataaaccatgtctcgatccaactcattaatct 26024954  T
Q  135 ctagatatttgttaataatttctcttatagt 165  Q
    |||||| ||| |||||| |||||| ||||||    
T  26024955 ctagatctttcttaatagtttctcatatagt 26024985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 47372981 - 47372915
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctat 101  Q
    ||||| ||||||| |||||||| ||| ||||| ||||||| ||||| || |||||||||||||||||    
T  47372981 aacaatcaagccttatcccactaagtagggtcggctacatggatcagacgatgtcataatgttctat 47372915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 48174098 - 48174168
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||||||||||| |||||||  | | ||||||||| |||||||    
T  48174098 aacaaccaagccttatcccactaagtggggtctgctacatggatcaaatgacgccataatgttttatcata 48174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 49738555 - 49738629
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatc 109  Q
    ||||| ||||||| |||||||| | ||||||| ||||||| |||||||||  | ||||||||||| |||||||||    
T  49738555 aacaaccaagccttatcccactaaatggggtcggctacatggatcaaacaccgccataatgttctgtcatatatc 49738629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 6843867 - 6843762
Alignment:
Q  60 tggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctct 159  Q
    |||||||  |||||| |||| ||||||| ||||||||||||| ||||| ||| | |||||| |||    |||||||||||| ||| |||||| | |||||    
T  6843867 tggggtcgactacatggatccaacaatgccataatgttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagtctctct 6843768  T
Q  160 tatagt 165  Q
    ||||||    
T  6843767 tatagt 6843762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 38903756 - 38903853
Alignment:
Q  68 gctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagt 165  Q
    ||||||| |||||||| ||| ||||||||| | ||||||||||| |||||||| |||    |||||| ||| | ||| |||||| |||||||||||||    
T  38903756 gctacatggatcaaacgatgccataatgttatgtcatatatcatatctctatcaaactcattaatctttaggtctttcttaatagtttctcttatagt 38903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 1380638 - 1380578
Alignment:
Q  44 gcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcat 104  Q
    |||| |||||||| |||| |||| ||||||| |||||||||| ||||||||||| ||||||    
T  1380638 gccttatcccactaagtgaggtcggctacatggatcaaacaaagtcataatgttttatcat 1380578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 48154885 - 48154941
Alignment:
Q  68 gctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    |||||||  ||||||||||| ||||||||||| ||||||||||| | ||||||||||    
T  48154885 gctacatacatcaaacaatgccataatgttctgtcatatatcatgtttctatccaac 48154941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 54470484 - 54470344
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| ||||||||  ||||||| |||||||  | |  |||||| ||  ||||||| ||| | ||||||||||    ||||||    
T  54470484 aacaaccaagcctaatcccactaagtggggttggctacatggatcaaatgacgcaataatgctcagtcatataccatatttctatccaactcattaatct 54470385  T
Q  135 ctagatatttgttaataatttctcttatagtctttcttggt 175  Q
    |||||  ||| ||||||  |||||||||||| |||||||||    
T  54470384 ctagaactttattaatagattctcttatagtttttcttggt 54470344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 6957875 - 6957800
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatca 110  Q
    ||||| ||||||| |||||||| |||||| || ||||||| |||||||  | |||||| |||||||||||| ||||    
T  6957875 aacaaccaagccttatcccactaagtgggatcggctacatggatcaaatgacgtcatagtgttctatcatacatca 6957800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 20192309 - 20192235
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatca 110  Q
    ||||| ||||| | |||||||| ||| ||||| ||||| ||||||||| || ||||||||||||||||||| ||||    
T  20192309 aacaaccaagctttatcccactaagtagggtcggctac-ttgatcaaataacgtcataatgttctatcatacatca 20192235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 40268292 - 40268347
Alignment:
Q  51 cccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatat 106  Q
    ||||||||||| |||| |||| || || ||||||| ||||||||||||||||||||    
T  40268292 cccacttagtgaggtcggctaaatggaacaaacaacgtcataatgttctatcatat 40268347  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 49686970 - 49686883
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatcca 122  Q
    ||||| |||| || |||||||| ||||||||| ||||||| | |||||| | | |||||| ||| |||||||||||| || |||||||    
T  49686970 aacaaccaagtcttatcccactaagtggggtcggctacatggttcaaacgacgccataatattccatcatatatcatatccctatcca 49686883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 934490 - 934572
Alignment:
Q  89 cataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctcttatagtctttct 171  Q
    |||||||||||||||||||||||  | |||||||||    |||||||||||  ||| |||||| ||||||| ||||| |||||    
T  934490 cataatgttctatcatatatcataaccctatccaactcattaatctctagaactttcttaatagtttctctaatagtttttct 934572  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 8286716 - 8286646
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||| | ||||||| |||||||  | |||||| ||||||||||||    
T  8286716 aacaaccaagccttatcccactaagtgggggcggctacatggatcaaatgacgtcatagtgttctatcata 8286646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 12494940 - 12494870
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| ||| |||  | |||||| ||||||||||||    
T  12494940 aacaaccaagccttatcccactaagtggggtccgctacatggattaaatgacgtcatagtgttctatcata 12494870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 19154868 - 19154938
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||| ||| ||||||| || | |||| ||||||||||||    
T  19154868 aacaaccaagccttatcccactaagtggggtcagctgcatggatcaaataacgccatagtgttctatcata 19154938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 23906302 - 23906372
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  23906302 aacaaccaagccttatcccactaagtggggtcagctacatggatcaaatgacgccatagtgttctatcata 23906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 27338403 - 27338465
Alignment:
Q  46 ctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatat 108  Q
    ||||||||||| ||  ||||| ||||||| |||| ||| | ||||||||||||||||||||||    
T  27338403 ctcatcccactaaggagggtcggctacatggatccaactacgtcataatgttctatcatatat 27338465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 31959819 - 31959889
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  31959819 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 31959889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 52569520 - 52569590
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  52569520 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 52569590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 21214614 - 21214727
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttct 157  Q
    ||||||||| |||| ||  ||||||||| ||||||||| ||||||||| ||||| | ||| ||||||    || ||| ||||  ||| |||||| |||||    
T  21214614 agtggggtcagctatataaatcaaacaacgtcataatgctctatcatacatcatatttctctccaactcattactctatagacctttcttaatagtttct 21214713  T
Q  158 cttatagtctttct 171  Q
    |||||||| |||||    
T  21214714 cttatagtttttct 21214727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 25575101 - 25574985
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||||| |||||||| | ||||||||||||||| |||||||  |   || |||||||||||||| | ||| | || |||||||    ||||||    
T  25575101 aacaaccaagccttatcccactaaatggggtctgctacatggatcaaattacaccacaatgttctatcataaaccatatttcgatccaactcattaatct 25575002  T
Q  135 ctagatatttgttaata 151  Q
    |||||| ||| ||||||    
T  25575001 ctagatctttcttaata 25574985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 35690534 - 35690478
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||||||| ||||||||| ||||||| |||||||  | | |||||||||||||||||    
T  35690534 atcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcata 35690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 37798122 - 37798058
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| | ||| ||| |||||||||||||||  | |||||| ||||||||||||    
T  37798122 caagccttatcccactaaatggagtcggctacattgatcaaatgacgtcatattgttctatcata 37798058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 47372914 - 47372798
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgtta 148  Q
    |||||||| |||||| |  ||||||| |||||||| |   ||||||||||||| ||||| ||| | ||||||||||    |||||||| ||| ||| |||    
T  47372914 atcccactaagtgggatgggctacatggatcaaacgactccataatgttctataatataccatatttctatccaactcattaatctctggatctttatta 47372815  T
Q  149 ataatttctcttatagt 165  Q
     || |||||||||||||    
T  47372814 gtagtttctcttatagt 47372798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 7359281 - 7359471
Alignment:
Q  50 tcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaa 149  Q
    ||||||| ||||||||| ||||||| |||||||  | ||||||||||| |||| || | ||| | || ||||||| |  |||||||||||| ||| | ||    
T  7359281 tcccactaagtggggtcagctacatggatcaaattacgtcataatgtt-tatcgtaaaccatatttcgatccaacttattaatctctagatttttctaaa 7359379  T
Q  150 taatttctcttatagtctttcttgg--tacttctgcctctgttgattttactacgctcaatctgatctactcgccctactacagaatctaca 239  Q
    || |||||||||| || ||||| ||  | | |||||||||  |||| | ||||  ||| ||||||||||||| || ||||||||||||||||    
T  7359380 tagtttctcttatggtttttctaggctttcctctgcctctagtgatatgactatcctccatctgatctactctccttactacagaatctaca 7359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 27998704 - 27998582
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgtta 148  Q
    |||||||| ||||||||| | ||||| |||||||| | |||||||| |||||||||||||||| |  ||||| |||    |||||| ||||| ||| |||    
T  27998704 atcccactaagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatctaactcattaatctgtagatctttctta 27998605  T
Q  149 ataatttctcttatagtctttct 171  Q
     || ||||||||||||| |||||    
T  27998604 gtagtttctcttatagtttttct 27998582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 20457050 - 20456975
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatca 110  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | ||||||||||||||||| ||||    
T  20457050 aacaatcaagccttatcccactaagtggggtcggctacatggatcaaatgacgccataatgttctatcatacatca 20456975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 4496661 - 4496591
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  ||| |||| ||||||||||||    
T  4496661 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgatgccatagtgttctatcata 4496591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 5558417 - 5558348
Alignment:
Q  36 acaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    |||| ||||||| |||||||| ||||||||| ||||||| |||||||  ||| |||| ||||||||||||    
T  5558417 acaaccaagccttatcccactaagtggggtcggctacatggatcaaattatgccatagtgttctatcata 5558348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 1275532 - 1275473
Alignment:
Q  44 gcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    |||| |||||||| ||||||||| ||||||| |||||||  | |||||||||||||||||    
T  1275532 gccttatcccactaagtggggtcggctacatggatcaaatgacgtcataatgttctatca 1275473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 15588401 - 15588484
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    ||||||| |||||||| ||| ||||| ||||||| |||||||| | | ||||||||||| ||||||| ||| | | ||||||||    
T  15588401 caagccttatcccactaagtagggtcggctacatagatcaaacgacgccataatgttctgtcatataccatgtttttatccaac 15588484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 41808165 - 41808110
Alignment:
Q  69 ctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaac 124  Q
    |||||| |||||||| ||||||||||||||||||||| ||||| | | ||||||||    
T  41808165 ctacatggatcaaacgatgtcataatgttctatcatacatcatatttatatccaac 41808110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 11675807 - 11675737
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||| ||| ||||||||| ||||||| ||| |||| | | |||||||||||||||||    
T  11675807 aacaaccaagccttatccaactaagtggggtcggctacatggattaaactacgccataatgttctatcata 11675737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 18855884 - 18855814
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| |||| || |||||||| ||||||||| ||||||| |||||||  |||  ||||||||||||||||    
T  18855884 aacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattatgctataatgttctatcata 18855814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 29816659 - 29816589
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  29816659 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 29816589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 30213852 - 30213782
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  30213852 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 30213782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 30588710 - 30588588
Alignment:
Q  49 atcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgtta 148  Q
    |||||||| ||||| ||| ||||||| ||||| |  | ||||||||||||||| ||| | ||| | || |||||||    | |||||||||| ||| |||    
T  30588710 atcccactaagtggagtcggctacatggatcatatcacgtcataatgttctattataaaccatatttcgatccaactcattcatctctagatctttctta 30588611  T
Q  149 ataatttctcttatagtctttct 171  Q
    | ||||||||||||||| |||||    
T  30588610 acaatttctcttatagtttttct 30588588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 38132613 - 38132543
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| || |||| |||||||  | | |||||||||||||||||    
T  38132613 aacaaccaagccttatcccactaagtggggtcggccacatggatcaaattacgccataatgttctatcata 38132543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 43557838 - 43557908
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| || |||| |||||||| ||||||||| ||||||| ||||||   | |||||||||||||||||||    
T  43557838 aacaaccaggccttatcccactaagtggggtcggctacatagatcaacttaagtcataatgttctatcata 43557908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 8081968 - 8082033
Alignment:
Q  35 aacaagcaagcctcatcccacttagtgggg-tctgctacattgatcaaacaatgtcataatgttct 99  Q
    ||||| ||||||| |||||||| ||||||| || ||||||| |||||||  |||||||||||||||    
T  8081968 aacaaccaagccttatcccactaagtgggggtcggctacatggatcaaatcatgtcataatgttct 8082033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 9234163 - 9234102
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgt 96  Q
    ||||| ||||||| |||||||| ||||||||| | ||||| |||||||  ||||||||||||    
T  9234163 aacaatcaagccttatcccactaagtggggtcggttacatggatcaaattatgtcataatgt 9234102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 2915507 - 2915571
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  2915507 caagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 2915571  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 6859652 - 6859588
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| || |||| ||| |||  ||| |||||||||||||||||    
T  6859652 caagccttatcccactaagtggggtcagcaacatggataaaattatgccataatgttctatcata 6859588  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 11002426 - 11002494
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatca 103  Q
    ||||| ||||||| |||||||| ||| |||||  ||||||  ||||||||||| |||| ||||||||||    
T  11002426 aacaaccaagccttatcccactaagtagggtcgactacatgaatcaaacaatgccatagtgttctatca 11002494  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 15252755 - 15252819
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| |||||||  || |||| |  ||||||||||||||||||    
T  15252755 caagccttatcccactaagtggggtcggctacatgaattaaactacatcataatgttctatcata 15252819  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 38684757 - 38684621
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatct 134  Q
    ||||| ||||| | || ||||| |||||||||  ||||||  |||||| || | |||||||||||||||  || ||| | ||||||||||    ||||||    
T  38684757 aacaaccaagctttattccactaagtggggtcaactacatgaatcaaataacgccataatgttctatcaagtaccatatttctatccaactaattaatct 38684658  T
Q  135 ctagatatttgttaataatttctcttatagtctttct 171  Q
    |||||| ||| |||| | |||||||| |||| |||||    
T  38684657 ctagatctttcttaaaagtttctcttgtagtttttct 38684621  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 38685238 - 38685174
Alignment:
Q  41 caagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  38685238 caagccttatcccactaagtggggtcggctacatggatcaaatgacgccatattgttctatcata 38685174  T

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Target: scaffold0373 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 2331 - 2436
Alignment:
Q  60 tggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcatttctctatccaacctggtaatctctagatatttgttaataatttctct 159  Q
    |||||||  |||||| |||| ||||||| ||||||||||||| ||||| ||| | |||||| |||    |||||||||||| ||| |||||| | |||||    
T  2331 tggggtcgactacatggatccaacaatgccataatgttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagtctctct 2430  T
Q  160 tatagt 165  Q
    ||||||    
T  2431 tatagt 2436  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 608 - 538
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  608 aacaatcaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 538  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 28894 - 28964
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| |||||||  | | |||| ||||||||||||    
T  28894 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcata 28964  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 25537 - 25607
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcata 105  Q
    ||||| ||||||| |||||||| ||||||||| ||||||| ||| |||  | |||||| ||||||||||||    
T  25537 aacaaccaagccttatcccactaagtggggtccgctacatggattaaatgacgtcatagtgttctatcata 25607  T

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Target: scaffold1259 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1259
Description:

Target: scaffold1259; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 1550 - 1594
Alignment:
Q  58 agtggggtctgctacattgatcaaacaatgtcataatgttctatc 102  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||    
T  1550 agtggggtcagctacattgatcaaattacgtcataatgttctatc 1594  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 82995 - 82919
Alignment:
Q  35 aacaagcaagcctcatcccacttagtggggtctgctacattgatcaaacaatgtcataatgttctatcatatatcat 111  Q
    ||||| ||||||| || ||| | ||||||||| ||||||| |||||||  | |||||| |||||||||||| |||||    
T  82995 aacaaccaagccttattccattaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataaatcat 82919  T

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