View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_23 (Length: 243)
Name: NF8689_low_23
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_23 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 12649 - 12856
Alignment:
| Q |
16 |
atgaacaacgcactttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaatta |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
12649 |
atgaacaacccactttatagttttagtgaagtactaattaat--caattattgatgacaacattaataattgatagtattcgcgcatacataataaatta |
12746 |
T |
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| Q |
116 |
ttttcaaattgaaatttcaaccttaatttctcattttactctttataagttggtgaaatctaagaacttacggggtgaaacttggtggccatgcaacctt |
215 |
Q |
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| T |
12747 |
ttttcaaattgaaatatcaaccttaatttctcattttactctttataagttggtgaaatctaagaacttaccgggtgaaacttggtggccatgcaacctt |
12846 |
T |
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| Q |
216 |
aggattctaa |
225 |
Q |
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|||||||||| |
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| T |
12847 |
aggattctaa |
12856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 1946 - 1802
Alignment:
| Q |
16 |
atgaacaacgcactttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaatta |
115 |
Q |
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| T |
1946 |
atgaacaacccactttatagttttagtgaagtactaattaat--caattattgatgacaacattaataattgataatattcgcgcatacataataaatta |
1849 |
T |
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| Q |
116 |
ttttcaaattgaaatttcaaccttaatttctcattttactctttata |
162 |
Q |
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| T |
1848 |
ttttcaaattgaaatatcaaccttaatttctcattttactctttata |
1802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 12635482 - 12635671
Alignment:
| Q |
28 |
ctttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaattattttcaaattga |
127 |
Q |
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| T |
12635482 |
ctttatagtcatagtgaagtactaattaatatctattattgacgaaaatattaataattgatattatgcacgcatacataataaattatgatcaaattga |
12635581 |
T |
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| Q |
128 |
aatttca---accttaatttctcattttactctttataagttggtgaaatctaagaacttacggggtgaaacttggtggccatgcaacct |
214 |
Q |
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| T |
12635582 |
aatatcaattaccttaatttctcattttactctttataatatggtgaaatctttcaacttaccgggtgaaacttggtggccatgcaacct |
12635671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 37959246 - 37959033
Alignment:
| Q |
17 |
tgaacaacgcactttatagttttagtgaagtactaattaatatcgattattgatgacaacattaataattgatagtatgcgctcatacataataaattat |
116 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||| |||||||| || || ||||||||||| || |||| | ||||||||||||||||| |
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| T |
37959246 |
tgaacaattcactttatagtcatagtgaagtactaattaatatcaattattgacgaaaatattaataattggtattatgtgggcatacataataaattat |
37959147 |
T |
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| Q |
117 |
tttcaaattgaaa--tttcaa---ccttaatttctcattttactctttataagttggtgaaatctaagaacttacggggtgaaacttggtggccatgcaa |
211 |
Q |
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||||||| ||| | |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
37959146 |
gatcaaatttaaaaatatcaattaccttaatttctcattttactctttataaggtggtgaaatctttgaacttaccaggtgaaacttggtggccatgcaa |
37959047 |
T |
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| Q |
212 |
ccttaggattctaa |
225 |
Q |
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|||||||||||||| |
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| T |
37959046 |
ccttaggattctaa |
37959033 |
T |
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