View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8689_low_25 (Length: 239)

Name: NF8689_low_25
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8689_low_25
NF8689_low_25
[»] chr3 (1 HSPs)
chr3 (1-214)||(41080536-41080748)
[»] scaffold1268 (1 HSPs)
scaffold1268 (174-214)||(989-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (174-214)||(989-1029)
[»] chr8 (2 HSPs)
chr8 (174-214)||(37038479-37038519)
chr8 (174-214)||(4854923-4854963)
[»] chr4 (2 HSPs)
chr4 (174-214)||(50526231-50526271)
chr4 (174-214)||(50052488-50052528)
[»] chr1 (2 HSPs)
chr1 (174-214)||(51898743-51898783)
chr1 (174-211)||(37649198-37649235)
[»] chr7 (1 HSPs)
chr7 (174-214)||(3434562-3434602)
[»] chr5 (1 HSPs)
chr5 (174-214)||(2740274-2740314)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 41080536 - 41080748
Alignment:
Q  1 atagcttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcagattctttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41080536 atagcttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgcagattctttac 41080635  T
Q  101 gtttgaagaagttgaagggaaatttcttattaggtattattatgatatgccaactttgtgtgactttaacaacgagtaatgatacatggacatctttagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||| |||||| ||| |    
T  41080636 gtttgaagaagttgaagggaaatttcttattaggtattattatgatataccaactctctatgactttaacaacgagtaatgatacatagacatcctta-g 41080734  T
Q  201 tggcaaaacaccct 214  Q
    | ||||||||||||    
T  41080735 tagcaaaacaccct 41080748  T

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Target: scaffold1268 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 1029 - 989
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct 989  T

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Target: scaffold1267 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 1029 - 989
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct 989  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 37038479 - 37038519
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccct 37038519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 4854963 - 4854923
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccct 4854923  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 50526271 - 50526231
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacaccct 50526231  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 50052528 - 50052488
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccct 50052488  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 51898783 - 51898743
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccct 51898743  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 37649198 - 37649235
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacac 211  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  37649198 gagtaatgatacatagacatctttaggtggcaatacac 37649235  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3434562 - 3434602
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccct 3434602  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 2740274 - 2740314
Alignment:
Q  174 gagtaatgatacatggacatctttaggtggcaaaacaccct 214  Q
    |||||||||||||| |||||| ||||||||||| |||||||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccct 2740314  T

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