View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_33 (Length: 228)
Name: NF8689_low_33
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_33 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 11208726 - 11208953
Alignment:
| Q |
1 |
ttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaagcaagttgttttccttagttgtttgcc |
100 |
Q |
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| T |
11208726 |
ttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctagcaagttgttgtccttagttgtttgcc |
11208825 |
T |
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| Q |
101 |
tctcaccctcataaacagaaattgataaactattttggttgggttcactggtggtgtatacatgttccatattggtcggaatcgtggtattcctaggaat |
200 |
Q |
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| T |
11208826 |
tctcaccctcataaacggaaattgataaactattttggttgggttcactggtggtgtatacatcttccatattggtaggaatcgtggtattcctaggaat |
11208925 |
T |
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| Q |
201 |
tattacgctcatgaggccccctttgata |
228 |
Q |
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| T |
11208926 |
tattacgctcatgaggccccctttgata |
11208953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 11169904 - 11170127
Alignment:
| Q |
1 |
ttaatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaagcaagttgttttccttagttgtttgcc |
100 |
Q |
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| T |
11169904 |
ttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcc |
11170003 |
T |
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| Q |
101 |
tctcaccctcataaacagaaattgata-aactattttggttgggttcactggtggtgtatacatgttccatattggtcggaatcgtggtattcctaggaa |
199 |
Q |
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| T |
11170004 |
tctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctattggtaggaatcgtggtattcctaggaa |
11170102 |
T |
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| Q |
200 |
ttattacgctcatgaggcccccttt |
224 |
Q |
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| T |
11170103 |
ttattacgcccatgaggtccccttt |
11170127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 11275290 - 11275402
Alignment:
| Q |
3 |
aatttggaagttgaccacgaatttttgatcaccttttggacgtggaggaatttcaaactcaaaagatccaagcaagttgttttccttagttgtttgcctc |
102 |
Q |
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| T |
11275290 |
aatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttgtccttagttgttttcctc |
11275389 |
T |
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| Q |
103 |
tcaccctcataaa |
115 |
Q |
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| T |
11275390 |
tcaccctcataaa |
11275402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 11155693 - 11155741
Alignment:
| Q |
69 |
tccaagcaagttgttttccttagttgtttgcctctcaccctcataaaca |
117 |
Q |
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| T |
11155693 |
tccaagcaagttgttttccctagttattttcctctcaccttcataaaca |
11155741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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