View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_35 (Length: 220)
Name: NF8689_low_35
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_35 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36210319 - 36210560
Alignment:
| Q |
1 |
caagcaaggtcgtgagagggagttttagaagctatgaattggaagagttgaggtggataacttggcctcgaatctgcatattcctttccctgtttcgcaa |
100 |
Q |
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| T |
36210319 |
caagcaaggtcgtgagagggagttttagaagctatgaattggaagagttgtggtggataacttggccttgaatctgcatattcctttccctgtttcgcaa |
36210418 |
T |
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| Q |
101 |
aatgctctgccatttctattctctccttaattaagct----------------------aatattgagatcattcttgcacaatttattcatttgtgata |
178 |
Q |
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| T |
36210419 |
aatgctctgccatttctattctctccttaattaagctaaagttaataatctaatataataacattgagatcattcttgcacaatttattcatttgtgata |
36210518 |
T |
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| Q |
179 |
tgataggagaagaaccttcgctggcatacacctaaaaagaca |
220 |
Q |
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| T |
36210519 |
tgataggagaagaaccttcgctggcatacacctaaaaagaca |
36210560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 35401810 - 35401696
Alignment:
| Q |
5 |
caaggtcgtgagagggagttttagaagctatgaattggaagagttgaggtggataacttggcctcgaatctgcatattcctttccctgtttcgcaaaatg |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||| |||||||||||||| ||| ||||| | |
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| T |
35401810 |
caaggttgtgagagggagttttagaagctatgaattgaaagagttgtggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaag |
35401711 |
T |
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| Q |
105 |
ctctgccatttctat |
119 |
Q |
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| T |
35401710 |
ctctgccatctctat |
35401696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 35399082 - 35398974
Alignment:
| Q |
5 |
caaggtcgtgagagggagttttagaagctatgaattggaagagttgaggtggataacttggcctcgaatctgcatattcctttccctgtttcgcaaaatg |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||| |||||||||||||| ||| ||||| | |
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| T |
35399082 |
caaggttgtgagagggagttttagaagctatgaattgaaagagttgtggtggataacttggccttgcatctgcgtattcctttccctgattcacaaaaag |
35398983 |
T |
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| Q |
105 |
ctctgccat |
113 |
Q |
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| T |
35398982 |
ctctgccat |
35398974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 36206558 - 36206683
Alignment:
| Q |
7 |
aggtcgtgagagggagttttagaagctatgaattggaagagttgaggtggataacttggcctcgaatctgcatattcctttccctgtttcgcaaaatgct |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || || ||||||| || |||| ||| || || | | |
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| T |
36206558 |
aggttgtgagagggagttttagaagctatgaattggaagagttgtggtggataacttggccttgcatttgaatattcccttgcctgattcacataaagtt |
36206657 |
T |
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| Q |
107 |
ctgccatttctattctctccttaatt |
132 |
Q |
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||||||| |||||||||| ||||||| |
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| T |
36206658 |
ctgccatctctattctcttcttaatt |
36206683 |
T |
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