View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_37 (Length: 215)
Name: NF8689_low_37
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 28386244 - 28386065
Alignment:
| Q |
24 |
cctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgatt |
123 |
Q |
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| T |
28386244 |
cctatcaccacttggaagatccataatggcgcaatgctcctcaatgaagcggttggggatttcgttgagaagaatccaccggattgtattattgctgact |
28386145 |
T |
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| Q |
124 |
ccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctctgct |
203 |
Q |
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| T |
28386144 |
ccgcattctcatgggctaatgacttggcccacaagcttcaaatcccgaatctaacgtttaatggatcgtctctctttgct |
28386065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 12541582 - 12541465
Alignment:
| Q |
34 |
cttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgcattctc |
133 |
Q |
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| T |
12541582 |
cttggaaaattcacaatggtgcaatgctcctccatggacccattgatgattttgttgtgaataatccacctgattgtatcattgccgactcttcttactc |
12541483 |
T |
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| Q |
134 |
atgggctaatgacttggc |
151 |
Q |
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| T |
12541482 |
atggggtaatgacttggc |
12541465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 13449265 - 13449125
Alignment:
| Q |
29 |
caccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgca |
128 |
Q |
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| T |
13449265 |
caccacttggaagatccatactggcgcgatgctccttaaagaacctattggggatttcattgagaatgatccaccggattgtatcatctccgactccacg |
13449166 |
T |
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| Q |
129 |
ttctcatgggctaatgacttggcccacaagcttcaaatccc |
169 |
Q |
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| T |
13449165 |
tacccatgggttaatgacttggccgataagtttcagatccc |
13449125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 13441106 - 13440962
Alignment:
| Q |
25 |
ctatcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattc |
124 |
Q |
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|||| ||| ||||||||||||| |||||||||||||||| ||| | | ||| ||||||| | ||||| ||||||| |||||||| || | || || |
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| T |
13441106 |
ctatgacctcttggaagatccaccgtggcgcaatgctcctccatggatccattgaggatttcatggagaaagatccaccagattgtatcatctccgactc |
13441007 |
T |
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| Q |
125 |
cgcattctcatgggctaatgacttggcccacaagcttcaaatccc |
169 |
Q |
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| T |
13441006 |
cgcatacccatgggctaatgacttggcgcataagcttcagatccc |
13440962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 13462281 - 13462229
Alignment:
| Q |
34 |
cttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttc |
86 |
Q |
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| T |
13462281 |
cttggaagatccatcatggcgcaatgctcctccatggacccattgaggatttc |
13462229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 3416812 - 3416953
Alignment:
| Q |
28 |
tcaccacttggaagatccataatggcgcaatgctcctcaatgaaccggttggggatttcgttgagaagaatccaccggattgtattattgctgattccgc |
127 |
Q |
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||||||||||||||||| | |||||||||||||||||| || ||| ||| ||||||| || | || ||||||| |||||||| || | || || || |
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| T |
3416812 |
tcaccacttggaagatcaacaatggcgcaatgctcctccatcgacccattgaggatttcattaaaaacgatccaccagattgtatcatctccgactctgc |
3416911 |
T |
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| Q |
128 |
attctcatgggctaatgacttggcccacaagcttcaaatccc |
169 |
Q |
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|| | |||||| ||||||||||||||| |||||||||||||| |
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| T |
3416912 |
atacccatgggttaatgacttggcccagaagcttcaaatccc |
3416953 |
T |
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