View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_6 (Length: 369)
Name: NF8689_low_6
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 42560639 - 42560836
Alignment:
| Q |
16 |
cttacacactttactttgaacatcattaatcaggcatatactataaaaataacaaaattaaattaagaacttagaaatataacttaaatactatttgaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560639 |
cttacacactttactttgaacatcattaatcaggcatatactataaaaataacaaaattaaattaagaacttagaaatataacttaaatactatttgaac |
42560738 |
T |
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| Q |
116 |
atcattaatcatacatgcattttcctgctccattatatatataataatttaattactttgattggtttctaggattaggaaagaaaaaagatcgagct |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560739 |
atcattaatcatacatgcattttcctactccattatatatataataatttaattactttgattggtttctaggattaggaaagaaaaaagatcgagct |
42560836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 42560871 - 42560973
Alignment:
| Q |
248 |
gatggagagatcaatagtagctccacaaactttctcccgaagtgtagtattcaggcaagtactcagacggtggtggattcattctgggaggagaaagcaa |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560871 |
gatggagagatcaatagtagctccacaaactttctcccgaagtgtagtattcaggcaagtactcagacggtggtggattcattctgggaggagaaagcaa |
42560970 |
T |
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| Q |
348 |
cat |
350 |
Q |
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||| |
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| T |
42560971 |
cat |
42560973 |
T |
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