View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8689_low_7 (Length: 364)
Name: NF8689_low_7
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 8652048 - 8652390
Alignment:
| Q |
4 |
gagtttggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttcaagataccaatctttgttaggaattctgggatgaaaatt |
103 |
Q |
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| T |
8652048 |
gagtgtggtggtgtctgtgaaatactcttgctctccagcagtgtaccatgaaggtgtgttcaagataccaatctttgttaggaattctgggatgaaaatt |
8652147 |
T |
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| Q |
104 |
cctgctgctcccaacattgcccatctgcagtgcacaagctcggcttgaacattccatttcagactctctggatcagaggctgttgaatcacaaccaaaac |
203 |
Q |
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| T |
8652148 |
cctgctgctcccaacattgcccatctgcagtgcacaagctcggcttgaacattccatttcagactctctggatcagaggctgttgaatcacaaccaaaac |
8652247 |
T |
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| Q |
204 |
tttgattaatattatggtcatttgtattcccaacaatgaaaataagaccaccgttgtctctaaatacatgaccatgttgacgaaatcaagagaaattaag |
303 |
Q |
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||||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8652248 |
tttgattaatattatggtcgtttgtattcccagcaaggataataagaccaccgttgtctctaaatacatgaccatgttgacgaaatcaagaaaaattaag |
8652347 |
T |
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| Q |
304 |
aaagttcgtagtaatattaaacttattaatagttgtttgttat |
346 |
Q |
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| T |
8652348 |
aaagttcgtagtaatattaaacttattaatagttgtttgttat |
8652390 |
T |
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