View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8689_low_8 (Length: 358)
Name: NF8689_low_8
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 9884630 - 9884301
Alignment:
| Q |
18 |
cacttatagattcctcaaaatccagcacacattcatctttagttgagtattgataccactattcagggtttagtattatcactcatatctagggttgagt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884630 |
cacttatagattcctcaagatccagcacgcatgcatctttagttgagtattgataccactatccagggtttagtattatcactcatatctagggttgagt |
9884531 |
T |
|
| Q |
118 |
attattcacaatctctttaggtcattccactttcaaattccata--gtagaataccaccacatatgttgaaagttgcgagtgtttaacatctctctagaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884530 |
attattcacaatctctttaggtcattccactttcaacttccatatagtagaataccaccacatatgttgaaagttgcgagtgtttaacatctctctagaa |
9884431 |
T |
|
| Q |
216 |
tcatttaatcaaattaaagggtgtttacactagtgagccaattacaacactttgagtttgtatatgcatgcacaaatcttagatcaatgcatatgcatga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9884430 |
tcatttaatcaaattaaagggtgtttacactagtgagccaattacaacactttgagtttgtatatgtatgcacaaatcttagatcaatgcatatgcatga |
9884331 |
T |
|
| Q |
316 |
gaacaacttgattgatttacaacatcatct |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9884330 |
gaacaacttgattgatttacaacatcatct |
9884301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 9884192 - 9884160
Alignment:
| Q |
313 |
tgagaacaacttgattgatttacaacatcatct |
345 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
9884192 |
tgagaacaacatgattgatttacaacatcatct |
9884160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University