View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8689_low_9 (Length: 336)
Name: NF8689_low_9
Description: NF8689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8689_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 36166861 - 36166542
Alignment:
| Q |
1 |
tacaattttctgaataattggaccctaaaattgtttctgtttttggttttattatggcatcatttggtcacatgatattatacaaatggacgccaaaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36166861 |
tacaattttctgaataattggaccctaaaattgtttctgtttttggttttattatggcatcatttggtcacatgatattatacaaatggacaccaaaacg |
36166762 |
T |
|
| Q |
101 |
cgtacaggtcagcaacatatataatattgatatcactcaatttcatcacatcacttatactatactaatcatgtataataatttattaattcattaacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36166761 |
cgtacaggtcagcaacatatataatattgatatcactcaatttcatcacatcacttatactatactaatcatgtataataatttattaattcattaacag |
36166662 |
T |
|
| Q |
201 |
cttcacttactttaaataatctcagcaattatgctgtgtgatgtggtataatcattctgcatactattatatacacatgcatgatgatgcatcattccac |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36166661 |
cttcacttactttaaataatctctgcaattatgctgtgtgatgtggtataatcattctgcatactattatatacacatgcatgatgatgcatcattccac |
36166562 |
T |
|
| Q |
301 |
cgtacatatcatattcatcg |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36166561 |
cgtacatatcatattcatcg |
36166542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University