View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8690_1 (Length: 576)

Name: NF8690_1
Description: NF8690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8690_1
NF8690_1
[»] chr7 (27 HSPs)
chr7 (33-383)||(6239745-6240094)
chr7 (52-137)||(18397984-18398068)
chr7 (384-446)||(9865579-9865642)
chr7 (384-446)||(45288075-45288138)
chr7 (384-446)||(45291411-45291474)
chr7 (383-446)||(20081577-20081641)
chr7 (384-446)||(17729973-17730036)
chr7 (378-446)||(10344610-10344679)
chr7 (384-446)||(4694723-4694786)
chr7 (384-446)||(8276012-8276075)
chr7 (195-277)||(41620266-41620348)
chr7 (384-440)||(4596867-4596924)
chr7 (384-421)||(37167033-37167070)
chr7 (383-446)||(9080375-9080439)
chr7 (63-115)||(15999378-15999430)
chr7 (62-115)||(14585507-14585560)
chr7 (62-174)||(32402510-32402619)
chr7 (220-301)||(32402398-32402481)
chr7 (383-421)||(11951279-11951317)
chr7 (384-446)||(4542074-4542137)
chr7 (384-421)||(4860992-4861029)
chr7 (384-446)||(10431386-10431449)
chr7 (384-421)||(11826393-11826430)
chr7 (384-446)||(26556510-26556573)
chr7 (248-302)||(41615651-41615707)
chr7 (384-416)||(13450733-13450765)
chr7 (52-132)||(41620414-41620494)
[»] chr4 (42 HSPs)
chr4 (33-384)||(27258249-27258598)
chr4 (33-351)||(40087764-40088083)
chr4 (33-306)||(21201109-21201380)
chr4 (85-337)||(44343741-44343988)
chr4 (54-350)||(35945533-35945824)
chr4 (195-364)||(2915829-2915998)
chr4 (383-446)||(12782105-12782169)
chr4 (384-440)||(27013229-27013287)
chr4 (383-446)||(44809841-44809905)
chr4 (384-439)||(52007375-52007431)
chr4 (384-446)||(29323979-29324042)
chr4 (392-446)||(40794200-40794255)
chr4 (384-446)||(15430702-15430766)
chr4 (384-446)||(15437316-15437380)
chr4 (384-440)||(24045000-24045057)
chr4 (384-446)||(44164001-44164065)
chr4 (384-446)||(19819950-19820014)
chr4 (384-446)||(3718336-3718399)
chr4 (392-446)||(21418987-21419042)
chr4 (384-440)||(27677908-27677966)
chr4 (383-446)||(15431163-15431227)
chr4 (383-446)||(15437777-15437841)
chr4 (384-440)||(19826701-19826759)
chr4 (389-446)||(34320781-34320839)
chr4 (383-421)||(38284378-38284416)
chr4 (384-440)||(53010401-53010458)
chr4 (384-421)||(34018662-34018699)
chr4 (384-421)||(48416411-48416448)
chr4 (384-446)||(35509201-35509262)
chr4 (384-446)||(14571026-14571089)
chr4 (383-446)||(27691961-27692026)
chr4 (384-446)||(3798733-3798796)
chr4 (384-446)||(5669628-5669691)
chr4 (517-554)||(5721808-5721845)
chr4 (384-446)||(18910604-18910667)
chr4 (384-446)||(33410899-33410962)
chr4 (384-421)||(40617787-40617824)
chr4 (384-421)||(48636709-48636746)
chr4 (384-421)||(52531796-52531833)
chr4 (35-115)||(2915675-2915754)
chr4 (384-439)||(5680469-5680525)
chr4 (381-446)||(19865580-19865646)
[»] chr6 (22 HSPs)
chr6 (40-351)||(25436798-25437103)
chr6 (40-344)||(25461785-25462088)
chr6 (384-446)||(10289186-10289249)
chr6 (384-446)||(28666113-28666176)
chr6 (33-135)||(29178766-29178868)
chr6 (195-302)||(29178931-29179040)
chr6 (384-422)||(12981150-12981188)
chr6 (384-421)||(2378435-2378472)
chr6 (384-421)||(15543215-15543252)
chr6 (399-446)||(20181288-20181336)
chr6 (399-446)||(22154655-22154703)
chr6 (384-446)||(9953036-9953099)
chr6 (383-421)||(22463514-22463552)
chr6 (384-421)||(5739153-5739190)
chr6 (384-421)||(9314767-9314804)
chr6 (384-421)||(11188798-11188835)
chr6 (384-421)||(21633551-21633588)
chr6 (517-554)||(23379650-23379687)
chr6 (517-554)||(23388989-23389026)
chr6 (384-421)||(28116940-28116977)
chr6 (384-421)||(28229800-28229837)
chr6 (384-421)||(30654648-30654685)
[»] chr8 (20 HSPs)
chr8 (40-337)||(8120553-8120848)
chr8 (383-446)||(18826771-18826835)
chr8 (383-446)||(12582217-12582281)
chr8 (384-446)||(19792926-19792990)
chr8 (383-421)||(16952997-16953035)
chr8 (408-446)||(25228039-25228077)
chr8 (195-273)||(27423251-27423329)
chr8 (384-421)||(10663011-10663048)
chr8 (384-421)||(31984107-31984144)
chr8 (507-554)||(5540832-5540879)
chr8 (384-446)||(5540932-5540995)
chr8 (384-446)||(5981157-5981220)
chr8 (384-446)||(45156855-45156918)
chr8 (379-421)||(13096045-13096087)
chr8 (384-421)||(17895490-17895527)
chr8 (384-421)||(20261647-20261684)
chr8 (384-421)||(21048277-21048314)
chr8 (517-554)||(25595521-25595558)
chr8 (382-446)||(30640503-30640570)
chr8 (383-446)||(14420863-14420927)
[»] chr1 (24 HSPs)
chr1 (33-367)||(39311843-39312171)
chr1 (56-307)||(16799058-16799304)
chr1 (384-438)||(21019313-21019367)
chr1 (384-446)||(2404722-2404785)
chr1 (384-438)||(41059178-41059234)
chr1 (74-302)||(25291739-25291964)
chr1 (384-446)||(45961644-45961707)
chr1 (383-434)||(21108342-21108394)
chr1 (380-446)||(42021717-42021784)
chr1 (385-446)||(27537150-27537212)
chr1 (384-421)||(45940621-45940658)
chr1 (383-422)||(22460405-22460444)
chr1 (62-132)||(1635953-1636023)
chr1 (383-421)||(28110282-28110320)
chr1 (384-446)||(2793299-2793362)
chr1 (384-421)||(37184746-37184783)
chr1 (384-421)||(47708780-47708817)
chr1 (384-446)||(29644245-29644308)
chr1 (383-422)||(49147112-49147151)
chr1 (384-422)||(22454281-22454319)
chr1 (517-554)||(2793425-2793462)
chr1 (384-421)||(3088698-3088735)
chr1 (384-421)||(20398067-20398104)
chr1 (384-421)||(23022806-23022843)
[»] chr2 (35 HSPs)
chr2 (34-343)||(15827985-15828290)
chr2 (33-347)||(42294841-42295150)
chr2 (33-275)||(26312726-26312971)
chr2 (53-174)||(38716514-38716635)
chr2 (383-446)||(5665829-5665893)
chr2 (384-446)||(16788389-16788451)
chr2 (383-446)||(43722903-43722967)
chr2 (384-446)||(10599951-10600014)
chr2 (384-446)||(38014636-38014699)
chr2 (384-440)||(13972756-13972813)
chr2 (386-440)||(13136764-13136819)
chr2 (384-446)||(31430575-31430638)
chr2 (383-421)||(31586786-31586824)
chr2 (384-440)||(3874482-3874539)
chr2 (384-421)||(9189535-9189572)
chr2 (384-446)||(25873203-25873266)
chr2 (384-421)||(37280559-37280596)
chr2 (384-421)||(43208772-43208809)
chr2 (33-117)||(15826415-15826499)
chr2 (383-440)||(25869834-25869892)
chr2 (195-292)||(38716085-38716184)
chr2 (384-446)||(6825974-6826037)
chr2 (383-421)||(40780657-40780695)
chr2 (384-421)||(8887842-8887879)
chr2 (384-421)||(9186306-9186343)
chr2 (384-421)||(25957326-25957363)
chr2 (384-446)||(5104953-5105014)
chr2 (195-307)||(34121709-34121820)
chr2 (383-421)||(25960552-25960590)
chr2 (383-446)||(36809372-36809436)
chr2 (383-421)||(42369583-42369621)
chr2 (384-421)||(24237554-24237591)
chr2 (384-440)||(25139983-25140040)
chr2 (384-421)||(25955819-25955856)
chr2 (384-421)||(30148608-30148645)
[»] chr5 (29 HSPs)
chr5 (226-346)||(624379-624500)
chr5 (384-446)||(7270241-7270304)
chr5 (384-438)||(21827985-21828041)
chr5 (384-446)||(14016973-14017036)
chr5 (384-446)||(28788338-28788401)
chr5 (35-137)||(623615-623717)
chr5 (384-446)||(21336678-21336742)
chr5 (384-439)||(17747617-17747673)
chr5 (383-432)||(25329455-25329505)
chr5 (384-446)||(40916823-40916889)
chr5 (384-421)||(41307408-41307445)
chr5 (384-423)||(25329509-25329548)
chr5 (384-446)||(30065562-30065625)
chr5 (386-446)||(39191333-39191394)
chr5 (517-554)||(42061612-42061649)
chr5 (389-440)||(4100380-4100431)
chr5 (383-446)||(32837082-32837146)
chr5 (383-446)||(37214765-37214829)
chr5 (40-115)||(9779672-9779747)
chr5 (384-446)||(22937992-22938055)
chr5 (383-421)||(34830976-34831014)
chr5 (383-421)||(41877646-41877684)
chr5 (406-446)||(2836702-2836743)
chr5 (384-421)||(12087152-12087189)
chr5 (384-446)||(14376771-14376834)
chr5 (384-421)||(26753583-26753620)
chr5 (384-446)||(28442118-28442181)
chr5 (384-440)||(43490793-43490850)
chr5 (384-439)||(18031710-18031766)
[»] chr3 (37 HSPs)
chr3 (384-450)||(54460367-54460434)
chr3 (385-446)||(9380012-9380074)
chr3 (383-446)||(53814970-53815034)
chr3 (384-446)||(16243166-16243229)
chr3 (384-446)||(34984695-34984758)
chr3 (384-446)||(29344709-29344773)
chr3 (383-446)||(10880775-10880839)
chr3 (384-446)||(41976321-41976384)
chr3 (383-446)||(20729413-20729478)
chr3 (49-110)||(896984-897045)
chr3 (384-446)||(3839790-3839856)
chr3 (384-446)||(10884018-10884081)
chr3 (384-446)||(23299490-23299553)
chr3 (383-440)||(538014-538072)
chr3 (387-446)||(43808881-43808941)
chr3 (383-446)||(6921889-6921953)
chr3 (384-440)||(16185599-16185656)
chr3 (384-421)||(43926124-43926161)
chr3 (384-420)||(31857055-31857091)
chr3 (384-446)||(19302301-19302364)
chr3 (392-446)||(54736787-54736842)
chr3 (383-421)||(24124785-24124823)
chr3 (383-421)||(50462418-50462456)
chr3 (384-421)||(2280742-2280779)
chr3 (384-421)||(2778015-2778052)
chr3 (384-421)||(2872853-2872890)
chr3 (384-421)||(6445634-6445671)
chr3 (384-421)||(7485860-7485897)
chr3 (384-421)||(8462521-8462558)
chr3 (384-421)||(9157508-9157545)
chr3 (517-554)||(18645578-18645615)
chr3 (384-421)||(24128063-24128100)
chr3 (384-421)||(28264992-28265029)
chr3 (406-446)||(35411699-35411740)
chr3 (384-421)||(42355299-42355336)
chr3 (384-421)||(45895658-45895695)
chr3 (384-421)||(49743788-49743825)
[»] scaffold0757 (1 HSPs)
scaffold0757 (383-446)||(4562-4626)
[»] scaffold0381 (1 HSPs)
scaffold0381 (384-440)||(6496-6554)
[»] scaffold0520 (1 HSPs)
scaffold0520 (384-440)||(4823-4880)
[»] scaffold0270 (3 HSPs)
scaffold0270 (383-446)||(4357-4421)
scaffold0270 (383-446)||(11487-11551)
scaffold0270 (384-446)||(997-1060)
[»] scaffold0015 (2 HSPs)
scaffold0015 (383-446)||(197241-197305)
scaffold0015 (516-554)||(197356-197394)
[»] scaffold1026 (1 HSPs)
scaffold1026 (384-421)||(2564-2601)
[»] scaffold0567 (1 HSPs)
scaffold0567 (384-421)||(7018-7055)
[»] scaffold0014 (1 HSPs)
scaffold0014 (384-421)||(226465-226502)
[»] scaffold0005 (1 HSPs)
scaffold0005 (384-446)||(246287-246350)
[»] scaffold0045 (1 HSPs)
scaffold0045 (379-413)||(88960-88994)
[»] scaffold0427 (1 HSPs)
scaffold0427 (384-421)||(4675-4712)
[»] scaffold0250 (1 HSPs)
scaffold0250 (384-421)||(18599-18636)
[»] scaffold0080 (2 HSPs)
scaffold0080 (517-554)||(26371-26408)
scaffold0080 (407-446)||(26277-26317)
[»] scaffold0038 (1 HSPs)
scaffold0038 (384-421)||(30298-30335)
[»] scaffold1993 (1 HSPs)
scaffold1993 (384-439)||(1045-1101)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 33 - 383
Target Start/End: Complemental strand, 6240094 - 6239745
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6240094 agtagaatatcgatcccatgaggattgtcgtggataagttctaagtatttttaaatgctaagtttaattatttaagatccaaaaaggaaaataacaaaga 6239995  T
Q  133 caaggctgtaagattctaaatagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattga 232  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||        |||||||  |||||||||||||||||||||||||||||||||    
T  6239994 caaggctttaagaatctaaatagtaaaatgcagaagtaaataaagcatgtaaaaaaa-tgaattattgattcaagtgaaaaattgtggttaaggaattga 6239896  T
Q  233 cttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttata 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6239895 cttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtagaacttcccacggagaaatgtaaagagttata 6239796  T
Q  333 gcttcgcatagcttcctgggaacctaatggccactaggtgtattgtgcact 383  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  6239795 gcttcgcatagcttcctgtgaacctggtggccactaggtgtattgtgcact 6239745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 18397984 - 18398068
Alignment:
Q  52 gaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaagg 137  Q
    ||||||||| |||||||||||||||||||||| ||||| || |||||| |||||||||||||||||| ||||||||||| ||||||    
T  18397984 gaggattgttgtggataagttctaagtatttccaaatgataggtttaa-tatttaagatccaaaaagacaaataacaaatacaagg 18398068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 9865642 - 9865579
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  9865642 tgatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 9865579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 45288138 - 45288075
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaa 45288075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 45291474 - 45291411
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  45291474 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaa 45291411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 20081641 - 20081577
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagt-cttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  20081641 ttgatgacagtcagtcattcactatttttagagtgtttttatgatatttttgagttcacaagcaa 20081577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 17729973 - 17730036
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagt-cttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||    
T  17729973 tgatgacagtcagtctttcactatttttagagtccttttatgatatttttgagttcacaagcaa 17730036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 446
Target Start/End: Original strand, 10344610 - 10344679
Alignment:
Q  378 tgcacttgatgacagtcagtcattcgctatttttagagtctt-ttatgatatttttgagttcacgagcaa 446  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||    
T  10344610 tgcaattgatgactgtcagtaattcgctatttttagagtcttcttatgaaatttttgagttcacaagcaa 10344679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 4694723 - 4694786
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtcttt-tatgatatttttgagttcacgagcaa 446  Q
    |||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||| |||||    
T  4694723 tgatgaaagtcagtcatttgttatttttagagtctttctatgatatttttgagttcacaagcaa 4694786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 8276012 - 8276075
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||| |||||    
T  8276012 tgatgacagtctgtcattccatatttttagagtctttttatgatatttttgagttcacaagcaa 8276075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 41620348 - 41620266
Alignment:
Q  195 ttagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactct 277  Q
    |||||||||||||| ||||  | | ||||| ||||| |||||||||| |||  |||||||||||||||||||| |||||||||    
T  41620348 ttagagattcaagtaaaaacgtttagttaacgaattaacttggtaaaaataaaggtttgcatgatttagaaaattacaactct 41620266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 4596924 - 4596867
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||||    
T  4596924 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagctcac 4596867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 37167070 - 37167033
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37167070 tgatgacagtcagtcattcgctatttttagagtctttt 37167033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 9080375 - 9080439
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||  |||||||||||||| |||||    
T  9080375 ttgatgacagttagtcattcgttatttttagagtctttttatgtaatttttgagttcacaagcaa 9080439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 15999378 - 15999430
Alignment:
Q  63 tggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaa 115  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||||||||||    
T  15999378 tggataagttataagtattttcaaatgctaagtttagttatttaagatccaaa 15999430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 14585507 - 14585560
Alignment:
Q  62 gtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaa 115  Q
    ||||||||||| |||||||||  ||||||||||| || ||||||||||||||||    
T  14585507 gtggataagttataagtattttcaaatgctaagtatagttatttaagatccaaa 14585560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 32402619 - 32402510
Alignment:
Q  62 gtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggctgtaagattctaaatagtaaaat 161  Q
    |||||||||||||||||||||  |||   |||||||| ||||| || |||||||  | ||||||||||||| |||| | |||||| ||||  ||||||||    
T  32402619 gtggataagttctaagtattttcaaact-taagtttagttattcaaaatccaaagtgacaaataacaaagataaggttttaagatactaa--agtaaaat 32402523  T
Q  162 gcagaagtaaata 174  Q
    ||| |||||||||    
T  32402522 gcataagtaaata 32402510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 32402481 - 32402398
Alignment:
Q  220 gttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctga--tatggaagctatagcttcgtac 301  Q
    ||||||||||| ||| ||||||||| | | ||| || |||||||||| |||||||| |||  |||| |||||||||||||||||    
T  32402481 gttaaggaattaactcggtaaagatggagcttttcaagatttagaaagctacaactttgagttatgaaagctatagcttcgtac 32402398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 11951317 - 11951279
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  11951317 ttgatgacagtccgtcattcgttatttttagagtctttt 11951279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 4542074 - 4542137
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  4542074 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 4542137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 4860992 - 4861029
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  4860992 tgatgacagtccgtcattcgctatttctagagtctttt 4861029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 10431386 - 10431449
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  10431386 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 10431449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 11826430 - 11826393
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  11826430 tgatgacagtcagtcatgcactatttttagagtctttt 11826393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 26556510 - 26556573
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  26556510 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 26556573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 41615707 - 41615651
Alignment:
Q  248 ggtttgcatgatttagaaaactacaactctga--tatggaagctatagcttcgtaca 302  Q
    |||||||| ||||||||||  |||||||||||  |||||||| ||||||||||||||    
T  41615707 ggtttgcaagatttagaaagttacaactctgaattatggaagttatagcttcgtaca 41615651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 13450765 - 13450733
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagt 416  Q
    ||||||||||||||||||| |||||||||||||    
T  13450765 tgatgacagtcagtcattcactatttttagagt 13450733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 41620494 - 41620414
Alignment:
Q  52 gaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    ||||||||  |||||||||||  |||||||| |||||  |||||||| ||||||| ||||||||| | |||| |||| |||    
T  41620494 gaggattgaagtggataagtttcaagtatttttaaatattaagtttagttatttatgatccaaaatgacaaacaacagaga 41620414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 33 - 384
Target Start/End: Original strand, 27258249 - 27258598
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||||| ||||||| |||||||||||| ||| ||||||||||| ||||||  ||||| |||||||| || |||||||| ||||||| | |||||||||||    
T  27258249 agtagagtatcgatcccatgaggattgccgtagataagttctatgtattttcaaatgttaagtttagttgtttaagattcaaaaagactaataacaaaga 27258348  T
Q  133 caaggctgtaagattctaaa-tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattg 231  Q
    ||||| | |||||| ||||| | ||||||||| ||| |||||| |||||||        |   |||||||||||| ||||||| |||||||||||||||     
T  27258349 caaggttttaagatactaaagtcgtaaaatgcggaactaaataaagcatgtaaaaaggtt---ttagagattcaaatgaaaaagtgtggttaaggaatta 27258445  T
Q  232 acttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttat 331  Q
    |||||  |||||||  |||||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||    ||||  |||||| | || |||    
T  27258446 acttgacaaagataaaggtttgcaagatttaaaaaactacaattctgagatggaagctatagcttcgtacaacttttggaggaataatgtagaaagctat 27258545  T
Q  332 agcttcgcatagcttcctgggaacctaatggccactaggtgtattgtgcactt 384  Q
    || ||| ||||| ||||||| |||||  ||| |||| || || ||||||||||    
T  27258546 agtttcacatagtttcctggcaacctggtggtcactgggagtgttgtgcactt 27258598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 33 - 351
Target Start/End: Original strand, 40087764 - 40088083
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaa------taa 126  Q
    |||||| ||| ||| ||| || ||||| ||||||||||||||||||| ||  |||| |||||||||||||||||||||  |||||   |||      |||    
T  40087764 agtagagtattgatcccacgaagattgccgtggataagttctaagtactttcaaatactaagtttaattatttaagataaaaaaaaaaaaaaaaaaataa 40087863  T
Q  127 caaagacaaggctgtaagattctaaa-tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaag 225  Q
    |||||||| |  | |||||| ||||| |||||||||||| ||||||||| | |||||         |||||||||||||||| |||||| ||||||||||    
T  40087864 caaagacatgattttaagatactaaagtagtaaaatgcataagtaaataaaacatgtaaaaag---gaattagagattcaagcgaaaaagtgtggttaag 40087960  T
Q  226 gaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaag 325  Q
    |||   ||||||||||||||| | |||||| |||||||||| |||||||||| | ||| ||||||||||||||||||||||||| |||| | ||||||||    
T  40087961 gaa---acttggtaaagatagagatttgcaagatttagaaagctacaactctaagatgaaagctatagcttcgtacaacttcccgaggaaagatgtaaag 40088057  T
Q  326 agttatagcttcgcatagcttcctgg 351  Q
    || |||||||||||||||||||||||    
T  40088058 agctatagcttcgcatagcttcctgg 40088083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 33 - 306
Target Start/End: Original strand, 21201109 - 21201380
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||||| ||||||| |||||||||||| ||| ||||||||||| ||||||  ||||| |||||| | || |||| ||| ||||||| | |||||||||||    
T  21201109 agtagagtatcgatcccatgaggattgccgtagataagttctatgtattttcaaatgttaagttgagttgtttaggattcaaaaagactaataacaaaga 21201208  T
Q  133 caaggctgtaagattctaaa-tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattg 231  Q
    ||||| | ||| || ||||| | ||||||||| |||||||||| |||||||        |   |||||||||||| ||||||| |||||||||||||||     
T  21201209 caaggttataaaatactaaagtcgtaaaatgcggaagtaaataaagcatgtaaaaaggtt---ttagagattcaaatgaaaaagtgtggttaaggaatta 21201305  T
Q  232 acttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaactt 306  Q
    ||||   |||||||  |||||||| |||||| ||| |||| | ||||| ||||||||||||||||||||||||||    
T  21201306 acttcacaaagataaaggtttgcaagatttataaagctacgattctgagatggaagctatagcttcgtacaactt 21201380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 85 - 337
Target Start/End: Original strand, 44343741 - 44343988
Alignment:
Q  85 aaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggctgtaagattctaaat-agtaaaatgcagaagtaaatagagcatgtn 183  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||||||  | |||| | || ||| ||||| |||||  | |||||| |||||||     
T  44343741 aaatactaagtttaattatttaagatccaaaaagacaaacaacaaagacaagtttttaaggtactgaattagtaagatgcatgattaaataaagcatgta 44343840  T
Q  184 nnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatg 283  Q
           ||  ||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |  ||||| ||||||||||  ||||||| ||| |||    
T  44343841 aaa----tg--ttagagatttaagtgaaaaagtgtggttaaggaattaacttggtaaagatagagacttgcaagatttagaaaggtacaactttgaaatg 44343934  T
Q  284 gaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttatagcttc 337  Q
    |||| |||| |||| |||||||||||||  | | ||| ||||||||||| ||||    
T  44343935 gaagttataacttcatacaacttcccaaaaaaagatgcaaagagttataacttc 44343988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 54 - 350
Target Start/End: Complemental strand, 35945824 - 35945533
Alignment:
Q  54 ggattgtcgtggataagttctaagtatttctaaatgctaagtttaa-ttatttaagatccaaaaaggcaaataacaaagacaaggctgtaagattctaaa 152  Q
    ||||| |||| |||||||| |||||||||  |||| |||||||||| |||||| |||| ||||||| | |||||||||||||| | |     || |||||    
T  35945824 ggattatcgtagataagttttaagtattttcaaatactaagtttaaattatttgagattcaaaaagacgaataacaaagacaaagttt----atactaaa 35945729  T
Q  153 -tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtt 251  Q
     |||||||||  |||||||||| ||||||||         ||||| |||||| ||| |||||  ||||||||||||||| | |||||||| |||| |||     
T  35945728 gtagtaaaatatagaagtaaatggagcatgtaaaaag---gaattggagatttaagcgaaaagatgtggttaaggaattaaattggtaaatatagaggtc 35945632  T
Q  252 tgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttatagcttcgcatagcttcctg 350  Q
    |||| |||||||||| |||||| |||||||||||||||||||  ||||| || |||   |||| | |||||||||| |||| ||| |||||| ||||||    
T  35945631 tgcaagatttagaaagctacaaatctgatatggaagctatagagtcgtaaaatttcatgaggaaagatgtaaagagctataactttgcatagtttcctg 35945533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 195 - 364
Target Start/End: Original strand, 2915829 - 2915998
Alignment:
Q  195 ttagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagc 294  Q
    ||||||||| |||||||||| ||| ||||| ||||| ||||||| |||||||  |||| || || ||||||| |||||||||||| ||| |||||| | |    
T  2915829 ttagagattgaagtgaaaaagtgtcgttaaagaattaacttggtcaagatagaagttttcaagagttagaaagctacaactctgagatgaaagctacaac 2915928  T
Q  295 ttcgtacaacttcccaaggagaaatgtaaagagttatagcttcgcatagcttcctgggaacctaatggcc 364  Q
    |||||||||||| |  |  | ||||||| | |||||||||||| |||| |||||| | ||||| ||||||    
T  2915929 ttcgtacaactttctgataaaaaatgtagatagttatagcttcacataacttcctagcaacctgatggcc 2915998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 12782105 - 12782169
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  12782105 ttgatgacagtcagtcattcgctatttttagagtcattttatgatatttttgagtttacaagcaa 12782169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 27013229 - 27013287
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcac 440  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcac 27013287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 44809905 - 44809841
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  44809905 ttgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 44809841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 384 - 439
Target Start/End: Complemental strand, 52007431 - 52007375
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttca 439  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  52007431 tgatgacagtcagtcattcgctatttttagagtctttttatgatattgttgagttca 52007375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 29323979 - 29324042
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  29323979 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 29324042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 40794200 - 40794255
Alignment:
Q  392 gtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  40794200 gtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 40794255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 15430766 - 15430702
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||| ||||||  ||||||||||||||||||||||| |||||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaa 15430702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 15437380 - 15437316
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||| ||||||  ||||||||||||||||||||||| |||||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaa 15437316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 24045057 - 24045000
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||    
T  24045057 tgatgacagtcagtcattcgttatttttagagtctttttttgatatttttgagttcac 24045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 44164001 - 44164065
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||| |||||    
T  44164001 tgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaa 44164065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 19819950 - 19820014
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgata-tttttgagttcacgagcaa 446  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||    
T  19819950 tgatgacagtcagtcattcgctatttttaaagtctttttatgatattttttgagttcacaagcaa 19820014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 3718336 - 3718399
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagt-cttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||| |||||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  3718336 tgatgacagtcactcattcactatttttagagtatttttatgatatttttgagttcacaagcaa 3718399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 446
Target Start/End: Original strand, 21418987 - 21419042
Alignment:
Q  392 gtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  21418987 gtcagtcattcgctatttttagtgtctttttatgatatttttgagttcacaagcaa 21419042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 27677966 - 27677908
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcac 440  Q
    |||||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||    
T  27677966 tgatgacagtcagttattcactatttttagagtcttttttatgatatttttgagttcac 27677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 15431163 - 15431227
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  15431163 ttgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaa 15431227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 15437777 - 15437841
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  15437777 ttgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaa 15437841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 19826701 - 19826759
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgata-tttttgagttcac 440  Q
    |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  19826701 tgatgacagtcagtcattcgctatttttagagtctttttatgaaattttttgagttcac 19826759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 34320839 - 34320781
Alignment:
Q  389 acagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  34320839 acagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 34320781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 38284416 - 38284378
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38284416 ttgatgacagtcagtcattcgctatttttagagtctttt 38284378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 53010458 - 53010401
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  53010458 tgatgatagtcagtcattcattatttttagagtctttttatgatatttttgagttcac 53010401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 34018699 - 34018662
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  34018699 tgatgacagtccgtcattcgctatttttagagtctttt 34018662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 48416448 - 48416411
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  48416448 tgatgacagtccgtcattcgctatttttagagtctttt 48416411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 35509201 - 35509262
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtcttt-tatgatatttttgagttcacgagcaa 446  Q
    |||| ||||||||||||||| |||||||  ||||||| |||||||||||||||||||| |||||    
T  35509201 tgataacagtcagtcattcgttattttt--agtctttatatgatatttttgagttcacaagcaa 35509262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 14571026 - 14571089
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||| ||| |||||||   |||||||||||||||| ||||||||||||||||||| |||||    
T  14571026 tgatgacggtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 14571089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 27692026 - 27691961
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||| | |||||||| ||||||||||||||  ||||| ||||||||||| ||||| |||||    
T  27692026 ttgatgacaattagtcattcactatttttagagtcttttttacgatatttttgaattcacaagcaa 27691961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 3798796 - 3798733
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  3798796 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 3798733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 5669628 - 5669691
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  5669628 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 5669691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 5721845 - 5721808
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  5721845 attgttgaaaacgtgtcacgatttgaagcacaggatga 5721808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 18910604 - 18910667
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  18910604 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 18910667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 33410962 - 33410899
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  33410962 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 33410899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 40617824 - 40617787
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  40617824 tgatgacagtccgtcattcgctattttgagagtctttt 40617787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 48636709 - 48636746
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  48636709 tgatgacagtctgtcattcgttatttttagagtctttt 48636746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 52531833 - 52531796
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  52531833 tgatgacagcccgtcattcgctatttttagagtctttt 52531796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 2915675 - 2915754
Alignment:
Q  35 tagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaa 115  Q
    |||| ||||||| |||| || ||||  ||| ||| |||||||||||||| |||| |||||  |||||||||||||||||||    
T  2915675 tagagtatcgatcccataagaattgaagtgaataggttctaagtatttccaaat-ctaagcataattatttaagatccaaa 2915754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 5680469 - 5680525
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttca 439  Q
    ||||||||| | |||||||   |||||||||||||||| ||||||||||||||||||    
T  5680469 tgatgacagactgtcattccacatttttagagtctttttatgatatttttgagttca 5680525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 19865646 - 19865580
Alignment:
Q  381 acttgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||| || ||||||| |||  ||| |||||| |||||||||||| |||||    
T  19865646 acttgatgacagtcagtcattcactgtttttagtgtcattttcatgata-ttttgagttcacaagcaa 19865580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 40 - 351
Target Start/End: Original strand, 25436798 - 25437103
Alignment:
Q  40 tatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggct 139  Q
    ||||||| ||| ||||||||| |||||||||||||||||| ||  |||| |||| |||     |||||||||||||| |  ||||| ||| ||||||| |    
T  25436798 tatcgatcccacgaggattgttgtggataagttctaagtactttcaaatactaaatttt----tttaagatccaaaacgataaatagcaaggacaaggtt 25436893  T
Q  140 gtaagattctaaa-tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattgacttggt 238  Q
     || ||| ||||| |||||||||||||||||||||| |||||||         ||| ||||||||||||||||||| ||||||| ||||||| |||||||    
T  25436894 ttatgatgctaaagtagtaaaatgcagaagtaaataaagcatgtaaaaag---gaaatagagattcaagtgaaaaagtgtggttgaggaattaacttggt 25436990  T
Q  239 aaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttatagcttcg 338  Q
    |||||||| | ||  || ||||||||||  ||||||||| | ||||||||||||||||| ||||||||||| |||| | |||||||| |||||| |||||    
T  25436991 aaagatagagattcacaagatttagaaagttacaactctaagatggaagctatagcttcatacaacttcccgaggaaagatgtaaagtgttataacttcg 25437090  T
Q  339 catagcttcctgg 351  Q
    |||||||||||||    
T  25437091 catagcttcctgg 25437103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 40 - 344
Target Start/End: Original strand, 25461785 - 25462088
Alignment:
Q  40 tatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggct 139  Q
    ||||||| ||| |||||||| | ||||||||||||||||| ||  |||| |||||||||||||||||| || |||||||  |||||  || ||||||| |    
T  25461785 tatcgatcccacgaggattgacatggataagttctaagtactttcaaatactaagtttaattatttaaaattcaaaaagagaaatattaaggacaaggtt 25461884  T
Q  140 gtaagattctaaa-tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaat-tgtggttaaggaattgacttgg 237  Q
     |||||| ||||| ||||||||||||||| |||||| |||||||         |||||||||||||||||||||||  ||| | ||||||||| ||||||    
T  25461885 ctaagatactaaagtagtaaaatgcagaaataaataaagcatgtaaaaaa---gaattagagattcaagtgaaaaaagtgtagctaaggaattaacttgg 25461981  T
Q  238 taaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttatagcttc 337  Q
    ||||||||| | ||| || ||||||||||  ||||||| ||| || |||||||||||||| |||||||| || |||| | |||||||||| |||||||||    
T  25461982 taaagatagagatttacaagatttagaaatttacaactatgagatagaagctatagcttcatacaactttccgaggaaatatgtaaagagctatagcttc 25462081  T
Q  338 gcatagc 344  Q
     ||||||    
T  25462082 acatagc 25462088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 10289186 - 10289249
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  10289186 tgatgacagtaagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 10289249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 28666176 - 28666113
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  28666176 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaa 28666113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 29178766 - 29178868
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||||||||||||| ||| ||||||||  |||||||||||||||||||||  |||| |||||||||  || ||||  ||||||| |  ||| ||||||||    
T  29178766 agtagaatatcgatcccacgaggattgaagtggataagttctaagtattttcaaatactaagtttaggtagttaatgtccaaaatgataaacaacaaaga 29178865  T
Q  133 caa 135  Q
    |||    
T  29178866 caa 29178868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 29178931 - 29179040
Alignment:
Q  195 ttagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactct--gatatggaagctata 292  Q
    |||||||||||||||||||  |||||||||| |||| | ||| ||||||||| |||||| | |||||||||   |||||||||  | |||||||| ||||    
T  29178931 ttagagattcaagtgaaaatatgtggttaagaaattaatttgataaagatagaggtttgtaagatttagaacgttacaactctaagttatggaagttata 29179030  T
Q  293 gcttcgtaca 302  Q
    ||||| ||||    
T  29179031 gcttcataca 29179040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 12981188 - 12981150
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttta 422  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12981188 tgatgacagtcagtcattcactatttttagagtctttta 12981150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 2378435 - 2378472
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2378435 tgatgacagtccgtcattcgctatttttagagtctttt 2378472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 15543215 - 15543252
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  15543215 tgatgacagtccgtcattcgctatttttagagtctttt 15543252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 20181288 - 20181336
Alignment:
Q  399 attcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  20181288 attcgctatttttagagtccttttgtgatatttttgagttcacaagcaa 20181336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 22154703 - 22154655
Alignment:
Q  399 attcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  22154703 attcgctatttttagagtccttttgtgatatttttgagttcacaagcaa 22154655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 9953036 - 9953099
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||| ||||||    |||||||||||||||| ||||||||||||||||||| |||||    
T  9953036 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaa 9953099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 22463514 - 22463552
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  22463514 ttgatgacagtcagtcatacactatttttagagtctttt 22463552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 5739190 - 5739153
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  5739190 tgatgacagtcagtcattcactatttttagagtttttt 5739153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 9314804 - 9314767
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  9314804 tgatgacagtcagtcatacactatttttagagtctttt 9314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 11188835 - 11188798
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||  |||||||||||||||||||||||||    
T  11188835 tgatgacagtccatcattcgctatttttagagtctttt 11188798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 21633551 - 21633588
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  21633551 tgatgacagtcagtcatacactatttttagagtctttt 21633588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 23379687 - 23379650
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  23379687 attgttgaaaacgtgtcacgatttggagcacatgatga 23379650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 23389026 - 23388989
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  23389026 attgttgaaaacgtgtcacgatttggagcacatgatga 23388989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 28116940 - 28116977
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  28116940 tgatgacagtcagtcatacactatttttagagtctttt 28116977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 28229800 - 28229837
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28229800 tgatgacagtccgtcattcgctattttgagagtctttt 28229837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 30654648 - 30654685
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30654648 tgatgacagtccgtcattcgctatttctagagtctttt 30654685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 40 - 337
Target Start/End: Complemental strand, 8120848 - 8120553
Alignment:
Q  40 tatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgct-aagtttaattatttaagatccaaaaaggcaaataacaaagacaaggc 138  Q
    ||||||| |||  |||||| || ||||||||||| |||||||||  |||| | ||||||||||||||||||||||| ||| ||||||||||| |||| |     
T  8120848 tatcgatcccacaaggattatcatggataagttcaaagtatttccgaatgattaagtttaattatttaagatccaacaagacaaataacaaaaacaatgt 8120749  T
Q  139 tgtaagattctaaa-tagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattgacttgg 237  Q
    | ||||||  |||| |||||||||||||||||||||| |||||||         ||||||||||||||||| |||||| ||||||||||| || ||||||    
T  8120748 tttaagatagtaaagtagtaaaatgcagaagtaaataaagcatgtaaaaag---gaattagagattcaagtaaaaaat-gtggttaaggagttaacttgg 8120653  T
Q  238 taaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttatagcttc 337  Q
    ||||||||  |||||||| |||||||||| |||||| | ||| | ||||  ||||||||||||||||||||  |||| | |||||||| | |||||||||    
T  8120652 taaagataaaggtttgcaagatttagaaagctacaattttgagaaggaatttatagcttcgtacaacttccagaggaaagatgtaaagtgatatagcttc 8120553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 18826835 - 18826771
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  18826835 ttgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 18826771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 12582217 - 12582281
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  12582217 ttgatgaaaatcaatcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 12582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 19792926 - 19792990
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||| | ||||| ||||||||||||||  ||||||||||||||||||||||| |||||    
T  19792926 tgatgacagtcggccattcactatttttagagtcttttttatgatatttttgagttcacaagcaa 19792990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 16952997 - 16953035
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  16952997 ttgatgacagtccgtcattcgctatttttagagtctttt 16953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 25228039 - 25228077
Alignment:
Q  408 ttttagagtcttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  25228039 ttttagagtcttttatgatatttttgagttcacaagcaa 25228077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 27423251 - 27423329
Alignment:
Q  195 ttagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaa 273  Q
    |||||||||||||||||||| |||||||||| |||| |||| ||||| |||   ||||| | |||||||||| ||||||    
T  27423251 ttagagattcaagtgaaaaagtgtggttaagaaattaacttagtaaaaataaatgtttgtaagatttagaaagctacaa 27423329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 10663011 - 10663048
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10663011 tgatgacagtcagtcattcactatttttagagtctttt 10663048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 31984107 - 31984144
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31984107 tgatgacagtcaatcattcgctatttttagagtctttt 31984144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 554
Target Start/End: Complemental strand, 5540879 - 5540832
Alignment:
Q  507 tcatgccacaattgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||| ||| ||||||||||||||||| |||||||||||||| |||||    
T  5540879 tcatgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatga 5540832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 5540995 - 5540932
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||  |||||||   |||||||||||||||| ||||||||||||||||||| |||||    
T  5540995 tgatgacagtttgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 5540932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 5981220 - 5981157
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||| ||||||    |||||||||||||||| ||||||||||||||||||| |||||    
T  5981220 tgatgacagtccgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaa 5981157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 45156918 - 45156855
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||   ||||||  ||||||||||||||||| ||||||||||||||||||| |||||    
T  45156918 tgatgacagtttatcattctatatttttagagtctttttatgatatttttgagttcacaagcaa 45156855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 13096045 - 13096087
Alignment:
Q  379 gcacttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||    
T  13096045 gcacttgatgacagtcagttattcactatttttagagtttttt 13096087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 17895527 - 17895490
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  17895527 tgatgacagtccgtcattcgctatttctagagtctttt 17895490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 20261647 - 20261684
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  20261647 tgatgacagtcagtcatacactatttttagagtctttt 20261684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 21048277 - 21048314
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  21048277 tgatgacagtcagtcatacactatttttagagtctttt 21048314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 25595558 - 25595521
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  25595558 attgttgaaaacgtgtcacgatttggagcacatgatga 25595521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 446
Target Start/End: Original strand, 30640503 - 30640570
Alignment:
Q  382 cttgatgacagtcagtcattcgctatttttagagtc---ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||| |||||| ||||||| ||| ||   |||||||||| |||||||||||| |||||    
T  30640503 cttgatgacagtcaatcattcactattttaagaatctttttttatgatacttttgagttcacaagcaa 30640570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 14420863 - 14420927
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||  ||||||   |||||||||||||||| ||||||||||| ||||||| |||||    
T  14420863 ttgatgacagtctctcattccacatttttagagtctttttatgatattttttagttcacaagcaa 14420927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 33 - 367
Target Start/End: Original strand, 39311843 - 39312171
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaa-taacaaag 131  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||| |||||| |||| |||  |||    
T  39311843 agtagaatatcgatctcacgaggattgtcgtggataagttctaagtattttcaaacactaagtttaattatttaagatctaaaaagacaaaataatgaag 39311942  T
Q  132 acaaggctgtaagattctaaat-agtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaatt 230  Q
    |||||  | | ||||  | ||  ||||||||    ||||| ||| ||||| |          |||||||||||||||||||||| |||||||||||||||    
T  39311943 acaagagttttagatattgaagcagtaaaat----aagtagataaagcatataaaaga----aattagagattcaagtgaaaaagtgtggttaaggaatt 39312034  T
Q  231 gacttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagtta 330  Q
     ||||| ||||||||| |||||||| |||||||||| |||||||||||  || |||| |||| ||||||||||||| |  |||| | |||||   |  ||    
T  39312035 aacttgataaagatagaggtttgcaagatttagaaagctacaactctgtgattgaagatataacttcgtacaactttctgaggaaagatgtagcaaacta 39312134  T
Q  331 tagcttcgcatagcttcctgggaacctaatggccact 367  Q
    ||||||||||||||||||| | |||||  ||||||||    
T  39312135 tagcttcgcatagcttcctagcaacctggtggccact 39312171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 56 - 307
Target Start/End: Original strand, 16799058 - 16799304
Alignment:
Q  56 attgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggctgtaagattctaaatag 155  Q
    ||||| |||||||||||||||||||||  ||||| |||||||| |||||||||||||||    | ||| |||||||| |||| ||||||||||| ||  |    
T  16799058 attgtagtggataagttctaagtattttcaaatggtaagtttagttatttaagatccaagggtgtaaagaacaaagataaggttgtaagattcttaa--g 16799155  T
Q  156 taaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgca 255  Q
    ||||||| | || ||||||  |||||          ||||||||||||||||||||||  |||||| |||||||| |||||||||| |||| ||||||||    
T  16799156 taaaatgaaaaactaaataaggcatgcaataaa---gaattagagattcaagtgaaaacgtgtggtaaaggaattaacttggtaaaaatagaggtttgca 16799252  T
Q  256 tgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttc 307  Q
     |||||||||| ||||||| |||| ||||||| |||| |||| |||||||||    
T  16799253 agatttagaaagctacaacgctgagatggaagttataacttcatacaacttc 16799304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 21019367 - 21019313
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtcttttatgatatttttgagttc 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtcttttatgatatttttgagttc 21019313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 2404722 - 2404785
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtctttttataatatttttgagttcacaagcaa 2404785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 41059234 - 41059178
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttc 438  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  41059234 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttc 41059178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 302
Target Start/End: Complemental strand, 25291964 - 25291739
Alignment:
Q  74 taagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggctgtaagattctaaatagtaaaatgcagaagtaaat 173  Q
    |||||||||  |||| ||||||||| ||||||||||||||||| | ||||||||||| |  | | | |||||| ||||||  |||||||||  |||||||    
T  25291964 taagtattttcaaatactaagtttagttatttaagatccaaaatgacaaataacaaaaatgaagttttaagatactaaat--taaaatgcaagagtaaat 25291867  T
Q  174 agagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaa 273  Q
    | | |||||         || |||||||||||||||||||  ||  |||||| |||| ||||| | ||||||| |||||||| |||||||||| |||||     
T  25291866 aaaacatgtaaaaag---gatttagagattcaagtgaaaagatgcagttaagtaattaacttgatcaagatagaggtttgcaagatttagaaagctacag 25291770  T
Q  274 ctctga--tatggaagctatagcttcgtaca 302  Q
    ||| ||  |||||||  ||||||||||||||    
T  25291769 ctcagagttatggaaattatagcttcgtaca 25291739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 45961707 - 45961644
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctt-ttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||    
T  45961707 tgatgacagtcagtcatttgctatttttagagtcttgttatgataattttgagttcacaagcaa 45961644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 434
Target Start/End: Complemental strand, 21108394 - 21108342
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctt-ttatgatatttttga 434  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  21108394 ttgatgacagtcagtcattcgctctttttagagtcttcttatgatatttttga 21108342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 446
Target Start/End: Original strand, 42021717 - 42021784
Alignment:
Q  380 cacttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||  ||||||||| |||||    
T  42021717 cacttgatgacagtcaatcattcgctatttttagagtctttttataatattactgagttcacaagcaa 42021784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 27537212 - 27537150
Alignment:
Q  385 gatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| |||||||||||| |||||    
T  27537212 gatgacagtcagtcatttgctatttttatagtctttttatgataattttgagttcacaagcaa 27537150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 45940621 - 45940658
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45940621 tgatgacagtcagtcattcgctatttttagagtctttt 45940658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 22460444 - 22460405
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttta 422  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  22460444 ttgatgacagtcagtcattcactatttttagagtctttta 22460405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 1635953 - 1636023
Alignment:
Q  62 gtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||| ||||||||  ||||||| |||||||||||||| ||||| || |||||||| | |||||||||||||    
T  1635953 gtggttaagttctgtgtatttccaaatgctaagtttagttattcaaaatccaaaatgacaaataacaaaga 1636023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 28110282 - 28110320
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  28110282 ttgatgacagtccgtcattcgctatttttagagtctttt 28110320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 2793299 - 2793362
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||| ||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  2793299 tgatgacagtcagtcgttcactatttttagagtctttttaatgata-ttttgagttcacaagcaa 2793362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 37184783 - 37184746
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  37184783 tgatgacagtccgtcattcgctatttttagagtctttt 37184746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 47708817 - 47708780
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  47708817 tgatgacagtcagtcattcactatttttagagtctttt 47708780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 29644308 - 29644245
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||| |||||||   |||| ||||||||||| ||||||||||||||||||| |||||    
T  29644308 tgatgacagtctgtcattccacatttatagagtctttttatgatatttttgagttcacaagcaa 29644245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 422
Target Start/End: Original strand, 49147112 - 49147151
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttta 422  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  49147112 ttgatgacagtcaatcattcactatttttagagtctttta 49147151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 22454319 - 22454281
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttta 422  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  22454319 tgatgacagtcagtcattcactatttttagaatctttta 22454281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 2793425 - 2793462
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  2793425 attgttgaaaacgtgtcacgatttgaagcacaggatga 2793462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 3088735 - 3088698
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  3088735 tgatgacagtcagtcatgcactatttttagagtctttt 3088698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 20398067 - 20398104
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  20398067 tgatgacagtccgtcattcgctatttctagagtctttt 20398104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 23022843 - 23022806
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  23022843 tgatgacagtccgtcattcgttatttttagagtctttt 23022806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 34 - 343
Target Start/End: Original strand, 15827985 - 15828290
Alignment:
Q  34 gtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagac 133  Q
    ||||| ||||||| ||| || |||||||| |||||||||||||||| || ||||| ||| |||||||||||| ||||  |||||| ||||||||||||||    
T  15827985 gtagagtatcgatcccacgacgattgtcgaggataagttctaagtacttttaaatactaggtttaattatttgagataaaaaaagacaaataacaaagac 15828084  T
Q  134 aaggctgtaagattctaaa-tagtaaaatgcagaagta-aatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattg 231  Q
    || |  ||||||| ||||| ||| ||||  || ||||| |||| |||||||         ||||||||||||| ||| ||||  |||||||||||||       
T  15828085 aatgtagtaagatactaaagtagcaaaaatcataagtataataaagcatgtaaaagg---gaattagagattcgagtaaaaacatgtggttaaggaa--- 15828178  T
Q  232 acttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttat 331  Q
    |||||||||||||||  ||||||| |||||  ||| | |||||||||| |||||| |||||| ||||||||||||||| | |  ||||||| |||||| |    
T  15828179 acttggtaaagatagatgtttgcaagattttaaaatccacaactctgagatggaaactatagtttcgtacaacttcccgatgtaaaatgtagagagttgt 15828278  T
Q  332 agcttcgcatag 343  Q
    |||||| |||||    
T  15828279 agcttcacatag 15828290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 42294841 - 42295150
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||||| ||||||| | | ||||||||  ||||||| ||  |||||||||| |||||||||||||| |||||||||| |||||  |  |||||  |||||    
T  42294841 agtagagtatcgatccgacgaggattggagtggataggtcgtaagtatttccaaatgctaagtttagttatttaagacccaaagtgaaaaatagtaaaga 42294940  T
Q  133 caaggctgtaagattctaaatagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaaggaattga 232  Q
     |||  | |||| |||||||  |||||||||||||||||||| |||||||        |   ||||||||||| |||||||| | | ||||||||||| |    
T  42294941 taagattttaaggttctaaa--gtaaaatgcagaagtaaataaagcatgtcaaaagaat---ttagagattcatgtgaaaaagtattgttaaggaattaa 42295035  T
Q  233 cttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaagagttata 332  Q
    ||||||||| |||| | |||| | |||||| ||| |||||||||  | ||||||| ||||| || |||||||||||  || | ||| ||| |||||||||    
T  42295036 cttggtaaaaatagagatttgtaagatttataaagctacaactcgcagatggaagttatagtttggtacaacttccagagaaaaaacgtatagagttata 42295135  T
Q  333 gcttcgcatagcttc 347  Q
     |||| |||||||||    
T  42295136 ccttcacatagcttc 42295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 33 - 275
Target Start/End: Complemental strand, 26312971 - 26312726
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaaga 132  Q
    |||||| |||||||  ||| |||||||  ||  |||||||| |||||||| ||||||||||||||| |||||||||||||||||   |||||||||||||    
T  26312971 agtagagtatcgatcgcataaggattgaagttaataagttccaagtatttataaatgctaagtttagttatttaagatccaaaataacaaataacaaaga 26312872  T
Q  133 caaggctgtaagattctaa------atagtaaaatgcagaagtaaatagagcatgtnnnnnnnntgaattagagattcaagtgaaaaattgtggttaagg 226  Q
     |||  | |||||||||||      | ||||||||||| ||||||||| | |||||         || |||||||||||| ||||||  ||||||||| |    
T  26312871 taagattttaagattctaagacattaaagtaaaatgcacaagtaaataaaacatgtaaaaaa---gatttagagattcaattgaaaagatgtggttaaag 26312775  T
Q  227 aattgacttggtaaagatagtggtttgcatgatttagaaaactacaact 275  Q
    |||| ||||| ||||||||| |||||||| |||||||||| ||| ||||    
T  26312774 aattaacttgctaaagatagaggtttgcacgatttagaaagctataact 26312726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 38716635 - 38716514
Alignment:
Q  53 aggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagacaaggctgtaagattctaaa 152  Q
    |||||||  ||| |||| |||||||||||| ||||||||| ||||| ||||||||||||||||| | ||||||||||||| |||  | || |||||||||    
T  38716635 aggattggagtgaataaattctaagtatttttaaatgctacgtttagttatttaagatccaaaatgacaaataacaaagataagattttaggattctaaa 38716536  T
Q  153 tagtaaaatgcagaagtaaata 174  Q
    ||||||||| ||||||||||||    
T  38716535 tagtaaaatccagaagtaaata 38716514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 5665829 - 5665893
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5665829 ttgatgacagtcaatcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 5665893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 16788389 - 16788451
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtcttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||    
T  16788389 tgatgacagtcagtcatttgctatttttagaatcttttatgataattttgagttcacaagcaa 16788451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 43722903 - 43722967
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  43722903 ttgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagttcacaagcaa 43722967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 10599951 - 10600014
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||    
T  10599951 tgatgacagtcagtcattcactatttttagaatctttttatgatatttttgagttcacaagcaa 10600014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 38014636 - 38014699
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  38014636 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 38014699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 13972813 - 13972756
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  13972813 tgatgacagtcaatcattcgttatttttagagtctttttatgatatttttgagttcac 13972756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 13136764 - 13136819
Alignment:
Q  386 atgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  13136764 atgacagtcagtcatttgttatttttagagtcattttatgatatttttgagttcac 13136819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 31430638 - 31430575
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  31430638 tgatgacagttagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 31430575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 31586824 - 31586786
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31586824 ttgatgacagtcagtcattcgctatttttagagtctttt 31586786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 3874482 - 3874539
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||||||||||||||||  ||||||||||||| ||||| |||||||||||||||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtctttttaggatatttttgagttcac 3874539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 9189572 - 9189535
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9189572 tgatgacagtcagtcattcgctatttttagagtctttt 9189535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 25873203 - 25873266
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  25873203 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaa 25873266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 37280596 - 37280559
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37280596 tgatgacagtcagtcattcgctatttttagagtctttt 37280559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 43208809 - 43208772
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43208809 tgatgacagtcagtcattcgctatttttagagtctttt 43208772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 15826415 - 15826499
Alignment:
Q  33 agtagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaa 117  Q
    |||||| ||||||| | | ||| ||||||||||||||||| |||||| ||  |||| |||||||||||||||||| || ||||||    
T  15826415 agtagagtatcgatcctacgagaattgtcgtggataagttataagtactttcaaatactaagtttaattatttaaaattcaaaaa 15826499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 25869834 - 25869892
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcac 440  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||    
T  25869834 ttgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcac 25869892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 38716184 - 38716085
Alignment:
Q  195 ttagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctga--tatggaagctata 292  Q
    |||||| ||||||||||||| | ||||||| ||||| |||| ||||| |||| ||||| || |||||| ||| ||||||||| ||  |||||||||||||    
T  38716184 ttagaggttcaagtgaaaaaatatggttaatgaattaacttagtaaacatagaggtttacaagatttataaagctacaactcggagttatggaagctata 38716085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 6825974 - 6826037
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    |||||||||||| ||||||| ||| |||| |||||||| ||||||||||||||||||| |||||    
T  6825974 tgatgacagtcaatcattcgttatatttaaagtctttttatgatatttttgagttcacaagcaa 6826037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 40780657 - 40780695
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  40780657 ttgatgacagtcaatcattcgctatttttagagtctttt 40780695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 8887842 - 8887879
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8887842 tgatgacagtccgtcattcgctatttttagagtctttt 8887879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 9186343 - 9186306
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9186343 tgatgacagttagtcattcgctatttttagagtctttt 9186306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 25957363 - 25957326
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  25957363 tgatgacagtccgtcattcgctatttttagagtctttt 25957326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 5104953 - 5105014
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||  ||||||||| |||| ||||||||||||||||||| |||||    
T  5104953 tgatgacagtcagtcattcact--ttttagagtttttttatgatatttttgagttcacaagcaa 5105014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 34121709 - 34121820
Alignment:
Q  195 ttagagattcaagtgaaaaattgtggttaaggaattgacttggtaaagatagtggtttgcatgatttagaaaactacaactctgatatggaagctatagc 294  Q
    |||| |||||||||||||| | |||||||| ||| | |||||||||| |||| |||||  | |||||||| | |||||||| ||  |||||||||||||     
T  34121709 ttagcgattcaagtgaaaagt-gtggttaaagaactaacttggtaaaaatagaggtttataagatttagacagctacaactttgtgatggaagctatagg 34121807  T
Q  295 ttcgtacaacttc 307  Q
    | | |||||||||    
T  34121808 tacatacaacttc 34121820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 25960590 - 25960552
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  25960590 ttgatgacagtccatcattcgctatttttagagtctttt 25960552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 36809436 - 36809372
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  36809436 ttgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 36809372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 42369621 - 42369583
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  42369621 ttgatgacagtccgtcattcgctatttctagagtctttt 42369583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 24237554 - 24237591
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  24237554 tgatgacagtccgtcattcgctattcttagagtctttt 24237591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 25140040 - 25139983
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcac 440  Q
    |||||||||||||||||||   | ||||||||| |||| |||||||||||||||||||    
T  25140040 tgatgacagtcagtcattccacaattttagagtttttttatgatatttttgagttcac 25139983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 25955819 - 25955856
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||  |||||||||||||||||||||||||    
T  25955819 tgatgacagtccttcattcgctatttttagagtctttt 25955856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 30148608 - 30148645
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30148608 tgatgacagtccgtcattcgctatttctagagtctttt 30148645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 226 - 346
Target Start/End: Original strand, 624379 - 624500
Alignment:
Q  226 gaattgacttggtaaagatagtggtttgcatgatttagaaaa-ctacaactctgatatggaagctatagcttcgtacaacttcccaaggagaaatgtaaa 324  Q
    ||||| |||||||||| |||| |||||||| ||||||||||| |||||||||| | ||||||| |||||||||||||||||||   |||| ||||||| |    
T  624379 gaattaacttggtaaaaatagaggtttgcaggatttagaaaagctacaactctaagatggaagttatagcttcgtacaacttcatgaggaaaaatgtaga 624478  T
Q  325 gagttatagcttcgcatagctt 346  Q
    |||||||||||| |||||||||    
T  624479 gagttatagctttgcatagctt 624500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 7270241 - 7270304
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  7270241 tgatgacagtctgtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 7270304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 21828041 - 21827985
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttc 438  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  21828041 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttc 21827985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 14017036 - 14016973
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  14017036 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttcacaagcaa 14016973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 28788401 - 28788338
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||    
T  28788401 tgatgacagtcagtcatttgctatttttagagtctttttatgatattttttagttcacaagcaa 28788338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 623615 - 623717
Alignment:
Q  35 tagaatatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaaaaggcaaataacaaagaca 134  Q
    |||| ||| ||| ||| ||||||||  ||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||||| | |||| |||||||| |    
T  623615 tagagtatggatcccacgaggattggagtggatacgttatgagtatgtctaaatgctaagtttaattatttaagattcaaaatgacaaacaacaaagata 623714  T
Q  135 agg 137  Q
    |||    
T  623715 agg 623717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 21336742 - 21336678
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||||| |||||    
T  21336742 tgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaa 21336678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 17747617 - 17747673
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttca 439  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||    
T  17747617 tgatgacagtcagtcatttgctatttttagagtctttttatgataattttgagttca 17747673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 432
Target Start/End: Original strand, 25329455 - 25329505
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagag-tcttttatgatattttt 432  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  25329455 ttgatgacagtcagtcattcgctatttttagagtttttttatgatattttt 25329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 40916889 - 40916823
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc----ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||| |||||||||||||||    |||||| |||||||||||||||| |||||    
T  40916889 tgatgacagtcagtcatttgctatttttagagtcttttttttatcatatttttgagttcacaagcaa 40916823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 41307445 - 41307408
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41307445 tgatgacagtcagtcattcgctatttttagagtctttt 41307408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 25329548 - 25329509
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtcttttat 423  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  25329548 tgatgacagtcagtcattcgctatttttagagttttttat 25329509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 30065562 - 30065625
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||| ||| ||||||| ||||||||||||| ||||||||||||||||| ||||| |||||    
T  30065562 tgatgacaatcattcattcgttatttttagagtctttttatgatatttttgaattcacaagcaa 30065625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 39191333 - 39191394
Alignment:
Q  386 atgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||| ||||| | ||||||||||||| |||||||||| |||||||||||| |||||    
T  39191333 atgacagtcaatcatttgttatttttagagtctttttatgatacttttgagttcacaagcaa 39191394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 42061612 - 42061649
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  42061612 attgttgaaaacgtgtcacgatttgaagcacatgatga 42061649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 4100431 - 4100380
Alignment:
Q  389 acagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcac 440  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  4100431 acagtcagttattcgctatttt-agagtctttttatgatatttttgagttcac 4100380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 32837082 - 32837146
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    |||||||||||  |||||||   |||||||||||||||| ||||||||||||||||||| |||||    
T  32837082 ttgatgacagtatgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 32837146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 37214765 - 37214829
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||| |||||| |||||||   |||||||||||||||| ||||||||||||||||||| |||||    
T  37214765 ttgataacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 37214829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 9779747 - 9779672
Alignment:
Q  40 tatcgataccatgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagatccaaa 115  Q
    ||||||| | ||||||||||  ||||||||||| |||  |||| |||||  |||||||| ||||||||||||||||    
T  9779747 tatcgatccgatgaggattgatgtggataagttttaatcatttttaaatattaagtttagttatttaagatccaaa 9779672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 22938055 - 22937992
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||| |||||||    ||||||||||||||| ||||||||||||||||||| |||||    
T  22938055 tgatgacagtctgtcattccacgtttttagagtctttttatgatatttttgagttcacaagcaa 22937992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 34830976 - 34831014
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  34830976 ttgatgacagtccgtcattcgctatttctagagtctttt 34831014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 41877684 - 41877646
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  41877684 ttgatgacagtccgtcattcgctatttctagagtctttt 41877646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 2836702 - 2836743
Alignment:
Q  406 atttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  2836702 atttttagagtctttttatgatatttttgagttcacaagcaa 2836743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 12087152 - 12087189
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  12087152 tgatgacagtccgtcattcgctatttctagagtctttt 12087189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 14376834 - 14376771
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  14376834 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 14376771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 26753620 - 26753583
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  26753620 tgatgacagtccgtcattcgttatttttagagtctttt 26753583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 28442181 - 28442118
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||| |||||||||||| |||||    
T  28442181 tgatgacagtcagtcattcactatttttagtgtcattttcatgata-ttttgagttcacaagcaa 28442118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 43490793 - 43490850
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcac 440  Q
    ||||||||||| ||||||    |||||||||||||||| |||||||||||||||||||    
T  43490793 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcac 43490850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 18031710 - 18031766
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttca 439  Q
    |||||| |||| |||||||  ||||||||||||| |||||||||||||| |||||||    
T  18031710 tgatgatagtccgtcattccatatttttagagtctttttatgatattttcgagttca 18031766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 450
Target Start/End: Original strand, 54460367 - 54460434
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaatctt 450  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||    
T  54460367 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaatctt 54460434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 385 - 446
Target Start/End: Original strand, 9380012 - 9380074
Alignment:
Q  385 gatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 9380074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 53814970 - 53815034
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  53814970 ttgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaa 53815034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 16243166 - 16243229
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  16243166 tgatgacaatcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaa 16243229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 34984758 - 34984695
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaa 34984695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 29344773 - 29344709
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctt--ttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||    
T  29344773 tgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaa 29344709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 10880775 - 10880839
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  10880775 ttgatgacagtcagttatttgctatttttagagtctttttatgatatttttgagttcacaagcaa 10880839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 41976321 - 41976384
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagt-cttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||| |||||    
T  41976321 tgatgacagtcagtcattcgctatttttagagtgtttttataatatttttgagttcacaagcaa 41976384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 20729478 - 20729413
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagag--tcttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||| |||||    
T  20729478 ttgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaa 20729413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 897045 - 896984
Alignment:
Q  49 catgaggattgtcgtggataagttctaagtatttctaaatgctaagtttaattatttaagat 110  Q
    |||||||||| ||||||||||| |||||| ||||  |||||| |||||||||||||||||||    
T  897045 catgaggattttcgtggataagctctaagaattttcaaatgccaagtttaattatttaagat 896984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 3839790 - 3839856
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt----atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||| ||||    ||||||||||||||||||| |||||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaa 3839856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Original strand, 10884018 - 10884081
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaa 10884081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 23299553 - 23299490
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||| |||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaa 23299490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 538014 - 538072
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcac 440  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||    
T  538014 ttgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcac 538072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 43808881 - 43808941
Alignment:
Q  387 tgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  43808881 tgacagttagttattcgttatttttagagtctttttatgatatttttgagttcacaagcaa 43808941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 6921889 - 6921953
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt--atgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||||||||| |||||  |||||| |||||||||||| |||||    
T  6921889 ttgatgacagtcagtcattcactatttttagagcctttttcatgata-ttttgagttcacaagcaa 6921953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 16185656 - 16185599
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcac 440  Q
    ||||||||||| |||||||   |||||||||||||||| |||||||||||||||||||    
T  16185656 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcac 16185599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 43926124 - 43926161
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  43926124 tgatgacagtccgtcattcgctatttttagagtctttt 43926161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 31857055 - 31857091
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtcttt 420  Q
    ||||||||||||||||||| |||||||||||||||||    
T  31857055 tgatgacagtcagtcattcactatttttagagtcttt 31857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 19302364 - 19302301
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    |||||| |||| ||||||   ||||||||||||||||| ||||||||||||||||||| |||||    
T  19302364 tgatgatagtccgtcatttcatatttttagagtctttttatgatatttttgagttcacaagcaa 19302301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 54736842 - 54736787
Alignment:
Q  392 gtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||| |||||| |||||||||||||| |||||||||| |||||||||||| |||||    
T  54736842 gtcaatcattcactatttttagagtctttttatgatacttttgagttcacaagcaa 54736787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 24124785 - 24124823
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  24124785 ttgatgacagtccgtcattcgctatttgtagagtctttt 24124823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 50462456 - 50462418
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  50462456 ttgatgacagtccgtcattcactatttttagagtctttt 50462418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 2280779 - 2280742
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  2280779 tgatgacagtcagtcatgcactatttttagagtctttt 2280742  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 2778015 - 2778052
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  2778015 tgatgacagtccgtcattcgctatttctagagtctttt 2778052  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 2872853 - 2872890
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  2872853 tgatgacagtccgtcattcgctattttgagagtctttt 2872890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 6445671 - 6445634
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  6445671 tgatgacagtccgtcattcgctatttctagagtctttt 6445634  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 7485860 - 7485897
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  7485860 tgatgacagtccgtcattcgctatttctagagtctttt 7485897  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 8462558 - 8462521
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  8462558 tgatgacagtccgtcattcgctatttctagagtctttt 8462521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 9157508 - 9157545
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  9157508 tgatgacagtcagtcatgcactatttttagagtctttt 9157545  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 18645615 - 18645578
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  18645615 attgttgaaaacgtgtcacgatttgaagcacaggatga 18645578  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 24128063 - 24128100
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  24128063 tgatgacagtccgtcattcgctatttctagagtctttt 24128100  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 28264992 - 28265029
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  28264992 tgatgacagtccgtcattcgctatttctagagtctttt 28265029  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 35411699 - 35411740
Alignment:
Q  406 atttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  35411699 atttttagagtctttttatgatatttttgagttcacaagcaa 35411740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 42355336 - 42355299
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  42355336 tgatgacagtcagtcattcactatttttagagtttttt 42355299  T

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Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 45895658 - 45895695
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  45895658 tgatgacagtccgtcattcgctatttctagagtctttt 45895695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 49743825 - 49743788
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||||||||| | |||||||||||||||||    
T  49743825 tgatgacagtcagtcattagttatttttagagtctttt 49743788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 4562 - 4626
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  4562 ttgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaa 4626  T

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Target: scaffold0381 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 6554 - 6496
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc--ttttatgatatttttgagttcac 440  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcac 6496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 4880 - 4823
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcac 440  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcac 4823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 4421 - 4357
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  4421 ttgatgtcagtcagtcattcgctacttttagagtctttttatgatatttttgagttcacaagcaa 4357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 11551 - 11487
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttcacgagcaa 446  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  11551 ttgatgtcagtcagtcattcgctacttttagagtctttttatgatatttttgagttcacaagcaa 11487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 1060 - 997
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagt-cttttatgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||    
T  1060 tgatgacagtcagtcattcgctacttttagagtatttttatgatatttttgagttcacaagcaa 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 197241 - 197305
Alignment:
Q  383 ttgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    |||||||||||| |||||||   |||||||||||||||| ||||||||||||||||||| |||||    
T  197241 ttgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 197305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 554
Target Start/End: Original strand, 197356 - 197394
Alignment:
Q  516 aattgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  197356 aattgttgaaaacgtgtcacgatttgaagcacaggatga 197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 2601 - 2564
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2601 tgatgacaatcagtcattcgctatttttagagtctttt 2564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 7055 - 7018
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7055 tgatgacagtcagtcattcactatttttagagtctttt 7018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 226465 - 226502
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||||||||| |||||||||||||||||||||||||    
T  226465 tgatgacagtcaatcattcgctatttttagagtctttt 226502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 446
Target Start/End: Complemental strand, 246350 - 246287
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||| ||| |||||||   |||||||||||||||| ||||||||||||||||||| |||||    
T  246350 tgatgacggtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 246287  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 88960 - 88994
Alignment:
Q  379 gcacttgatgacagtcagtcattcgctatttttag 413  Q
    ||||||||||||||||||||||||| |||||||||    
T  88960 gcacttgatgacagtcagtcattcgttatttttag 88994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 4712 - 4675
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  4712 tgatgatagtccgtcattcgctatttttagagtctttt 4675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 18599 - 18636
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18599 tgatgacagtccgtcattcgctatttctagagtctttt 18636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Original strand, 26371 - 26408
Alignment:
Q  517 attgttgaaaacgtgtctcgatttgaagcacatgatga 554  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  26371 attgttgaaaacgtgtcacgatttgaagcacaggatga 26408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 446
Target Start/End: Original strand, 26277 - 26317
Alignment:
Q  407 tttttagagtctttt-atgatatttttgagttcacgagcaa 446  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  26277 tttttagagtctttttatgatatttttgagttcacaagcaa 26317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 30298 - 30335
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtctttt 421  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  30298 tgatgacagtccgtcattcgctattttgagagtctttt 30335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 1045 - 1101
Alignment:
Q  384 tgatgacagtcagtcattcgctatttttagagtc-ttttatgatatttttgagttca 439  Q
    ||||||||||||||||||    |||||||||||| |||||||||||||| |||||||    
T  1045 tgatgacagtcagtcatttcacatttttagagtctttttatgatattttggagttca 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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