View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8690_3 (Length: 352)
Name: NF8690_3
Description: NF8690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8690_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 177 - 352
Target Start/End: Complemental strand, 35093175 - 35093002
Alignment:
| Q |
177 |
gtgttcatatctatgca--tatctctattacgttgctgggttagtttcaatgttttatttaattcccagtgtaattaaagaggtgaggttagtatattgg |
274 |
Q |
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| T |
35093175 |
gtgttcatatctatgcaaatatctctattacgttgctgggttagtttcaatgtttta----attcccagtgtaattaaagaggtgaggttagtatattgg |
35093080 |
T |
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| Q |
275 |
agagttgaggagaacaagaggttaatgtaaataatgaatttgagatattgaagtgcacttgattgaggttgaatcgat |
352 |
Q |
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| T |
35093079 |
agagttgaggagaacaagagcttaatgtaaataatgaatttgagatattgaagtgcacttgattgaggttgaatcgat |
35093002 |
T |
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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 35093348 - 35093243
Alignment:
| Q |
10 |
agatgaagtgagtcttcaaaaattaagaaagatttgtattcatgggaaggaagaaatg----------aaatcaaatatgatcatgaatgaggggttggc |
99 |
Q |
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| T |
35093348 |
agatgaagtgagtcttcaaaaattaagaaagaattgtattcatgggaaggaagaaatgaaatgaaatgaaatgaaatatgatcatgaatgaggggttggc |
35093249 |
T |
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| Q |
100 |
aacaaa |
105 |
Q |
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| T |
35093248 |
aacaaa |
35093243 |
T |
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