View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8690_4 (Length: 332)
Name: NF8690_4
Description: NF8690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8690_4 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 21087913 - 21087600
Alignment:
| Q |
19 |
gaagacgacgatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21087913 |
gaagacgacgatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtcc |
21087814 |
T |
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| Q |
119 |
aataacctttttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcata |
218 |
Q |
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| T |
21087813 |
aataccctttttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcata |
21087714 |
T |
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| Q |
219 |
atcagtgagagaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttcct |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
21087713 |
atcagtgagagaataaatgccatttgaatctgttaaatgggattcaggtaaagccttgaactgttgtaaagaagcattcatcaagacatttggatttcct |
21087614 |
T |
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| Q |
319 |
tgaagtaaatatat |
332 |
Q |
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|||||||| ||||| |
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| T |
21087613 |
tgaagtaagtatat |
21087600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 28 - 332
Target Start/End: Complemental strand, 16367 - 16063
Alignment:
| Q |
28 |
gatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataacctt |
127 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||| || ||| |||| ||||||||| |||||||| |||||| |
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| T |
16367 |
gatgaaccacaaatttcaatgggaagaggaagagttttagcatcaagttttctccaagagttagacttatgactgtataactcagctgtccaaaaacctt |
16268 |
T |
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| Q |
128 |
tttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgag |
227 |
Q |
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||||||| |||||||||||||||||||||| |||||| |||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
16267 |
tttgtctatcatctgtttcctttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaag |
16168 |
T |
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| Q |
228 |
agaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaagtaaa |
327 |
Q |
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||||||||| ||||||||||| || ||||||||||||||||||| |||||| ||| | ||||| ||||||||||||||||||||||||||||| || |
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| T |
16167 |
agaataaataccatttgaatctgtcaaatgggattcaggtaaagacttgaactgtcttagagaagggttcatcaagacatttggatttccttgaaggaag |
16068 |
T |
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| Q |
328 |
tatat |
332 |
Q |
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||||| |
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| T |
16067 |
tatat |
16063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 55873 - 55575
Alignment:
| Q |
25 |
gacgatgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataac |
124 |
Q |
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||||||||||| |||||||||| ||||||||||| | | || ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| | |
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| T |
55873 |
gacgatgaacctgaaatttcaataggaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcc |
55774 |
T |
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| Q |
125 |
ctttttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagt |
224 |
Q |
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||||||||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||||||||||||| || || | ||||| | |||| ||||||| |
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| T |
55773 |
ctttttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcgagcccaaatccagcaaaatcagt |
55674 |
T |
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| Q |
225 |
gagagaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaagacatttggatttccttgaag |
323 |
Q |
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|||||||||| || |||| |||| || ||||| |||||||| ||||||||||| ||| |||||||| ||||||| || |||||||||||||||||| |
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| T |
55673 |
gagagaataattgagatttaaatctgtcaaatgagattcaggcaaagccttgaactgtctcaaagaagggttcatcatgagatttggatttccttgaag |
55575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 26813407 - 26813346
Alignment:
| Q |
151 |
aaccaaagatctttaagcacaataactttatagtcattagtttt-aggatcaaaaccaaaac |
211 |
Q |
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||||||| |||| ||||||||| || |||||||||||||||||| || ||||||||||||| |
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| T |
26813407 |
aaccaaatatctctaagcacaacaagtttatagtcattagttttgggggtcaaaaccaaaac |
26813346 |
T |
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