View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8690_5 (Length: 316)

Name: NF8690_5
Description: NF8690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8690_5
NF8690_5
[»] chr8 (5 HSPs)
chr8 (1-142)||(32847884-32848025)
chr8 (199-305)||(32848023-32848129)
chr8 (106-285)||(11364555-11364737)
chr8 (135-179)||(9617871-9617915)
chr8 (17-65)||(17479728-17479776)
[»] chr5 (1 HSPs)
chr5 (102-289)||(34272322-34272511)
[»] chr7 (7 HSPs)
chr7 (119-287)||(29367291-29367463)
chr7 (236-289)||(32471248-32471301)
chr7 (102-283)||(42863670-42863854)
chr7 (135-190)||(29346783-29346838)
chr7 (218-302)||(35199381-35199465)
chr7 (102-180)||(3756740-3756816)
chr7 (137-180)||(39773360-39773403)
[»] chr3 (4 HSPs)
chr3 (192-301)||(531157-531268)
chr3 (192-301)||(564112-564223)
chr3 (106-162)||(564224-564280)
chr3 (106-162)||(531269-531325)
[»] chr1 (3 HSPs)
chr1 (119-249)||(29274555-29274690)
chr1 (217-287)||(49138139-49138208)
chr1 (137-180)||(12900877-12900920)
[»] chr4 (3 HSPs)
chr4 (136-282)||(4848782-4848930)
chr4 (209-289)||(45610619-45610699)
chr4 (138-180)||(49272661-49272703)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 32847884 - 32848025
Alignment:
Q  1 tataatatcttgcctattacttagaacaggctcaggctcaaaagggagacacgtttttcttgaaaaagattcataagcggaagaacctaaattgatagat 100  Q
    |||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  32847884 tataatgtgttgcctattacctagaacaggctcaggttcaaaagggagacacgtttttcttgaaaaagattcataagcgggagaaccgaaattgatagat 32847983  T
Q  101 gagagttggtgttcttaatacataaaagagataggaaaagat 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32847984 gagagttggtgttcttaatacataaaagagataggaaaagat 32848025  T

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Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 199 - 305
Target Start/End: Original strand, 32848023 - 32848129
Alignment:
Q  199 gatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccaca 298  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32848023 gatgagagagttcatcaattttcttgatacccattattgatcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccaca 32848122  T
Q  299 tgttcat 305  Q
    |||||||    
T  32848123 tgttcat 32848129  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 106 - 285
Target Start/End: Original strand, 11364555 - 11364737
Alignment:
Q  106 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt---gagggagggatg 202  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||||||    | || | || |    
T  11364555 ttggtgttcttagtacataaaagggaaaggaaaagatagaagaagaccaagtcgaaagacttaagccattactctacttgagagtaccaaaggggagagg 11364654  T
Q  203 agagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttagg 285  Q
    ||| | |   ||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  11364655 agatactatgtcatttttcttcataccccttagtgatcatcatttctctatttatgcacaatccaagcttccttaattttagg 11364737  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 9617871 - 9617915
Alignment:
Q  135 gaaaagatagaagaagactaagtccaaagacttaagccattactc 179  Q
    ||||||||||||||||||||| | |||| ||||||| ||||||||    
T  9617871 gaaaagatagaagaagactaaatacaaaaacttaagtcattactc 9617915  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 17479776 - 17479728
Alignment:
Q  17 ttacttagaacaggctcaggctcaaaagggagacacgtttttcttgaaa 65  Q
    ||||||| |||||| ||||| ||||||||||||||  ||||||||||||    
T  17479776 ttacttacaacaggttcaggttcaaaagggagacaattttttcttgaaa 17479728  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 289
Target Start/End: Complemental strand, 34272511 - 34272322
Alignment:
Q  102 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtgagggagggat 201  Q
    ||||||||||||||||| | |||||| ||| ||| ||| ||| |||||||||||||| ||||||||||| ||||||||||| |||||||     | |||     
T  34272511 agagttggtgttcttaaaagataaaa-agaaagggaaatataaaagaagactaagtc-aaagacttaagtcattactcttctagagagtactaaatgga- 34272415  T
Q  202 gagagag-----ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 289  Q
    |||||||     ||||||| ||||||||||||||||||||  | |||| || ||||||||||||||||| || | ||||||||||||||||||    
T  34272414 gagagagaaaaattcatcaattttcttcatacccattattatttatcatttttctatttatgcacaatctaagcatccttgattttaggatca 34272322  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 29367291 - 29367463
Alignment:
Q  119 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt----gagggagggatgagagagttcatc 214  Q
    ||||||||||||| ||  || |||||||||||||||||||| |||||||||| ||||||||| | |||||||     || ||| ||||| ||| ||||||    
T  29367291 tacataaaagagaaagagaaggatagaagaagactaagtcctaagacttaagtcattactctactagagagtattaaagagagagatgatagacttcatc 29367390  T
Q  215 agttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 287  Q
    | ||||||||||||||| | |||||||||| ||| ||||||||| | || | ||| ||| || ||||||||||    
T  29367391 acttttcttcatacccactgttgatcatcatttcactatttatgtataacccaaagttctttaattttaggat 29367463  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 32471248 - 32471301
Alignment:
Q  236 tgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 289  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  32471248 tgatcatcatttctctatttatgcacaatccaagcttccttgattttaggatca 32471301  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 283
Target Start/End: Complemental strand, 42863854 - 42863670
Alignment:
Q  102 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagtg----agggag 197  Q
    ||||||||| |||||| |||| | |||| | || |||||||||||||||||  ||||| |||||||||| ||||||||| | |  |||||    | ||||    
T  42863854 agagttggtattcttagtaca-ataagaaaaagaaaaagatagaagaagacctagtcctaagacttaagtcattactctaccaatgagtgtcaaaaggag 42863756  T
Q  198 ggatgagagagttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgatttta 283  Q
     || |||||| ||  ||| |||||||||||||  ||| ||| ||||| | |||||||||||||||||| || ||||||| ||||||    
T  42863755 agaagagagacttggtcatttttcttcatacctcttagtgaccatcattcctctatttatgcacaatctaagcttccttaatttta 42863670  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 29346783 - 29346838
Alignment:
Q  135 gaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt 190  Q
    ||||||||||||||||||| |||||||||||||||| |||||| ||  ||||||||    
T  29346783 gaaaagatagaagaagacttagtccaaagacttaagtcattaccctcaaagagagt 29346838  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 35199381 - 35199465
Alignment:
Q  218 tttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatcatgagccacatgtt 302  Q
    |||||||||| | |||||||||||| | |||| ||||||||||||| | ||| ||||||  ||||| |||||  |||||||||||    
T  35199381 tttcttcatatcaattattgatcataatttctttatttatgcacaacccaaatttccttagttttaagatcactagccacatgtt 35199465  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 3756740 - 3756816
Alignment:
Q  102 agagttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactct 180  Q
    |||||||||||||||| ||||||||| | || |  ||||||||||||||||  ||||| | |||||||| |||||||||    
T  3756740 agagttggtgttcttagtacataaaaaaaatcg--aaagatagaagaagacctagtcctaggacttaagtcattactct 3756816  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 39773403 - 39773360
Alignment:
Q  137 aaagatagaagaagactaagtccaaagacttaagccattactct 180  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||    
T  39773403 aaagatagaagaagacttagtctaaagacctaagccattactct 39773360  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 531268 - 531157
Alignment:
Q  192 agggagggatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 289  Q
    |||||| || |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  531268 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 531169  T
Q  290 tgagccacatgt 301  Q
    | |||| |||||    
T  531168 ttagccgcatgt 531157  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 564223 - 564112
Alignment:
Q  192 agggagggatgagagagttcatcagttttcttcatacccattattgatcatcaatt--ctctatttatgcacaatcaaaacttccttgattttaggatca 289  Q
    |||||| || |||||| ||||||| ||||||||||||||||||| |||||||| ||  |||| | |||||||| || || |||||||||||||||||||     
T  564223 agggagagaggagagacttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcg 564124  T
Q  290 tgagccacatgt 301  Q
    | |||| |||||    
T  564123 ttagccgcatgt 564112  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 564280 - 564224
Alignment:
Q  106 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 162  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||    
T  564280 ttggtgttcttagtgcataaaagagaaaggaaaagatagaagaagaccaagtccaaa 564224  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 531325 - 531269
Alignment:
Q  106 ttggtgttcttaatacataaaagagataggaaaagatagaagaagactaagtccaaa 162  Q
    ||||||| |||| || |||||||||| |||||||||||||||||||| |||||||||    
T  531325 ttggtgtccttagtagataaaagagaaaggaaaagatagaagaagaccaagtccaaa 531269  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 29274690 - 29274555
Alignment:
Q  119 tacataaaagagataggaaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt---gagggagg--gatgagagagttcat 213  Q
    ||||||||||| | || ||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||    | |||||  || |||||| |||||    
T  29274690 tacataaaagataaagaaaaagatagaagaaggctaagtccaaggacttaaaccattactctactagagagtatcaaaggagggagaggagagacttcat 29274591  T
Q  214 cagttttcttcatacccattattgatcatcaattct 249  Q
    || | || |||||||| |||||||||||||| ||||    
T  29274590 cattatttttcataccaattattgatcatcatttct 29274555  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 49138208 - 49138139
Alignment:
Q  217 ttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggat 287  Q
    ||||||||||||||||||||||| |||| ||  ||||||||| |||||| || ||||||| ||||||||||    
T  49138208 ttttcttcatacccattattgat-atcattttcctatttatgtacaatccaagcttcctttattttaggat 49138139  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 12900920 - 12900877
Alignment:
Q  137 aaagatagaagaagactaagtccaaagacttaagccattactct 180  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  12900920 aaagatagaagaagacttagttcaaagacctaagccattactct 12900877  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 4848930 - 4848782
Alignment:
Q  136 aaaagatagaagaagactaagtccaaagacttaagccattactcttcaagagagt--gagggagggatgagagagttcatcagttttcttcatacccatt 233  Q
    |||| ||||| |||||||||||| ||||||||||| ||||||| | |||||||||   |  ||| ||  ||||| |||| || |||||||  | || |||    
T  4848930 aaaatatagaggaagactaagtctaaagacttaagtcattactgtacaagagagtactaaagagagaaaagagatttcaacaattttctttgttcctatt 4848831  T
Q  234 attgatcatcaattctctatttatgcacaatcaaaacttccttgatttt 282  Q
    |||||||| || |||| || ||||||| |||| || |||||||||||||    
T  4848830 attgatcaccatttctatacttatgcataatccaagcttccttgatttt 4848782  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 45610699 - 45610619
Alignment:
Q  209 ttcatcagttttcttcatacccattattgatcatcaattctctatttatgcacaatcaaaacttccttgattttaggatca 289  Q
    ||||||| | ||||||||| ||||||||||| |||  | | |||||||||||||| |||| |||||||||| |||| ||||    
T  45610699 ttcatcaatattcttcataaccattattgataatctttcccctatttatgcacaaccaaaccttccttgatcttagaatca 45610619  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 49272703 - 49272661
Alignment:
Q  138 aagatagaagaagactaagtccaaagacttaagccattactct 180  Q
    |||||||||||||||| |||||||| ||||||| |||||||||    
T  49272703 aagatagaagaagacttagtccaaaaacttaagtcattactct 49272661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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